ISPesp2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001796 | ND | Pseudoalteromonas sp. | Pseudoalteromonas sp. SM9913 |
DNA section
IS Length : 1675 bp
Ends
IR Length : 21/24
IRL : GGCTCTATTAGCGTTAGTTGTTGATCTCTGAATTTGTACTATAATTAATT
IRR : GGCTCTATTAGCGTTAAGTATTGAATAATTCCTTTTGTGGGGGAAAACGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAGTAAAAT | ATTTT | ATTTAACCTA | 5 |
DNA sequence
GGCTCTATTAGCGTTAGTTGTTGATCTCTGAATTTGTACTATAATTAATTGTCCCAAAGCGAGAGAGGTCGGGACATTGAAGAAAAATCAATTCACACTA
ATAATTGAATCGTTATCTAAGCTAACACATAACCAAAAACGATTGCTACACCATCACGTTGTAGAAGACCTCAAACGTGGTGATACTGATAACTTGATCA
ATGAATGTAAAGGCGATGATGTTATCTGCCCTCACTGTGGTAATGAGGAAATTGGCAAATGGGGCATGGCTGCTGGCTTACAACGCTTCAAATGTAAAAA
CTCTTCATGTGGAAAAACTTTTAATGCTCTAACTAAAACACCTCTAGCTCGATTGAGAAAGCGTGAACTCTGGGCAAAGAACCTAGAGTACATGTTAGAT
GGCTTGCCAATTAGACGAGTTGCGGAACTCTTAGAAGTTGCAGAGACTACAGCGTTTCGATGGCGACACAGATTCCTTAAAGCTCCAGCACAGCGCAAAC
CATCAGAAGTAGCGGGAATCATCGAAGCTGATGAAATGTTTTTCATGGAGAGCTTTAAAGGCAACCAAACAATATATGATCGTAAGCCTAGAAAACGAGG
TGGCATGGGCGATAGACGTACTGTTGATGATAAAATCCCTGTATTGATCGTAGTAGATAGAAGCGGAGGTTTAACAGACTTCGTACTTGAAGAACATTCA
AGCGATGAAATTCACAATGCAATGAGACCAATAGTAAATCACGACAGTATTCTCTGTAGCGATGGCGCACACGCCTATCGTTCTTTCGCCAAGGAAGAAA
ATATCCAGCATTATCGCACGATAGTCAGTAAAGGTGAGCGAGTGATAGGTGGTCAATTCCATATCCAGAACGTAAATGGCTATATGAGCCGTTTACGGGG
CTGGATGCGAAGGTTTAATGGTGTTGGCACAGAATATCTCCCAAATTACTTAGGTTGGATGAGAATGATGGATAGCAAGAAAGATAAGTACAAAGAGGTA
AGGCTTGCATACTTAGTTGACGAAAATCTTGCTTATGGCCTCGCTGCCTAGATTTATATTTATTTGATTATGAAGGCGATTTTGTTACATTAATATGTAC
TTACATATTGATAATAAAAATACTAAGGAAGGAAAAAATGAAAAAGAGAATCGCAATATTAAGTTCAATATTAGGGTTGCAGTTTTCTGCTGTAGCTCAA
GCTAATAACTATGCTGACGTTAAGCTTACTCACCTAGATCCAGAAAAGTCTGCTGCTACATGGGTTAGAACTAAACAAGTCACTCCTAGATACCCTATGG
ATCTAGCTATGAAAGGTATAGCTGGTTGTGGAGTCTTTAAGCTGACCGTAGATGAAGACGGTAAATCACAAGATATAGAATTAGTTTCGTCTATTCCTAA
GAAAGTTATTTTCAAACCTGCTAAAAAGGTCATAAAAACGTGGCGCTGGGAAAATGTTTCAGGCCAGCCAAACCAAGCTGAAGAAAAGGTAATACGCTTA
GATTTTTGTATGGGCGGAAGTTCTGAAGAAGAAGCAAAAGCTAGGTGTGCTGAACAAGCAAAACTTCAATGTGAATAATATTTAAAATACTTTCCAAAAT
AGCGTGGGAATAATCAGTAATTTCCACGTTTTCCCCCACAAAAGGAATTATTCAATACTTAACGCTAATAGAGCC
ATAATTGAATCGTTATCTAAGCTAACACATAACCAAAAACGATTGCTACACCATCACGTTGTAGAAGACCTCAAACGTGGTGATACTGATAACTTGATCA
ATGAATGTAAAGGCGATGATGTTATCTGCCCTCACTGTGGTAATGAGGAAATTGGCAAATGGGGCATGGCTGCTGGCTTACAACGCTTCAAATGTAAAAA
CTCTTCATGTGGAAAAACTTTTAATGCTCTAACTAAAACACCTCTAGCTCGATTGAGAAAGCGTGAACTCTGGGCAAAGAACCTAGAGTACATGTTAGAT
GGCTTGCCAATTAGACGAGTTGCGGAACTCTTAGAAGTTGCAGAGACTACAGCGTTTCGATGGCGACACAGATTCCTTAAAGCTCCAGCACAGCGCAAAC
CATCAGAAGTAGCGGGAATCATCGAAGCTGATGAAATGTTTTTCATGGAGAGCTTTAAAGGCAACCAAACAATATATGATCGTAAGCCTAGAAAACGAGG
TGGCATGGGCGATAGACGTACTGTTGATGATAAAATCCCTGTATTGATCGTAGTAGATAGAAGCGGAGGTTTAACAGACTTCGTACTTGAAGAACATTCA
AGCGATGAAATTCACAATGCAATGAGACCAATAGTAAATCACGACAGTATTCTCTGTAGCGATGGCGCACACGCCTATCGTTCTTTCGCCAAGGAAGAAA
ATATCCAGCATTATCGCACGATAGTCAGTAAAGGTGAGCGAGTGATAGGTGGTCAATTCCATATCCAGAACGTAAATGGCTATATGAGCCGTTTACGGGG
CTGGATGCGAAGGTTTAATGGTGTTGGCACAGAATATCTCCCAAATTACTTAGGTTGGATGAGAATGATGGATAGCAAGAAAGATAAGTACAAAGAGGTA
AGGCTTGCATACTTAGTTGACGAAAATCTTGCTTATGGCCTCGCTGCCTAGATTTATATTTATTTGATTATGAAGGCGATTTTGTTACATTAATATGTAC
TTACATATTGATAATAAAAATACTAAGGAAGGAAAAAATGAAAAAGAGAATCGCAATATTAAGTTCAATATTAGGGTTGCAGTTTTCTGCTGTAGCTCAA
GCTAATAACTATGCTGACGTTAAGCTTACTCACCTAGATCCAGAAAAGTCTGCTGCTACATGGGTTAGAACTAAACAAGTCACTCCTAGATACCCTATGG
ATCTAGCTATGAAAGGTATAGCTGGTTGTGGAGTCTTTAAGCTGACCGTAGATGAAGACGGTAAATCACAAGATATAGAATTAGTTTCGTCTATTCCTAA
GAAAGTTATTTTCAAACCTGCTAAAAAGGTCATAAAAACGTGGCGCTGGGAAAATGTTTCAGGCCAGCCAAACCAAGCTGAAGAAAAGGTAATACGCTTA
GATTTTTGTATGGGCGGAAGTTCTGAAGAAGAAGCAAAAGCTAGGTGTGCTGAACAAGCAAAACTTCAATGTGAATAATATTTAAAATACTTTCCAAAAT
AGCGTGGGAATAATCAGTAATTTCCACGTTTTCCCCCACAAAAGGAATTATTCAATACTTAACGCTAATAGAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
975 bp | 324 aa | 77 | 1051 | + | No |
Chemistry : DDE
ORF sequence :
MKKNQFTLIIESLSKLTHNQKRLLHHHVVEDLKRGDTDNLINECKGDDVICPHCGNEEIGKWGMAAGLQRFKCKNSSCGKTFNALTKTPLARLRKRELWA
KNLEYMLDGLPIRRVAELLEVAETTAFRWRHRFLKAPAQRKPSEVAGIIEADEMFFMESFKGNQTIYDRKPRKRGGMGDRRTVDDKIPVLIVVDRSGGLT
DFVLEEHSSDEIHNAMRPIVNHDSILCSDGAHAYRSFAKEENIQHYRTIVSKGERVIGGQFHIQNVNGYMSRLRGWMRRFNGVGTEYLPNYLGWMRMMDS
KKDKYKEVRLAYLVDENLAYGLAA
KNLEYMLDGLPIRRVAELLEVAETTAFRWRHRFLKAPAQRKPSEVAGIIEADEMFFMESFKGNQTIYDRKPRKRGGMGDRRTVDDKIPVLIVVDRSGGLT
DFVLEEHSSDEIHNAMRPIVNHDSILCSDGAHAYRSFAKEENIQHYRTIVSKGERVIGGQFHIQNVNGYMSRLRGWMRRFNGVGTEYLPNYLGWMRMMDS
KKDKYKEVRLAYLVDENLAYGLAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
441 bp | 146 aa | 1138 | 1578 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKKRIAILSSILGLQFSAVAQANNYADVKLTHLDPEKSAATWVRTKQVTPRYPMDLAMKGIAGCGVFKLTVDEDGKSQDIELVSSIPKKVIFKPAKKVIK
TWRWENVSGQPNQAEEKVIRLDFCMGGSSEEEAKARCAEQAKLQCE
TWRWENVSGQPNQAEEKVIRLDFCMGGSSEEEAKARCAEQAKLQCE
Blast result :
Comments
ISPesp2 is 58% aa (transposase) similar to ISNe7.
References
1] ISfinder annotation (2016)
2] Qin,Q.L., Li,Y., Zhang,Y.J., Zhou,Z.M., Zhang,W.X., Chen,X.L., Zhang,X.Y., Zhou,B.C., Wang,L. and Zhang,Y.Z. (2011) ISME J. Feb;5(2):274-84.
2] Qin,Q.L., Li,Y., Zhang,Y.J., Zhou,Z.M., Zhang,W.X., Chen,X.L., Zhang,X.Y., Zhou,B.C., Wang,L. and Zhang,Y.Z. (2011) ISME J. Feb;5(2):274-84.