ISPbo1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOWX01000066 ND Pseudomonas borbori
Pseudomonas borbori DSM 17834
DNA section
IS Length : 1036 bp

Ends


IR Length : 25/26

IRL : GGCTCTGTTCGCGTTCATCGTGGGTTGGCTAGACTGAAATCAATACAGCC
IRR : GGCTCTGTTCGCGTTCGTCGTGGGTTACCCCACCGCATGCCGAATCCACG

Insertion site


Left flankDirect repeatRight flankDR Length
AATGCCGGGGCGATTAACTTTTTCCTTTTTTGGT0

DNA sequence

GGCTCTGTTCGCGTTCATCGTGGGTTGGCTAGACTGAAATCAATACAGCCAGCGGGAGGGGTGCATGATGGAGAGCAAGGCATTCCAGTCATGGTTTTCT
CAAGTCGCCAGTCTGACCGTAAAGCAGCGCGCTCAGGTTCGGCAGGCGCTGAATCAGCCGCCCCGCACATCCCTGGCTGTCGAAGTTGTGAATCAGCGCG
CCTCCGAGGTGTTGGCCTGCCCGCATTGCCACTCCGGGCATATCCACGGGTGGGGCAAGGAAGCTGGTCTGCAGCGCTATCGCTGCACGAGTTGCCATAA
GACATTCAATGCGGCGACCGGAACGCCGTTGGCCCGACTCAAGCGTAGCGATGCTTGGCTGGTTTACGCTCAAGCGATGGTCAATGGCCTCAGTGTGCGC
AAGGCCGCTCAGGAGGCTGGCGTGCATCGCACCACGGCCTTTCGCTGGCGCCACCGGATGCTGGCGCTTCCCGCTAGCGAAAACGACACCGAGCTGTCGA
ATATCGTCGAAGCTGACGAGACCTACTTCCTGGAGTCATTCAAGGGCAAGCGCAAGCTGCCACGCCCGGCTCGACATCGTGGCGGGAAAGCCCGAAAGCG
TGGCCTGTCGGCCGAGCAAAGACCGGTACTTGTCGCCCAGGATCGGCAAGGCAAGCATTACGATGCTGTCCTGCCCAAGGTGGATAAGCAGACGCTCGGG
AGCCTGCTCTCGCAACTGTTGACCCCCGAGTCGGTGTTATGCACCGATGGTGCAGGCGTCTATCGCGCCGTCACCAAGGCCGAAGCCATCCCGCATGAAT
CGTTGAACCTGGCGCAGGGCACGAGGGTCAAGCAACGCGTCTTTCATCTCCAACATGTGAATGCCTACGACTCGCGCTTGAAGCAGTGGATGCGCCGCTT
CAACGGCGTCGCCACCCGATATTTGCCAAATTACCTGGGTTGGCGGCGATTGCTGGAGCGTGCAGGCAAAGACATCGGCCCAGAGGCGTGGATTCGGCAT
GCGGTGGGGTAACCCACGACGAACGCGAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa651012+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMESKAFQSWFSQVASLTVKQRAQVRQALNQPPRTSLAVEVVNQRASEVLACPHCHSGHIHGWGKEAGLQRYRCTSCHKTFNAATGTPLARLKRSDAWLV
YAQAMVNGLSVRKAAQEAGVHRTTAFRWRHRMLALPASENDTELSNIVEADETYFLESFKGKRKLPRPARHRGGKARKRGLSAEQRPVLVAQDRQGKHYD
AVLPKVDKQTLGSLLSQLLTPESVLCTDGAGVYRAVTKAEAIPHESLNLAQGTRVKQRVFHLQHVNAYDSRLKQWMRRFNGVATRYLPNYLGWRRLLERA
GKDIGPEAWIRHAVG

 

Blast result :
Comments
ISPbo1 is 64% aa similar to ISAzvi1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.