ISPbo1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FOWX01000066 | ND | Pseudomonas borbori | Pseudomonas borbori DSM 17834 |
DNA section
IS Length : 1036 bp
Ends
IR Length : 25/26
IRL : GGCTCTGTTCGCGTTCATCGTGGGTTGGCTAGACTGAAATCAATACAGCC
IRR : GGCTCTGTTCGCGTTCGTCGTGGGTTACCCCACCGCATGCCGAATCCACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATGCCGGGGCGATTAACTTT | TTCCTTTTTTGGT | 0 |
DNA sequence
GGCTCTGTTCGCGTTCATCGTGGGTTGGCTAGACTGAAATCAATACAGCCAGCGGGAGGGGTGCATGATGGAGAGCAAGGCATTCCAGTCATGGTTTTCT
CAAGTCGCCAGTCTGACCGTAAAGCAGCGCGCTCAGGTTCGGCAGGCGCTGAATCAGCCGCCCCGCACATCCCTGGCTGTCGAAGTTGTGAATCAGCGCG
CCTCCGAGGTGTTGGCCTGCCCGCATTGCCACTCCGGGCATATCCACGGGTGGGGCAAGGAAGCTGGTCTGCAGCGCTATCGCTGCACGAGTTGCCATAA
GACATTCAATGCGGCGACCGGAACGCCGTTGGCCCGACTCAAGCGTAGCGATGCTTGGCTGGTTTACGCTCAAGCGATGGTCAATGGCCTCAGTGTGCGC
AAGGCCGCTCAGGAGGCTGGCGTGCATCGCACCACGGCCTTTCGCTGGCGCCACCGGATGCTGGCGCTTCCCGCTAGCGAAAACGACACCGAGCTGTCGA
ATATCGTCGAAGCTGACGAGACCTACTTCCTGGAGTCATTCAAGGGCAAGCGCAAGCTGCCACGCCCGGCTCGACATCGTGGCGGGAAAGCCCGAAAGCG
TGGCCTGTCGGCCGAGCAAAGACCGGTACTTGTCGCCCAGGATCGGCAAGGCAAGCATTACGATGCTGTCCTGCCCAAGGTGGATAAGCAGACGCTCGGG
AGCCTGCTCTCGCAACTGTTGACCCCCGAGTCGGTGTTATGCACCGATGGTGCAGGCGTCTATCGCGCCGTCACCAAGGCCGAAGCCATCCCGCATGAAT
CGTTGAACCTGGCGCAGGGCACGAGGGTCAAGCAACGCGTCTTTCATCTCCAACATGTGAATGCCTACGACTCGCGCTTGAAGCAGTGGATGCGCCGCTT
CAACGGCGTCGCCACCCGATATTTGCCAAATTACCTGGGTTGGCGGCGATTGCTGGAGCGTGCAGGCAAAGACATCGGCCCAGAGGCGTGGATTCGGCAT
GCGGTGGGGTAACCCACGACGAACGCGAACAGAGCC
CAAGTCGCCAGTCTGACCGTAAAGCAGCGCGCTCAGGTTCGGCAGGCGCTGAATCAGCCGCCCCGCACATCCCTGGCTGTCGAAGTTGTGAATCAGCGCG
CCTCCGAGGTGTTGGCCTGCCCGCATTGCCACTCCGGGCATATCCACGGGTGGGGCAAGGAAGCTGGTCTGCAGCGCTATCGCTGCACGAGTTGCCATAA
GACATTCAATGCGGCGACCGGAACGCCGTTGGCCCGACTCAAGCGTAGCGATGCTTGGCTGGTTTACGCTCAAGCGATGGTCAATGGCCTCAGTGTGCGC
AAGGCCGCTCAGGAGGCTGGCGTGCATCGCACCACGGCCTTTCGCTGGCGCCACCGGATGCTGGCGCTTCCCGCTAGCGAAAACGACACCGAGCTGTCGA
ATATCGTCGAAGCTGACGAGACCTACTTCCTGGAGTCATTCAAGGGCAAGCGCAAGCTGCCACGCCCGGCTCGACATCGTGGCGGGAAAGCCCGAAAGCG
TGGCCTGTCGGCCGAGCAAAGACCGGTACTTGTCGCCCAGGATCGGCAAGGCAAGCATTACGATGCTGTCCTGCCCAAGGTGGATAAGCAGACGCTCGGG
AGCCTGCTCTCGCAACTGTTGACCCCCGAGTCGGTGTTATGCACCGATGGTGCAGGCGTCTATCGCGCCGTCACCAAGGCCGAAGCCATCCCGCATGAAT
CGTTGAACCTGGCGCAGGGCACGAGGGTCAAGCAACGCGTCTTTCATCTCCAACATGTGAATGCCTACGACTCGCGCTTGAAGCAGTGGATGCGCCGCTT
CAACGGCGTCGCCACCCGATATTTGCCAAATTACCTGGGTTGGCGGCGATTGCTGGAGCGTGCAGGCAAAGACATCGGCCCAGAGGCGTGGATTCGGCAT
GCGGTGGGGTAACCCACGACGAACGCGAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 65 | 1012 | + | No |
Chemistry : DDE
ORF sequence :
MMESKAFQSWFSQVASLTVKQRAQVRQALNQPPRTSLAVEVVNQRASEVLACPHCHSGHIHGWGKEAGLQRYRCTSCHKTFNAATGTPLARLKRSDAWLV
YAQAMVNGLSVRKAAQEAGVHRTTAFRWRHRMLALPASENDTELSNIVEADETYFLESFKGKRKLPRPARHRGGKARKRGLSAEQRPVLVAQDRQGKHYD
AVLPKVDKQTLGSLLSQLLTPESVLCTDGAGVYRAVTKAEAIPHESLNLAQGTRVKQRVFHLQHVNAYDSRLKQWMRRFNGVATRYLPNYLGWRRLLERA
GKDIGPEAWIRHAVG
YAQAMVNGLSVRKAAQEAGVHRTTAFRWRHRMLALPASENDTELSNIVEADETYFLESFKGKRKLPRPARHRGGKARKRGLSAEQRPVLVAQDRQGKHYD
AVLPKVDKQTLGSLLSQLLTPESVLCTDGAGVYRAVTKAEAIPHESLNLAQGTRVKQRVFHLQHVNAYDSRLKQWMRRFNGVATRYLPNYLGWRRLLERA
GKDIGPEAWIRHAVG
Blast result :
Comments
ISPbo1 is 64% aa similar to ISAzvi1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.