ISRso22

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CAGT01000047 ND Ralstonia solanacearum
Ralstonia solanacearum K60
DNA section
IS Length : 1052 bp

Ends


IR Length : 23

IRL : GGCTATGTCTGAATAAACTGTTGCGACTTCACTGTGTCAAACGGATGTTG
IRR : GGCTATGTCTGAATAAACTGTTGAGGTCGCGCTCTGCCCAAGCTGAGCGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGTGCCGGCGTTTTTCATTTGCCGCGAAAGCG8

DNA sequence

GGCTATGTCTGAATAAACTGTTGCGACTTCACTGTGTCAAACGGATGTTGGATGACGGATGGCAGGCAAATGAAGGCGGCAGAGTTTCAACGGTGGTTGG
CAAAGCTGGCGACGCTCACGGCACATCAGCGCGAGTCGGTTGAGCAACAACTGCGCTGCGGCGACCCGCGTCGGGCCACGGAACGCCTGATTGCGCAATT
GAGCGGTCCGGTCGAACGTTGCCCGCATTGCGGGCATGCCGAGGTGGGGCCGTGGGGCAGCAGTGGCGGTCTGGAGCGTTATCGCTGCAAAGGCTGCAGC
AAGACCTTCAACGCCCTCACTGGGACGCCGCTGGCCCGGTTGCGTCACCGTGAGCAATGGCAGACCTTCATGCTGGCCCTGATTGAGGGCCAGTCGGTTC
GCCAGGCAGCCGAGCGATGTGGGGTAGATAAGAACACCGCCTTTCTGTGGCGCCATCGCTTCCTGCGGCTTCCTGCCGAACAGAAAGCCAAGCGCGAGAG
CGGTATCGTCGAGGCCGACGAAACCTATTTCCTGGAGTCGTTCAAAGGCAGCCGCCAGTTGCCTCGTGCGCCACGCAAGCGTGGCGGCAAAGCTGCCAAA
CGGGGCTTATCGGCAGAGCAGATTCCTGTGCTGATTGCGCGTGACCGCGTAGGCGAGACGGTCGACTTCGTCCTACCCAAGGCCGACAAGAAGCATATTG
GCGCTGTCCTGAAGCCCTTGCTGGCGGAAGACGCCATCCTTTGCACCGACGGTGGCGGTTCGGGCGTGTATGCCGCCGTAGCGCGCGAGCACAAGTTGAC
CCATCGCTTCGTCAATGTACGTGCCGGCATCAAGGTCGTCGGCAAGGTCTATCACGTGCAAAACGTGAACGCCTACGCCAGTCGTCTCAAGGGGTGGATG
CGCCGATTCCACGGGGTCGCCACCAAGTACCTGCCCAACTATCTGGGCTGGCGCCGCATGCTGGAACGCTCAGGCGGCGCCATCTCCCCGCCGCTATGCA
TCGCGCTCAGCTTGGGCAGAGCGCGACCTCAACAGTTTATTCAGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa701050+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKAAEFQRWLAKLATLTAHQRESVEQQLRCGDPRRATERLIAQLSGPVERCPHCGHAEVGPWGSSGGLERYRCKGCSKTFNALTGTPLARLRHREQWQTF
MLALIEGQSVRQAAERCGVDKNTAFLWRHRFLRLPAEQKAKRESGIVEADETYFLESFKGSRQLPRAPRKRGGKAAKRGLSAEQIPVLIARDRVGETVDF
VLPKADKKHIGAVLKPLLAEDAILCTDGGGSGVYAAVAREHKLTHRFVNVRAGIKVVGKVYHVQNVNAYASRLKGWMRRFHGVATKYLPNYLGWRRMLER
SGGAISPPLCIALSLGRARPQQFIQT

 

Blast result :
Comments
ISRso22 is 69% aa similar to ISLsp2.
References
1] ISfinder annotation (2016)
2] LABGeM, C.E.A (2012) Direct GenBank submission.