ISRso22
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CAGT01000047 | ND | Ralstonia solanacearum | Ralstonia solanacearum K60 |
DNA section
IS Length : 1052 bp
Ends
IR Length : 23
IRL : GGCTATGTCTGAATAAACTGTTGCGACTTCACTGTGTCAAACGGATGTTG
IRR : GGCTATGTCTGAATAAACTGTTGAGGTCGCGCTCTGCCCAAGCTGAGCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGCCGGCGT | TTTTCATT | TGCCGCGAAAGCG | 8 |
DNA sequence
GGCTATGTCTGAATAAACTGTTGCGACTTCACTGTGTCAAACGGATGTTGGATGACGGATGGCAGGCAAATGAAGGCGGCAGAGTTTCAACGGTGGTTGG
CAAAGCTGGCGACGCTCACGGCACATCAGCGCGAGTCGGTTGAGCAACAACTGCGCTGCGGCGACCCGCGTCGGGCCACGGAACGCCTGATTGCGCAATT
GAGCGGTCCGGTCGAACGTTGCCCGCATTGCGGGCATGCCGAGGTGGGGCCGTGGGGCAGCAGTGGCGGTCTGGAGCGTTATCGCTGCAAAGGCTGCAGC
AAGACCTTCAACGCCCTCACTGGGACGCCGCTGGCCCGGTTGCGTCACCGTGAGCAATGGCAGACCTTCATGCTGGCCCTGATTGAGGGCCAGTCGGTTC
GCCAGGCAGCCGAGCGATGTGGGGTAGATAAGAACACCGCCTTTCTGTGGCGCCATCGCTTCCTGCGGCTTCCTGCCGAACAGAAAGCCAAGCGCGAGAG
CGGTATCGTCGAGGCCGACGAAACCTATTTCCTGGAGTCGTTCAAAGGCAGCCGCCAGTTGCCTCGTGCGCCACGCAAGCGTGGCGGCAAAGCTGCCAAA
CGGGGCTTATCGGCAGAGCAGATTCCTGTGCTGATTGCGCGTGACCGCGTAGGCGAGACGGTCGACTTCGTCCTACCCAAGGCCGACAAGAAGCATATTG
GCGCTGTCCTGAAGCCCTTGCTGGCGGAAGACGCCATCCTTTGCACCGACGGTGGCGGTTCGGGCGTGTATGCCGCCGTAGCGCGCGAGCACAAGTTGAC
CCATCGCTTCGTCAATGTACGTGCCGGCATCAAGGTCGTCGGCAAGGTCTATCACGTGCAAAACGTGAACGCCTACGCCAGTCGTCTCAAGGGGTGGATG
CGCCGATTCCACGGGGTCGCCACCAAGTACCTGCCCAACTATCTGGGCTGGCGCCGCATGCTGGAACGCTCAGGCGGCGCCATCTCCCCGCCGCTATGCA
TCGCGCTCAGCTTGGGCAGAGCGCGACCTCAACAGTTTATTCAGACATAGCC
CAAAGCTGGCGACGCTCACGGCACATCAGCGCGAGTCGGTTGAGCAACAACTGCGCTGCGGCGACCCGCGTCGGGCCACGGAACGCCTGATTGCGCAATT
GAGCGGTCCGGTCGAACGTTGCCCGCATTGCGGGCATGCCGAGGTGGGGCCGTGGGGCAGCAGTGGCGGTCTGGAGCGTTATCGCTGCAAAGGCTGCAGC
AAGACCTTCAACGCCCTCACTGGGACGCCGCTGGCCCGGTTGCGTCACCGTGAGCAATGGCAGACCTTCATGCTGGCCCTGATTGAGGGCCAGTCGGTTC
GCCAGGCAGCCGAGCGATGTGGGGTAGATAAGAACACCGCCTTTCTGTGGCGCCATCGCTTCCTGCGGCTTCCTGCCGAACAGAAAGCCAAGCGCGAGAG
CGGTATCGTCGAGGCCGACGAAACCTATTTCCTGGAGTCGTTCAAAGGCAGCCGCCAGTTGCCTCGTGCGCCACGCAAGCGTGGCGGCAAAGCTGCCAAA
CGGGGCTTATCGGCAGAGCAGATTCCTGTGCTGATTGCGCGTGACCGCGTAGGCGAGACGGTCGACTTCGTCCTACCCAAGGCCGACAAGAAGCATATTG
GCGCTGTCCTGAAGCCCTTGCTGGCGGAAGACGCCATCCTTTGCACCGACGGTGGCGGTTCGGGCGTGTATGCCGCCGTAGCGCGCGAGCACAAGTTGAC
CCATCGCTTCGTCAATGTACGTGCCGGCATCAAGGTCGTCGGCAAGGTCTATCACGTGCAAAACGTGAACGCCTACGCCAGTCGTCTCAAGGGGTGGATG
CGCCGATTCCACGGGGTCGCCACCAAGTACCTGCCCAACTATCTGGGCTGGCGCCGCATGCTGGAACGCTCAGGCGGCGCCATCTCCCCGCCGCTATGCA
TCGCGCTCAGCTTGGGCAGAGCGCGACCTCAACAGTTTATTCAGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 70 | 1050 | + | No |
Chemistry : DDE
ORF sequence :
MKAAEFQRWLAKLATLTAHQRESVEQQLRCGDPRRATERLIAQLSGPVERCPHCGHAEVGPWGSSGGLERYRCKGCSKTFNALTGTPLARLRHREQWQTF
MLALIEGQSVRQAAERCGVDKNTAFLWRHRFLRLPAEQKAKRESGIVEADETYFLESFKGSRQLPRAPRKRGGKAAKRGLSAEQIPVLIARDRVGETVDF
VLPKADKKHIGAVLKPLLAEDAILCTDGGGSGVYAAVAREHKLTHRFVNVRAGIKVVGKVYHVQNVNAYASRLKGWMRRFHGVATKYLPNYLGWRRMLER
SGGAISPPLCIALSLGRARPQQFIQT
MLALIEGQSVRQAAERCGVDKNTAFLWRHRFLRLPAEQKAKRESGIVEADETYFLESFKGSRQLPRAPRKRGGKAAKRGLSAEQIPVLIARDRVGETVDF
VLPKADKKHIGAVLKPLLAEDAILCTDGGGSGVYAAVAREHKLTHRFVNVRAGIKVVGKVYHVQNVNAYASRLKGWMRRFHGVATKYLPNYLGWRRMLER
SGGAISPPLCIALSLGRARPQQFIQT
Blast result :
Comments
ISRso22 is 69% aa similar to ISLsp2.
References
1] ISfinder annotation (2016)
2] LABGeM, C.E.A (2012) Direct GenBank submission.
2] LABGeM, C.E.A (2012) Direct GenBank submission.