ISHti16
- Family IS1595
- Group ISH4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AFNT02000003 | ND | Halorhabdus tiamatea | Halorhabdus tiamatea SARL4B |
DNA section
IS Length : 1003 bp
Ends
IR Length : 22/26
IRL : CGCTCTTGGGAAGTAGGTTGTTGGTGGGAGAAAGCTGACGCTGTGAAAAC
IRR : CGCTCATGTGAAGCACGTTGTTGGTGAATCAGAGCACGGTTCGGACAATT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCGACACCACT | TTGGAAAAA | TATGCGGGAT | 8 |
DNA sequence
CGCTCTTGGGAAGTAGGTTGTTGGTGGGAGAAAGCTGACGCTGTGAAAACGTAGCGGGCAAGGGTGACGCGGTAGCGTCACCCGAATGCAATGTTCCCAT
TTGAATTGCTGAACTCAGAGGCGAGCGCCGCGAACCTGCTCCAGCAGGTTCGCTGGCGCGATGGCCTCTATTGCCCGCACTGCCGCAGTGAGTCGGTCAT
CAACTACGGCAGCTATCGCTTCTTTCAACGGTATCGCTGTAAGGATTGCGGCCGCACGTTTAACGACAAGACCGGCACGATCTTCGCCCACGCGAAGATC
GGCCTCGATAAACTCATGTTCGCGTTTTACGCACTCTTACGCTTCAATTCGAGCATTCGTCAACTAGACGCTGAGATCGACGTCTCGTATCGGTCGCTCC
GGCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCGTCAATCTGGTCGGCCCGGTCGAAATCGACGAAGTCTACGTAAATTCCGGGCTGAA
AGGCCGCGAGCGCGACCAAGAGTCGCGCTCGCGTGCCTTGTCAAGACGTGGCCGTGGCACCTATCACGAGGACAAACCGCCCGTGTTCACGCTCGTCGAT
CGTGGCAGCGAACAGCGACACGTCGTCCCTGCGAAATCAGCCGACGAATCAACTGTGCGACTCCTCCTCGACAACCACGAGGAGGAGTCGCTCACAGTCT
ACACCGACGGATTTCGAGCGTATGATCCACTAGAAGATGACGAAAACTTCCAGCGAGAATCGGTTAATCACGGCGAGGGAGAATACGTCGATGGAGACGC
ACACGTCAACACCTGCGAGAGCCACGCGTCGCTGGTGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCAAAAGACAAGCTGACGCCGTATCTCAGAGCG
TTCCAACTCCGGCGACGTATCCTCCGAAAACCAGGCCGAGAAGCGCTCGCAGAAATTGTCCGAACCGTGCTCTGATTCACCAACAACGTGCTTCACATGA
GCG
TTGAATTGCTGAACTCAGAGGCGAGCGCCGCGAACCTGCTCCAGCAGGTTCGCTGGCGCGATGGCCTCTATTGCCCGCACTGCCGCAGTGAGTCGGTCAT
CAACTACGGCAGCTATCGCTTCTTTCAACGGTATCGCTGTAAGGATTGCGGCCGCACGTTTAACGACAAGACCGGCACGATCTTCGCCCACGCGAAGATC
GGCCTCGATAAACTCATGTTCGCGTTTTACGCACTCTTACGCTTCAATTCGAGCATTCGTCAACTAGACGCTGAGATCGACGTCTCGTATCGGTCGCTCC
GGCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCGTCAATCTGGTCGGCCCGGTCGAAATCGACGAAGTCTACGTAAATTCCGGGCTGAA
AGGCCGCGAGCGCGACCAAGAGTCGCGCTCGCGTGCCTTGTCAAGACGTGGCCGTGGCACCTATCACGAGGACAAACCGCCCGTGTTCACGCTCGTCGAT
CGTGGCAGCGAACAGCGACACGTCGTCCCTGCGAAATCAGCCGACGAATCAACTGTGCGACTCCTCCTCGACAACCACGAGGAGGAGTCGCTCACAGTCT
ACACCGACGGATTTCGAGCGTATGATCCACTAGAAGATGACGAAAACTTCCAGCGAGAATCGGTTAATCACGGCGAGGGAGAATACGTCGATGGAGACGC
ACACGTCAACACCTGCGAGAGCCACGCGTCGCTGGTGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCAAAAGACAAGCTGACGCCGTATCTCAGAGCG
TTCCAACTCCGGCGACGTATCCTCCGAAAACCAGGCCGAGAAGCGCTCGCAGAAATTGTCCGAACCGTGCTCTGATTCACCAACAACGTGCTTCACATGA
GCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MFPFELLNSEASAANLLQQVRWRDGLYCPHCRSESVINYGSYRFFQRYRCKDCGRTFNDKTGTIFAHAKIGLDKLMFAFYALLRFNSSIRQLDAEIDVSY
RSLRRRVEQFARTLDAPAVNLVGPVEIDEVYVNSGLKGRERDQESRSRALSRRGRGTYHEDKPPVFTLVDRGSEQRHVVPAKSADESTVRLLLDNHEEES
LTVYTDGFRAYDPLEDDENFQRESVNHGEGEYVDGDAHVNTCESHASLVRRWLSPHRGVSKDKLTPYLRAFQLRRRILRKPGREALAEIVRTVL
RSLRRRVEQFARTLDAPAVNLVGPVEIDEVYVNSGLKGRERDQESRSRALSRRGRGTYHEDKPPVFTLVDRGSEQRHVVPAKSADESTVRLLLDNHEEES
LTVYTDGFRAYDPLEDDENFQRESVNHGEGEYVDGDAHVNTCESHASLVRRWLSPHRGVSKDKLTPYLRAFQLRRRILRKPGREALAEIVRTVL
Blast result :
Comments
ISHti16 is 91% aa similar to ISNagr10.
References
1] ISfinder annotation (2016)
2] Antunes,A., Alam,I., Bajic,V.B. and Stingl,U. (2011) J. Bacteriol. 193 (17), 4553-4554.
3] Alam,I., Antunes,A., Kamau,A.A., Ba Alawi,W., Kalkatawi,M., Stingl,U. and Bajic,V.B. (2013) PLoS ONE 8 (12), E82210.
2] Antunes,A., Alam,I., Bajic,V.B. and Stingl,U. (2011) J. Bacteriol. 193 (17), 4553-4554.
3] Alam,I., Antunes,A., Kamau,A.A., Ba Alawi,W., Kalkatawi,M., Stingl,U. and Bajic,V.B. (2013) PLoS ONE 8 (12), E82210.