ISHlt1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JHUT02000001 | ND | Haloterrigena sp. | Haloterrigena sp. H13 |
DNA section
IS Length : 1002 bp
Ends
IR Length : 27/34
IRL : CGCTCTTGCGAAGTAGATTGTTGGTCAGGGAGAGCTGGCGCTGAGAAAGC
IRR : CGCTCTTGGGAAGCACGTTGTTGGTGAGTCAGAGGACGGTTCGAACGATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAGTTGGAATA | TACAATTAA | ATCTATTAGC | 8 |
DNA sequence
CGCTCTTGCGAAGTAGATTGTTGGTCAGGGAGAGCTGGCGCTGAGAAAGCGTAGCGGGCAGGGTGACGCGTCCGCGTCACCCGAATGCAATGTTCCCGTT
TGAGTTGTTGAACTCGGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAAGGCCTCCAGTGCCCGCGCTGCCGGTCTGAGTTAGTGATC
AAGCACGGCAGCTACCGAGTTTATCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGTCGAGACCGGCACGATCTTCGCGCACGCGAAGATCG
GCCTCGACAAGCTCTTGTTCGCGTACTACACGCTGCTCCGGTTCAACACCAGTATTCGCCAATTAGACGCTGAACTCGACGTTTCTTACCTGTCACTGCG
GCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCTAGCCATCGACCTCGCCGGTCCCGTCGAGATCGACGAACTCTACGTGTCTGCGGGGCTCAGA
GGCCGCGAGCGCGACCAAGAGTCGCGCTCGCGTGGCCTTTCGTCGCGTGGACGCGGAAGCTACGAGGATGACCAGCCGCCAGTGTTCACACTCGTTGATC
GCGGCAGCGATCAGCGATACGTCGTCCCAGCAAAATCCGCTGACGAATCGACCGTGCGACTCCTCCTCGGTGACCACGAGGAGGAGTCGCTAACCGTCTA
CACCGACGGATTTCGAACGTACGACCCACTCCAAGATGACGAGAATTACCAGCGAGAAGCGGTCATTCACGGTGAGGGCGAATACGTCGATGGAGACGCC
CACGTGAATACCTGCGAGAGCCACGCGTCGCTGGTGCGACGGTGGCTCTCGCCGCACCGAGACGTCTCAAAAGATAAGCTCACACCATATCTCAGAGCCT
TCCAGCTCCGCCACCGAATCTTCCGCAAACCTGGTCGAGAAGCTCTCAAAGAAATCGTTCGAACCGTCCTCTGACTCACCAACAACGTGCTTCCCAAGAG
CG
TGAGTTGTTGAACTCGGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAAGGCCTCCAGTGCCCGCGCTGCCGGTCTGAGTTAGTGATC
AAGCACGGCAGCTACCGAGTTTATCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGTCGAGACCGGCACGATCTTCGCGCACGCGAAGATCG
GCCTCGACAAGCTCTTGTTCGCGTACTACACGCTGCTCCGGTTCAACACCAGTATTCGCCAATTAGACGCTGAACTCGACGTTTCTTACCTGTCACTGCG
GCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCTAGCCATCGACCTCGCCGGTCCCGTCGAGATCGACGAACTCTACGTGTCTGCGGGGCTCAGA
GGCCGCGAGCGCGACCAAGAGTCGCGCTCGCGTGGCCTTTCGTCGCGTGGACGCGGAAGCTACGAGGATGACCAGCCGCCAGTGTTCACACTCGTTGATC
GCGGCAGCGATCAGCGATACGTCGTCCCAGCAAAATCCGCTGACGAATCGACCGTGCGACTCCTCCTCGGTGACCACGAGGAGGAGTCGCTAACCGTCTA
CACCGACGGATTTCGAACGTACGACCCACTCCAAGATGACGAGAATTACCAGCGAGAAGCGGTCATTCACGGTGAGGGCGAATACGTCGATGGAGACGCC
CACGTGAATACCTGCGAGAGCCACGCGTCGCTGGTGCGACGGTGGCTCTCGCCGCACCGAGACGTCTCAAAAGATAAGCTCACACCATATCTCAGAGCCT
TCCAGCTCCGCCACCGAATCTTCCGCAAACCTGGTCGAGAAGCTCTCAAAGAAATCGTTCGAACCGTCCTCTGACTCACCAACAACGTGCTTCCCAAGAG
CG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 90 | 974 | + | No |
Chemistry : DDE
ORF sequence :
MFPFELLNSEASAANLLEQVRWREGLQCPRCRSELVIKHGSYRVYQRYLCKDCDRTFNVETGTIFAHAKIGLDKLLFAYYTLLRFNTSIRQLDAELDVSY
LSLRRRVEQFARTLDALAIDLAGPVEIDELYVSAGLRGRERDQESRSRGLSSRGRGSYEDDQPPVFTLVDRGSDQRYVVPAKSADESTVRLLLGDHEEES
LTVYTDGFRTYDPLQDDENYQREAVIHGEGEYVDGDAHVNTCESHASLVRRWLSPHRDVSKDKLTPYLRAFQLRHRIFRKPGREALKEIVRTVL
LSLRRRVEQFARTLDALAIDLAGPVEIDELYVSAGLRGRERDQESRSRGLSSRGRGSYEDDQPPVFTLVDRGSDQRYVVPAKSADESTVRLLLGDHEEES
LTVYTDGFRTYDPLQDDENYQREAVIHGEGEYVDGDAHVNTCESHASLVRRWLSPHRDVSKDKLTPYLRAFQLRHRIFRKPGREALKEIVRTVL
Blast result :
Comments
ISHlt1 is 89% aa similar to ISNagr10.
References
1] ISfinder annotation (2016)
2] Ding,J.Y. and Lai,M.C. (2010) Environ Technol 31 (8-9), 905-914.
2] Ding,J.Y. and Lai,M.C. (2010) Environ Technol 31 (8-9), 905-914.