ISHlt1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JHUT02000001 ND Haloterrigena sp.
Haloterrigena sp. H13
DNA section
IS Length : 1002 bp

Ends


IR Length : 27/34

IRL : CGCTCTTGCGAAGTAGATTGTTGGTCAGGGAGAGCTGGCGCTGAGAAAGC
IRR : CGCTCTTGGGAAGCACGTTGTTGGTGAGTCAGAGGACGGTTCGAACGATT

Insertion site


Left flankDirect repeatRight flankDR Length
ACAGTTGGAATATACAATTAAATCTATTAGC8

DNA sequence

CGCTCTTGCGAAGTAGATTGTTGGTCAGGGAGAGCTGGCGCTGAGAAAGCGTAGCGGGCAGGGTGACGCGTCCGCGTCACCCGAATGCAATGTTCCCGTT
TGAGTTGTTGAACTCGGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAAGGCCTCCAGTGCCCGCGCTGCCGGTCTGAGTTAGTGATC
AAGCACGGCAGCTACCGAGTTTATCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGTCGAGACCGGCACGATCTTCGCGCACGCGAAGATCG
GCCTCGACAAGCTCTTGTTCGCGTACTACACGCTGCTCCGGTTCAACACCAGTATTCGCCAATTAGACGCTGAACTCGACGTTTCTTACCTGTCACTGCG
GCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCTAGCCATCGACCTCGCCGGTCCCGTCGAGATCGACGAACTCTACGTGTCTGCGGGGCTCAGA
GGCCGCGAGCGCGACCAAGAGTCGCGCTCGCGTGGCCTTTCGTCGCGTGGACGCGGAAGCTACGAGGATGACCAGCCGCCAGTGTTCACACTCGTTGATC
GCGGCAGCGATCAGCGATACGTCGTCCCAGCAAAATCCGCTGACGAATCGACCGTGCGACTCCTCCTCGGTGACCACGAGGAGGAGTCGCTAACCGTCTA
CACCGACGGATTTCGAACGTACGACCCACTCCAAGATGACGAGAATTACCAGCGAGAAGCGGTCATTCACGGTGAGGGCGAATACGTCGATGGAGACGCC
CACGTGAATACCTGCGAGAGCCACGCGTCGCTGGTGCGACGGTGGCTCTCGCCGCACCGAGACGTCTCAAAAGATAAGCTCACACCATATCTCAGAGCCT
TCCAGCTCCGCCACCGAATCTTCCGCAAACCTGGTCGAGAAGCTCTCAAAGAAATCGTTCGAACCGTCCTCTGACTCACCAACAACGTGCTTCCCAAGAG
CG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa90974+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPFELLNSEASAANLLEQVRWREGLQCPRCRSELVIKHGSYRVYQRYLCKDCDRTFNVETGTIFAHAKIGLDKLLFAYYTLLRFNTSIRQLDAELDVSY
LSLRRRVEQFARTLDALAIDLAGPVEIDELYVSAGLRGRERDQESRSRGLSSRGRGSYEDDQPPVFTLVDRGSDQRYVVPAKSADESTVRLLLGDHEEES
LTVYTDGFRTYDPLQDDENYQREAVIHGEGEYVDGDAHVNTCESHASLVRRWLSPHRDVSKDKLTPYLRAFQLRHRIFRKPGREALKEIVRTVL

 

Blast result :
Comments
ISHlt1 is 89% aa similar to ISNagr10.
References
1] ISfinder annotation (2016)
2] Ding,J.Y. and Lai,M.C. (2010) Environ Technol 31 (8-9), 905-914.