ISCfr14
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_019360 | ND | Citrobacter freundii | Citrobacter freundii Citrobacter freundii plasmid pNDM-CIT |
DNA section
IS Length : 2442 bp
Ends
IR Length : 21/22
IRL : GTAAGCGTACAGCGTGAGCCGTCTGGTCATAATCCGAAGCATCCGACAAA
IRR : GTAAGCGTACAGCGAGAGCCGTATTGACGGGTACGGGTTATTCAGTTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCCTGGTA | ATAAAGTC | TGGCCCAGTA | 8 |
DNA sequence
GTAAGCGTACAGCGTGAGCCGTCTGGTCATAATCCGAAGCATCCGACAAAGTGGTGTCCACCAAATAAGTAGTGGGAACCAAAGTGTCAGATATGCAGAA
AAATGTGACTCCCGGCAGACGTAAAGGCTGTCCTAATTATTCTCCAGAATTTAAGCAGCAACTTGTTGCTGCCTCCTGCGAACCAGGAATATCCATTTCA
AAACTTGCGCTTGAAAATGGCATTAACGCCAATCTGCTGTTCAAATGGCGCCAACAATGGCGCGAGGGAAAGCTGCTATTACCTTCTTCAGAGAGTCCTC
AGCTACTTCCTGTGACTCTCGATGCCGCTGACGTACAGCCAGAACCGCCCACTGAGAGCCCGGAAGCCCTCAGTATCAGCTGTGAGATAACGTTCCGGCA
CGGGACGCTCCGCCTCAACGGCACTGTCAGCGAAAAGTTCCTGGCTCTGCTGATACAGGAGCTGAAGCGATGATCCCGTTACCAACAGGTACCAAAATCT
GGCTGGTTGCCGGTACCACTGATATGAGAAATGGCTTCAACGGTCTTGCCGCAAAAGTACAGACGGCGCTGAAAGACGATCCGATGTCCGGCCACGTCTT
CATCTTCCGGGGTCGCAGCGGCAACCAGGTCAAACTGCTGTGGTCCACCGGCGACGGGCTGTGCCTGCTGACCAAACGACTGGAGCGCGGTCGCTTCGCC
TGGCCCTCTGCCCGTGATGGCAAAGTATTTCTGACTCCGGCACAGCTGGCGATGCTGATGGAAGGCATCGACTGGCGACAACCTAAACGGTTGCTGACAT
CTCTGACCATGTTGTAGGCCTCTTTATCCTGGTTGTTGCTGAATAAGCCTGGTAAAATACGGGCTTATGAACAACACCTCTTCTGACGAAATCCTTCGGC
TGAAACAGCGGCTTGCCGAACAGGAGGCGCTGAACCGCGCCCTGCTGGAAAAGCTGGCCGACCGTGAGCGCGAAATAGACCACCTGCAGGCGCAGCTGGA
TAAACTCCGCCGGATGAACTTCGGCAGCCGTTCCGAAAAAGTATCCCGTCGTATCGCACAGATGGAAGCTGACCTGAAGGTGCTTCAGAAAGAAAGCGAT
ACACTGACCGGTCGTGTGGATGACCCGGAAGTGCAGCGCTCGCTGCGTCAGACCCGCACCCGCAGACCGTTCCCCGAATCACTCCCGCGTGATGAAAAGC
GTATACTTCCAGCCGAATCCTGTTGCCCGGAGTGCGGTGGTTCGCTGAGTTACCTGGGTGAAGATGCCGCCGAACAGCTGGAGCTGATGCGCAGCGCCTT
CCGCGTTATCCGGACAGTACGTGAAAAACATGCCTGTACTCAGTGTGATGCGATAGTGCAGGCAGCCGCGCCTTCACGGCCCATCGAGCGGGGTATCGCC
GGCCCGGGGTTGCTGGCCCGCGTGCTGACCTCAAAGTATGCCGAGCACACACCGCTGTACCGCCAGTCTGAAATATACGGCCGACAGGGCGTGGAGCTGA
GTCGCTCACTGCTGTCGGGCTGGGTGGATGCATGTTGCCGGCTGCTGTCACCGCTGGAAGAGGCGCTTCAGGACTATGTCCTGACCGACGGCAAACTCCA
CGCCGATGACACGCCCGTCCCGGTACTGTTACCAGGTAATAAAAAGACGAAGACCGGACGGTTGTGGACGTACGTTCGTGATGACCGCAACGCCGGGTCA
GCGCTGGCGCCGGCTGTATGGTTCGCTTACAGTCCGGACAGAAAAGGCATCCACCCGCAGAGCCATCTTGCCGGCTTCAGCGGTGTGCTGCAGGCGGATG
CGTATGCCGGGTTCAACGAACTGTACCGCAATGGACAGATAACGGAAGCGGCCTGCTGGGCTCACGCCCGCCGCAAGATCCACGATGTGCACGTTCGCAC
GCCATCAGCGCAGACAGAGGAAGCCCTGAAACGTATCGGCGACCTGTATGCCATTGAGGCTGAAATACGGGGAATGCCGGCAGAGCAACGCCTTGCTGAA
CGTCAGCAAAAAGCGAAACCACGACTGAAATCTCTGGAAAGCTGGCTGCGTGAAAAGATAAAAACCCTGTCGCGACACTCAGAGCTGGCGAAGGCGTTCG
CGTACGCACTGAACCAGTGGCCGGCACTGACGTACTATGCAGACGATGGCTGGGCTGAAGCCGATAACAATATCGCTGAAAATGCGCTGCGGACGGTCAG
CCTGGGCCGCAAAAACTTCCTGTTCTTCGGCTCTGACCACGGTGGTGAGCGCGGAGCACTGCTGTACAGCCTGATCGGTACATGCAAACTGAACGGCGTG
GAGCCAGAGAGCTATCTCCGTCATGTGCTCAACGTCATAGCTGACTGGCCGGTCAATCAGGTCAGCGAACTGTTACCATGGCGCGTAACCCTGCAAACTG
AATAACCCGTACCCGTCAATACGGCTCTCGCTGTACGCTTAC
AAATGTGACTCCCGGCAGACGTAAAGGCTGTCCTAATTATTCTCCAGAATTTAAGCAGCAACTTGTTGCTGCCTCCTGCGAACCAGGAATATCCATTTCA
AAACTTGCGCTTGAAAATGGCATTAACGCCAATCTGCTGTTCAAATGGCGCCAACAATGGCGCGAGGGAAAGCTGCTATTACCTTCTTCAGAGAGTCCTC
AGCTACTTCCTGTGACTCTCGATGCCGCTGACGTACAGCCAGAACCGCCCACTGAGAGCCCGGAAGCCCTCAGTATCAGCTGTGAGATAACGTTCCGGCA
CGGGACGCTCCGCCTCAACGGCACTGTCAGCGAAAAGTTCCTGGCTCTGCTGATACAGGAGCTGAAGCGATGATCCCGTTACCAACAGGTACCAAAATCT
GGCTGGTTGCCGGTACCACTGATATGAGAAATGGCTTCAACGGTCTTGCCGCAAAAGTACAGACGGCGCTGAAAGACGATCCGATGTCCGGCCACGTCTT
CATCTTCCGGGGTCGCAGCGGCAACCAGGTCAAACTGCTGTGGTCCACCGGCGACGGGCTGTGCCTGCTGACCAAACGACTGGAGCGCGGTCGCTTCGCC
TGGCCCTCTGCCCGTGATGGCAAAGTATTTCTGACTCCGGCACAGCTGGCGATGCTGATGGAAGGCATCGACTGGCGACAACCTAAACGGTTGCTGACAT
CTCTGACCATGTTGTAGGCCTCTTTATCCTGGTTGTTGCTGAATAAGCCTGGTAAAATACGGGCTTATGAACAACACCTCTTCTGACGAAATCCTTCGGC
TGAAACAGCGGCTTGCCGAACAGGAGGCGCTGAACCGCGCCCTGCTGGAAAAGCTGGCCGACCGTGAGCGCGAAATAGACCACCTGCAGGCGCAGCTGGA
TAAACTCCGCCGGATGAACTTCGGCAGCCGTTCCGAAAAAGTATCCCGTCGTATCGCACAGATGGAAGCTGACCTGAAGGTGCTTCAGAAAGAAAGCGAT
ACACTGACCGGTCGTGTGGATGACCCGGAAGTGCAGCGCTCGCTGCGTCAGACCCGCACCCGCAGACCGTTCCCCGAATCACTCCCGCGTGATGAAAAGC
GTATACTTCCAGCCGAATCCTGTTGCCCGGAGTGCGGTGGTTCGCTGAGTTACCTGGGTGAAGATGCCGCCGAACAGCTGGAGCTGATGCGCAGCGCCTT
CCGCGTTATCCGGACAGTACGTGAAAAACATGCCTGTACTCAGTGTGATGCGATAGTGCAGGCAGCCGCGCCTTCACGGCCCATCGAGCGGGGTATCGCC
GGCCCGGGGTTGCTGGCCCGCGTGCTGACCTCAAAGTATGCCGAGCACACACCGCTGTACCGCCAGTCTGAAATATACGGCCGACAGGGCGTGGAGCTGA
GTCGCTCACTGCTGTCGGGCTGGGTGGATGCATGTTGCCGGCTGCTGTCACCGCTGGAAGAGGCGCTTCAGGACTATGTCCTGACCGACGGCAAACTCCA
CGCCGATGACACGCCCGTCCCGGTACTGTTACCAGGTAATAAAAAGACGAAGACCGGACGGTTGTGGACGTACGTTCGTGATGACCGCAACGCCGGGTCA
GCGCTGGCGCCGGCTGTATGGTTCGCTTACAGTCCGGACAGAAAAGGCATCCACCCGCAGAGCCATCTTGCCGGCTTCAGCGGTGTGCTGCAGGCGGATG
CGTATGCCGGGTTCAACGAACTGTACCGCAATGGACAGATAACGGAAGCGGCCTGCTGGGCTCACGCCCGCCGCAAGATCCACGATGTGCACGTTCGCAC
GCCATCAGCGCAGACAGAGGAAGCCCTGAAACGTATCGGCGACCTGTATGCCATTGAGGCTGAAATACGGGGAATGCCGGCAGAGCAACGCCTTGCTGAA
CGTCAGCAAAAAGCGAAACCACGACTGAAATCTCTGGAAAGCTGGCTGCGTGAAAAGATAAAAACCCTGTCGCGACACTCAGAGCTGGCGAAGGCGTTCG
CGTACGCACTGAACCAGTGGCCGGCACTGACGTACTATGCAGACGATGGCTGGGCTGAAGCCGATAACAATATCGCTGAAAATGCGCTGCGGACGGTCAG
CCTGGGCCGCAAAAACTTCCTGTTCTTCGGCTCTGACCACGGTGGTGAGCGCGGAGCACTGCTGTACAGCCTGATCGGTACATGCAAACTGAACGGCGTG
GAGCCAGAGAGCTATCTCCGTCATGTGCTCAACGTCATAGCTGACTGGCCGGTCAATCAGGTCAGCGAACTGTTACCATGGCGCGTAACCCTGCAAACTG
AATAACCCGTACCCGTCAATACGGCTCTCGCTGTACGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
402 bp | 133 aa | 72 | 473 | + | No |
AG : IS66 TnpA
ORF sequence :
VGTKVSDMQKNVTPGRRKGCPNYSPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAADVQPEPPTESPEAL
SISCEITFRHGTLRLNGTVSEKFLALLIQELKR
SISCEITFRHGTLRLNGTVSEKFLALLIQELKR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
348 bp | 115 aa | 470 | 817 | + | No |
AG : IS66 TnpB
ORF sequence :
MIPLPTGTKIWLVAGTTDMRNGFNGLAAKVQTALKDDPMSGHVFIFRGRSGNQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLMEGI
DWRQPKRLLTSLTML
DWRQPKRLLTSLTML
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1539 bp | 512 aa | 867 | 2405 | + | No |
Chemistry : DDE
ORF sequence :
MNNTSSDEILRLKQRLAEQEALNRALLEKLADREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLKVLQKESDTLTGRVDDPEVQRSLRQTRTRR
PFPESLPRDEKRILPAESCCPECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAAAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQ
SEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLTDGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQSH
LAGFSGVLQADAYAGFNELYRNGQITEAACWAHARRKIHDVHVRTPSAQTEEALKRIGDLYAIEAEIRGMPAEQRLAERQQKAKPRLKSLESWLREKIKT
LSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRTVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRHVLNVIADWPVNQVS
ELLPWRVTLQTE
PFPESLPRDEKRILPAESCCPECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAAAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQ
SEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLTDGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQSH
LAGFSGVLQADAYAGFNELYRNGQITEAACWAHARRKIHDVHVRTPSAQTEEALKRIGDLYAIEAEIRGMPAEQRLAERQQKAKPRLKSLESWLREKIKT
LSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRTVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRHVLNVIADWPVNQVS
ELLPWRVTLQTE
Blast result :
Comments
ISCfr14 is 91% (orfA), 98% (orfB) and 93% (orfC) aa similar to ISEc8.
References
1] Zhou D. (2016) Direct submission to ISfinder
2] Dolejska,M., Villa,L., Poirel,L., Nordmann,P. and Carattoli,A. (2013) J. Antimicrob. Chemother. 68 (1), 34-39
2] Dolejska,M., Villa,L., Poirel,L., Nordmann,P. and Carattoli,A. (2013) J. Antimicrob. Chemother. 68 (1), 34-39