ISHja1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AOLY01000027 | ND | Haloarcula japonica | Haloarcula japonica DSM 6131 |
DNA section
IS Length : 996 bp
Ends
IR Length : 26/33
IRL : CGCTCTTGCGAAGGAGATTGTTGATAGCGAGAGCTGCGGCTGAAAGTCGA
IRR : CGCTCTTGTGAAGCACGTTGTTGATTTTCAGAGGGCAGCATCAAGAGCAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATATGTTCCCAATANA | TNCGAACTCTACAGAAAA | 0 |
DNA sequence
CGCTCTTGCGAAGGAGATTGTTGATAGCGAGAGCTGCGGCTGAAAGTCGAAGAGGGCAAGGGCACCGCGCCAGCGGTGCCCGATATGTTCCCAATAAGTC
GATTCGTGTCGGAATCGGCTGCAGCGGACCTGTTGCAGCAGGTTCGCTGGCGTGATGGCGTCGAGTGCCCCCGCTGCCGTTCTGACCTGGCGGTCAGAAA
CGGCAGCTATCGGGAGTATCAGCGGTATCTGTGTAAGAATTGCGGCCGGACGTTCAACGACAAGACCGGCACGATCTTCGCTCATTCGAAGCTCTCGCTG
AAAGAGTGGTACTTCACGATCTACGTGTTCTTACGGTTCAACACGAGTATTCGCCAGATCGAGGCAGAGCTCGATCTCTCGTACAGAACGGTGAGACGGC
GCGTCGAGCGCTTCGCCAGCGCGCTCGACGCGCCTTCGATCACACTGTCTGGACCGGTCGAAATCGACGAAGTGTACGTCTCTGCCGGTCTCAAAGGCCG
CGAGCGCGACCAGGAGTCGCGCTCGCGTGGCCTGTCCACGCGTGGACGAGGCTCGTACGACGGCGACAAACCGCCGGTGTTCACGCTGGTCGATCGTGGC
TCGGACGATCGATACGTCGTGCCAGCGAAATCCGCCGATGAATCGACTATTCGACTCCTGCTTGCTGACCACGACGAGGAGTCGCTGACCGTCTATACGG
ACGGATTTCGAGCGTACGAACCGCTCGAAGAAGACGACGCATTCTCCCGCGAATACGTCGTCCACGGCGACGGTGAATACGCTGATGGCGAAGTACACGT
CAACGGTTGCGAGAGCCACGCGTCGCTGACGCGACGGTGGCTCTCGCCCCATCGAGGAGTGTCAAAGGACAAGCTAACACCGTATCTCAGAGCCTTTCAG
CTTCGCTGCGAACTCTACAGAAAACCAGGTGACGAAGCGCTCAAACATGCTCTTGATGCTGCCCTCTGAAAATCAACAACGTGCTTCACAAGAGCG
GATTCGTGTCGGAATCGGCTGCAGCGGACCTGTTGCAGCAGGTTCGCTGGCGTGATGGCGTCGAGTGCCCCCGCTGCCGTTCTGACCTGGCGGTCAGAAA
CGGCAGCTATCGGGAGTATCAGCGGTATCTGTGTAAGAATTGCGGCCGGACGTTCAACGACAAGACCGGCACGATCTTCGCTCATTCGAAGCTCTCGCTG
AAAGAGTGGTACTTCACGATCTACGTGTTCTTACGGTTCAACACGAGTATTCGCCAGATCGAGGCAGAGCTCGATCTCTCGTACAGAACGGTGAGACGGC
GCGTCGAGCGCTTCGCCAGCGCGCTCGACGCGCCTTCGATCACACTGTCTGGACCGGTCGAAATCGACGAAGTGTACGTCTCTGCCGGTCTCAAAGGCCG
CGAGCGCGACCAGGAGTCGCGCTCGCGTGGCCTGTCCACGCGTGGACGAGGCTCGTACGACGGCGACAAACCGCCGGTGTTCACGCTGGTCGATCGTGGC
TCGGACGATCGATACGTCGTGCCAGCGAAATCCGCCGATGAATCGACTATTCGACTCCTGCTTGCTGACCACGACGAGGAGTCGCTGACCGTCTATACGG
ACGGATTTCGAGCGTACGAACCGCTCGAAGAAGACGACGCATTCTCCCGCGAATACGTCGTCCACGGCGACGGTGAATACGCTGATGGCGAAGTACACGT
CAACGGTTGCGAGAGCCACGCGTCGCTGACGCGACGGTGGCTCTCGCCCCATCGAGGAGTGTCAAAGGACAAGCTAACACCGTATCTCAGAGCCTTTCAG
CTTCGCTGCGAACTCTACAGAAAACCAGGTGACGAAGCGCTCAAACATGCTCTTGATGCTGCCCTCTGAAAATCAACAACGTGCTTCACAAGAGCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 885 bp | 294 aa | 85 | 969 | + | No |
Chemistry : DDE
ORF sequence :
MFPISRFVSESAAADLLQQVRWRDGVECPRCRSDLAVRNGSYREYQRYLCKNCGRTFNDKTGTIFAHSKLSLKEWYFTIYVFLRFNTSIRQIEAELDLSY
RTVRRRVERFASALDAPSITLSGPVEIDEVYVSAGLKGRERDQESRSRGLSTRGRGSYDGDKPPVFTLVDRGSDDRYVVPAKSADESTIRLLLADHDEES
LTVYTDGFRAYEPLEEDDAFSREYVVHGDGEYADGEVHVNGCESHASLTRRWLSPHRGVSKDKLTPYLRAFQLRCELYRKPGDEALKHALDAAL
RTVRRRVERFASALDAPSITLSGPVEIDEVYVSAGLKGRERDQESRSRGLSTRGRGSYDGDKPPVFTLVDRGSDDRYVVPAKSADESTIRLLLADHDEES
LTVYTDGFRAYEPLEEDDAFSREYVVHGDGEYADGEVHVNGCESHASLTRRWLSPHRGVSKDKLTPYLRAFQLRCELYRKPGDEALKHALDAAL
Blast result :
Comments
ISHja1 is 88% aa similar to ISHvo5.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.