ISHca2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOJK01000052 ND Halorubrum californiensis
Halorubrum californiensis DSM 19288
DNA section
IS Length : 1001 bp

Ends


IR Length : 22/25

IRL : CGCTCTTCTGTAGGAGATTGTTGATACTGGCGAGCTGTGGCTGTGGAGTC
IRR : CGCTCTTGTGTAGCACATTGTTGATTTCAGAGAGTTGCTTTGACGGCGTG

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGTTTATACGGCGAAGTCAACAAAATCA0

DNA sequence

CGCTCTTCTGTAGGAGATTGTTGATACTGGCGAGCTGTGGCTGTGGAGTCGAAGAGGACAAGCACACCGCGTCAGCGGTGTCCGACACGAATGATTCCGC
TAGATGCGTTTGGGTCGGAATCGGTCGCAACGGACCTGCTCCAACAGGTTCGCTGGCGTGACGGCGTTTCCTGTCCTCGCTGCCGTTCTGACCGAACGGT
CAGAAACGGCAGCTACGGGCAGTTTCAGCGGTATCTGTGTAAGGATTGCGACCGCACGTTCAAGGATAAGACCGACACGATCTTCGCTCATTCGAAGATC
GCACTCCGCAAGTGGCTGTTCTCGATCTGCGCGTTTTTGCGGTTTAACACGAGCCTCAGGCAGTTACAGTGCGAAATCGAGGTTACCTACAAAACGGTCC
ACAGGCGTGTCGAGCGCTTTGCCGAAGCGCTCGACGCGCCGTCACTCGATCTCCGTGACCCGGTTGAAATTGACGAGTTCTACGTCTCTGTTGGCATAAA
AGGCCGCGAGCGCGACCGCTGGTCGCGCTCTCGCGGCCTCGCCCGACGCGGGCGCGGAACGTATGATCAAGACAAACCGCCTGTGTTCATTCTCGTGGAT
CGCGGCACCGAGCAACAGTACGTTGTGCCAGCGAAATCCGCAGACGAATCGACGATCCGGCTCCTGCTGGCTGACCGCCAACAGGAGCCTTTCACCGTCT
ATACCGACGGATTTTGCGCGTACGATCCGCTTACAGAAGACGCCCAATCCGACCGCGAATACGTCGTTCACGGCGACGGCGAATACGCCGACGACACGGT
CCACGTGAACACCTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCATCTCAAAAGACCGCCTCACACAGTATCTCCGAGTG
TTCCAACTCAGACGAGAGTTCTATCACAAACCCGGATAAAAAGCGCTCAAACACGCCGTCAAAGCAACTCTCTGAAATCAACAATGTGCTACACAAGAGC
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
849 bp282 aa91939+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPLDAFGSESVATDLLQQVRWRDGVSCPRCRSDRTVRNGSYGQFQRYLCKDCDRTFKDKTDTIFAHSKIALRKWLFSICAFLRFNTSLRQLQCEIEVTY
KTVHRRVERFAEALDAPSLDLRDPVEIDEFYVSVGIKGRERDRWSRSRGLARRGRGTYDQDKPPVFILVDRGTEQQYVVPAKSADESTIRLLLADRQQEP
FTVYTDGFCAYDPLTEDAQSDREYVVHGDGEYADDTVHVNTCESHASLARRWLSPHRGISKDRLTQYLRVFQLRREFYHKPG

 

Blast result :
Comments
ISHca2 is 93% aa similar to ISNpe22.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.