ISHals2
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLD01000012 | ND | Haloferax sp. | Haloferax sp. ATCC BAA-646 |
DNA section
IS Length : 1038 bp
Ends
IR Length : 25/26
IRL : CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTATGG
IRR : CGCTCTTACGCAAAGCTACGGAAACGGTGGAGGGTGAAGCAATCGATGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGTTATTTATCGA | ACTCATGACCAAA | 0 |
DNA sequence
CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTATGGCGAGTATGTCTACAATCCAGCCAACCTTCGGCGGAATGCTTGGAAACCTA
ATCGACGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGACTCAAGCAACTCTGGGAGCACACACCGTGCCCTCGCTGCG
GAAATCGGATGATCAGAACGTGGGAGCACCCTGACCGTGTCTGGTGTCGCAGCTGCCAGTTCAAACCCGCCTACACCTACGGCACACCCTTCAGCGAGAA
GGACCTCCCCGCAGGCGAGGTCCTTCTCGCGTTCATTCTCTACGCAGATACCTTGCTCGGCATCAATCAAATCGCGATTGTGCTTGACCGCGCGTACAAC
ACGATTCACACAGCAATTCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCAATTGTCTGGAACCGTCTTAAACGGCCGCACAGCGGTCCATTACAAA
TCGATGAGAGCGGCAAAGTCTGCTCAGGATACAAGGGCCAAGACCCGCCGCGAACCCGTCCGGGCCGCGGCGGGTCGTTTCGAAGAGGACGCACTCGATG
GCAGGGGCGTCACGGTGATCAACTAACGCTCGTCGCGGCCTGCCGCGACGAACTCACTGTCATTCGCGCGAAGAAAGGAATTCGCTACGAGGGTGATCTT
GGCCCAGTAATTGAGGAGGCTGAAGACCTCTCCCAGCCACTGGGAGTGGTCTGGACTGATGGACTCCAAGCGTATCGCTGGATGGAGTACGACCACCGGA
CAGTCATCCACGAGGAACGGTACGTTTCGCCGGACGGCGTCCACATCAATCAGGTTGAGTGTCTGTGGTCACTCCTGCACCCGTGGCTGCGGAAGTTCCA
CGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGCTGCGTTCGGTCCTTGAACAGGATCGGCGCGTCACTGTTCGCACTCATCGATTGC
TTCACCCTCCACCGTTTCCGTAGCTTTGCGTAAGAGCG
ATCGACGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGACTCAAGCAACTCTGGGAGCACACACCGTGCCCTCGCTGCG
GAAATCGGATGATCAGAACGTGGGAGCACCCTGACCGTGTCTGGTGTCGCAGCTGCCAGTTCAAACCCGCCTACACCTACGGCACACCCTTCAGCGAGAA
GGACCTCCCCGCAGGCGAGGTCCTTCTCGCGTTCATTCTCTACGCAGATACCTTGCTCGGCATCAATCAAATCGCGATTGTGCTTGACCGCGCGTACAAC
ACGATTCACACAGCAATTCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCAATTGTCTGGAACCGTCTTAAACGGCCGCACAGCGGTCCATTACAAA
TCGATGAGAGCGGCAAAGTCTGCTCAGGATACAAGGGCCAAGACCCGCCGCGAACCCGTCCGGGCCGCGGCGGGTCGTTTCGAAGAGGACGCACTCGATG
GCAGGGGCGTCACGGTGATCAACTAACGCTCGTCGCGGCCTGCCGCGACGAACTCACTGTCATTCGCGCGAAGAAAGGAATTCGCTACGAGGGTGATCTT
GGCCCAGTAATTGAGGAGGCTGAAGACCTCTCCCAGCCACTGGGAGTGGTCTGGACTGATGGACTCCAAGCGTATCGCTGGATGGAGTACGACCACCGGA
CAGTCATCCACGAGGAACGGTACGTTTCGCCGGACGGCGTCCACATCAATCAGGTTGAGTGTCTGTGGTCACTCCTGCACCCGTGGCTGCGGAAGTTCCA
CGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGCTGCGTTCGGTCCTTGAACAGGATCGGCGCGTCACTGTTCGCACTCATCGATTGC
TTCACCCTCCACCGTTTCCGTAGCTTTGCGTAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 47 | 1033 | + | No |
Chemistry : DDE
ORF sequence :
MASMSTIQPTFGGMLGNLIDDGILELRTEPLDALVERRLKQLWEHTPCPRCGNRMIRTWEHPDRVWCRSCQFKPAYTYGTPFSEKDLPAGEVLLAFILYA
DTLLGINQIAIVLDRAYNTIHTAIRDLEAALERGFPIVWNRLKRPHSGPLQIDESGKVCSGYKGQDPPRTRPGRGGSFRRGRTRWQGRHGDQLTLVAACR
DELTVIRAKKGIRYEGDLGPVIEEAEDLSQPLGVVWTDGLQAYRWMEYDHRTVIHEERYVSPDGVHINQVECLWSLLHPWLRKFHGLSKQGLEQAAHTFG
CVRSLNRIGASLFALIDCFTLHRFRSFA
DTLLGINQIAIVLDRAYNTIHTAIRDLEAALERGFPIVWNRLKRPHSGPLQIDESGKVCSGYKGQDPPRTRPGRGGSFRRGRTRWQGRHGDQLTLVAACR
DELTVIRAKKGIRYEGDLGPVIEEAEDLSQPLGVVWTDGLQAYRWMEYDHRTVIHEERYVSPDGVHINQVECLWSLLHPWLRKFHGLSKQGLEQAAHTFG
CVRSLNRIGASLFALIDCFTLHRFRSFA
Blast result :
Comments
ISHals2 is 95% aa similar to ISHrub1.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.