ISHals2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLD01000012 ND Haloferax sp.
Haloferax sp. ATCC BAA-646
DNA section
IS Length : 1038 bp

Ends


IR Length : 25/26

IRL : CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTATGG
IRR : CGCTCTTACGCAAAGCTACGGAAACGGTGGAGGGTGAAGCAATCGATGAG

Insertion site


Left flankDirect repeatRight flankDR Length
CCGTTATTTATCGAACTCATGACCAAA0

DNA sequence

CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTATGGCGAGTATGTCTACAATCCAGCCAACCTTCGGCGGAATGCTTGGAAACCTA
ATCGACGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGACTCAAGCAACTCTGGGAGCACACACCGTGCCCTCGCTGCG
GAAATCGGATGATCAGAACGTGGGAGCACCCTGACCGTGTCTGGTGTCGCAGCTGCCAGTTCAAACCCGCCTACACCTACGGCACACCCTTCAGCGAGAA
GGACCTCCCCGCAGGCGAGGTCCTTCTCGCGTTCATTCTCTACGCAGATACCTTGCTCGGCATCAATCAAATCGCGATTGTGCTTGACCGCGCGTACAAC
ACGATTCACACAGCAATTCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCAATTGTCTGGAACCGTCTTAAACGGCCGCACAGCGGTCCATTACAAA
TCGATGAGAGCGGCAAAGTCTGCTCAGGATACAAGGGCCAAGACCCGCCGCGAACCCGTCCGGGCCGCGGCGGGTCGTTTCGAAGAGGACGCACTCGATG
GCAGGGGCGTCACGGTGATCAACTAACGCTCGTCGCGGCCTGCCGCGACGAACTCACTGTCATTCGCGCGAAGAAAGGAATTCGCTACGAGGGTGATCTT
GGCCCAGTAATTGAGGAGGCTGAAGACCTCTCCCAGCCACTGGGAGTGGTCTGGACTGATGGACTCCAAGCGTATCGCTGGATGGAGTACGACCACCGGA
CAGTCATCCACGAGGAACGGTACGTTTCGCCGGACGGCGTCCACATCAATCAGGTTGAGTGTCTGTGGTCACTCCTGCACCCGTGGCTGCGGAAGTTCCA
CGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGCTGCGTTCGGTCCTTGAACAGGATCGGCGCGTCACTGTTCGCACTCATCGATTGC
TTCACCCTCCACCGTTTCCGTAGCTTTGCGTAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
987 bp328 aa471033+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASMSTIQPTFGGMLGNLIDDGILELRTEPLDALVERRLKQLWEHTPCPRCGNRMIRTWEHPDRVWCRSCQFKPAYTYGTPFSEKDLPAGEVLLAFILYA
DTLLGINQIAIVLDRAYNTIHTAIRDLEAALERGFPIVWNRLKRPHSGPLQIDESGKVCSGYKGQDPPRTRPGRGGSFRRGRTRWQGRHGDQLTLVAACR
DELTVIRAKKGIRYEGDLGPVIEEAEDLSQPLGVVWTDGLQAYRWMEYDHRTVIHEERYVSPDGVHINQVECLWSLLHPWLRKFHGLSKQGLEQAAHTFG
CVRSLNRIGASLFALIDCFTLHRFRSFA

 

Blast result :
Comments
ISHals2 is 95% aa similar to ISHrub1.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.