ISNasp1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MASN01000048 ND Natrialba sp.
Natrialba sp. SSL1
DNA section
IS Length : 1046 bp

Ends


IR Length : 26/33

IRL : CGCTCTTGTGTAGACCTACGGAAAGACCCTATAGTTACACTAAGCCAGCC
IRR : CGCTCTTATGTAGAGCTGTGGAATGCCCCGATAACGAGACAATCAATGGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTCTTCCCCGCCATCTTAACCAACAA8

DNA sequence

CGCTCTTGTGTAGACCTACGGAAAGACCCTATAGTTACACTAAGCCAGCCATAATCTTGGAGTATGTCTTCTGCTCAGCCGGCGTTCGGAGCAATGTTTC
GAGAGCTGATCGAGCTGGGCGTCGTCGAGATTGACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAATTCTGGGAGAATACGTCCTGTCC
ACGGTGCGGGCACACCACCGTTCAAACGTGGCCACATCTCGACCGCGTGTGGTGCCGTAACTGCAATTTCAAGCCGGTCTACACCTACGGAACGCCGTTT
CACGAGAAGCACCTCTCCAGTGGCGAGGTGCTTCTCGCGTTCACGCTCTACGCCGATACATTGCTCAGTATTAACCAGATCGCGTCCTTGCTCAGTCGGG
CCTACAAAACCGTTCATACGGCGATTCGAGAGGTGGAAGCCGCGATCCATCGCGGCTTCCCCGTCGTCTGGAATCTCCTTGACCAGACCATCGATGGACC
GTCACAAGTCGACGAATCTGGCACAGTCTGTTCGGGCTACAAAGGCCAAGAGCCGCCGCGGAACAGTCGTTCTCGCGGCGGCTCGTCTCAATCTGGCCGC
TCACGCTGGCGGGGCCGCCATGGTGCTCAGTTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGCGTGATCCGCGGCCAGCTCGGTATTGACTTCGGCG
GTGATCTGAAACCAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCGGCTGGGAGAGGTCTGGACCGACGGACTCCAAGCCTACAGAGAGATGGAGCGTGA
CCACCGAACAGTCGTACACAAAGAGAGATACGTATCGCCCGACGGCGTCCACATTAACCAGGCTGAGTGCCTCTTTTCGCTCGTTCAACCGTGGCTACGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAACTGGCCGCTCACACCTTCGGTATCGTTCGCTCACTCACTCTGGCTGGCGAATCTGTCGAGTCAGCCA
TTGATTGTCTCGTTATCGGGGCATTCCACAGCTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa641041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSAQPAFGAMFRELIELGVVEIDTEPLDARIERRLKEFWENTSCPRCGHTTVQTWPHLDRVWCRNCNFKPVYTYGTPFHEKHLSSGEVLLAFTLYADTL
LSINQIASLLSRAYKTVHTAIREVEAAIHRGFPVVWNLLDQTIDGPSQVDESGTVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGAQLTLVAACRDSL
RVIRGQLGIDFGGDLKPVIQEAEDLSQRLGEVWTDGLQAYREMERDHRTVVHKERYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLELAAHTFGIVR
SLTLAGESVESAIDCLVIGAFHSST

 

Blast result :
Comments
ISNasp1 is 94% aa similar to ISHsi3.
References
1] ISfinder annotation (2016)
2] Kalambe,G.N., Chandarana,P.M., Tanavde,V.M. and Upasani,V.N. (2016) Direct GenBank submission.