ISNpa1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOII01000061 ND Natrinema pallidum
Natrinema pallidum DSM 3751
DNA section
IS Length : 1046 bp

Ends


IR Length : 29/33

IRL : CGCTCTTATGTAGAACTGCGGAAAGACCGTATAGTTACACTGAGCCGGTA
IRR : CGCTCTTATGTAGAGCTGCGGAAAGCCCCCATAACAAGGCAATCGATGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTTGGTTAAGAGTATGTAGTCCCACG8

DNA sequence

CGCTCTTATGTAGAACTGCGGAAAGACCGTATAGTTACACTGAGCCGGTACTAATCTGGCAATATGGCTTCTACTCAGCCAGCGTTCGGCGGGATGTTTC
GGCAGCTGATTGAGCTGGGAGTTATCGAAATCAACACGGAGCCGCTCGATGCCTGTATCGAGCGGCGACTCAAAGAGTTCTGGGAGAATACATCCTGTCC
ACGCTGCGGTCACCAGCGTCTCATGACATCGGAGACCAGTGACCGGGTTCGATGTCGTGATTGTAATTTTAAGCCGGTCTACACCTACGGAACACCGTTT
CACGAGAAGCACCTCACCGCAGGAGAGGTGCTTCTCGCTTTCCTCCTCTACGCAGACACGCTGCTGAGTATCAACCAGATCGCGCCGCTACTTGGGCGCG
CTTACAAGACCGTTCACACAGCGATACGAGACGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTTTGGGAGCTGCTCGACCAGACCACCGACGGGCC
GACACAGGTCGACGAATCTGGGAAGGTCTGTTCAGGCTACAAGGGTCAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAATCTGGCCGC
TCACGCTGGCGGGGCCGCCACGGAGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGTGTGATTCGCGGCCAACGTGGTATCGACTACAAAG
GCGATCTCGAGCCAGTGATTCAGGAGACTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACGGACGGCCTCCAAGCGTACCGCGAGATGGATCGTGA
CCATCGAACGGTTGTCCACAAAGAGCGGTATGTATCGCCCGACGGAGTCCACATTAACCAAGCTGAGTGCCTGTTTTCGCTCGCTCAACCGTGGCTCCGA
AAGTTCCGCGGCCTGTCCAAGCGGGGCTTGGAACAGGCCGCTCACACGTTCGGCCTCATCAGATCGTTGAACCTCACCGGCGCATCCGTCGATATCACCA
TCGATTGCCTTGTTATGGGGGCTTTCCGCAGCTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa941041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFRQLIELGVIEINTEPLDACIERRLKEFWENTSCPRCGHQRLMTSETSDRVRCRDCNFKPVYTYGTPFHEKHLTAGEVLLAFLLYADTLLSINQIAPLL
GRAYKTVHTAIRDVEAAVQRGFPVVWELLDQTTDGPTQVDESGKVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGDQLTLVAACRDSLRVIRGQRGID
YKGDLEPVIQETEDLSQPLGEVWTDGLQAYREMDRDHRTVVHKERYVSPDGVHINQAECLFSLAQPWLRKFRGLSKRGLEQAAHTFGLIRSLNLTGASVD
ITIDCLVMGAFRSST

 

Blast result :
Comments
ISNpa1 is 93% aa similar to ISHsi3.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.