ISNpa1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOII01000061 | ND | Natrinema pallidum | Natrinema pallidum DSM 3751 |
DNA section
IS Length : 1046 bp
Ends
IR Length : 29/33
IRL : CGCTCTTATGTAGAACTGCGGAAAGACCGTATAGTTACACTGAGCCGGTA
IRR : CGCTCTTATGTAGAGCTGCGGAAAGCCCCCATAACAAGGCAATCGATGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTTGGTTA | AGAGTATG | TAGTCCCACG | 8 |
DNA sequence
CGCTCTTATGTAGAACTGCGGAAAGACCGTATAGTTACACTGAGCCGGTACTAATCTGGCAATATGGCTTCTACTCAGCCAGCGTTCGGCGGGATGTTTC
GGCAGCTGATTGAGCTGGGAGTTATCGAAATCAACACGGAGCCGCTCGATGCCTGTATCGAGCGGCGACTCAAAGAGTTCTGGGAGAATACATCCTGTCC
ACGCTGCGGTCACCAGCGTCTCATGACATCGGAGACCAGTGACCGGGTTCGATGTCGTGATTGTAATTTTAAGCCGGTCTACACCTACGGAACACCGTTT
CACGAGAAGCACCTCACCGCAGGAGAGGTGCTTCTCGCTTTCCTCCTCTACGCAGACACGCTGCTGAGTATCAACCAGATCGCGCCGCTACTTGGGCGCG
CTTACAAGACCGTTCACACAGCGATACGAGACGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTTTGGGAGCTGCTCGACCAGACCACCGACGGGCC
GACACAGGTCGACGAATCTGGGAAGGTCTGTTCAGGCTACAAGGGTCAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAATCTGGCCGC
TCACGCTGGCGGGGCCGCCACGGAGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGTGTGATTCGCGGCCAACGTGGTATCGACTACAAAG
GCGATCTCGAGCCAGTGATTCAGGAGACTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACGGACGGCCTCCAAGCGTACCGCGAGATGGATCGTGA
CCATCGAACGGTTGTCCACAAAGAGCGGTATGTATCGCCCGACGGAGTCCACATTAACCAAGCTGAGTGCCTGTTTTCGCTCGCTCAACCGTGGCTCCGA
AAGTTCCGCGGCCTGTCCAAGCGGGGCTTGGAACAGGCCGCTCACACGTTCGGCCTCATCAGATCGTTGAACCTCACCGGCGCATCCGTCGATATCACCA
TCGATTGCCTTGTTATGGGGGCTTTCCGCAGCTCTACATAAGAGCG
GGCAGCTGATTGAGCTGGGAGTTATCGAAATCAACACGGAGCCGCTCGATGCCTGTATCGAGCGGCGACTCAAAGAGTTCTGGGAGAATACATCCTGTCC
ACGCTGCGGTCACCAGCGTCTCATGACATCGGAGACCAGTGACCGGGTTCGATGTCGTGATTGTAATTTTAAGCCGGTCTACACCTACGGAACACCGTTT
CACGAGAAGCACCTCACCGCAGGAGAGGTGCTTCTCGCTTTCCTCCTCTACGCAGACACGCTGCTGAGTATCAACCAGATCGCGCCGCTACTTGGGCGCG
CTTACAAGACCGTTCACACAGCGATACGAGACGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTTTGGGAGCTGCTCGACCAGACCACCGACGGGCC
GACACAGGTCGACGAATCTGGGAAGGTCTGTTCAGGCTACAAGGGTCAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAATCTGGCCGC
TCACGCTGGCGGGGCCGCCACGGAGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGTGTGATTCGCGGCCAACGTGGTATCGACTACAAAG
GCGATCTCGAGCCAGTGATTCAGGAGACTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACGGACGGCCTCCAAGCGTACCGCGAGATGGATCGTGA
CCATCGAACGGTTGTCCACAAAGAGCGGTATGTATCGCCCGACGGAGTCCACATTAACCAAGCTGAGTGCCTGTTTTCGCTCGCTCAACCGTGGCTCCGA
AAGTTCCGCGGCCTGTCCAAGCGGGGCTTGGAACAGGCCGCTCACACGTTCGGCCTCATCAGATCGTTGAACCTCACCGGCGCATCCGTCGATATCACCA
TCGATTGCCTTGTTATGGGGGCTTTCCGCAGCTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 94 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MFRQLIELGVIEINTEPLDACIERRLKEFWENTSCPRCGHQRLMTSETSDRVRCRDCNFKPVYTYGTPFHEKHLTAGEVLLAFLLYADTLLSINQIAPLL
GRAYKTVHTAIRDVEAAVQRGFPVVWELLDQTTDGPTQVDESGKVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGDQLTLVAACRDSLRVIRGQRGID
YKGDLEPVIQETEDLSQPLGEVWTDGLQAYREMDRDHRTVVHKERYVSPDGVHINQAECLFSLAQPWLRKFRGLSKRGLEQAAHTFGLIRSLNLTGASVD
ITIDCLVMGAFRSST
GRAYKTVHTAIRDVEAAVQRGFPVVWELLDQTTDGPTQVDESGKVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGDQLTLVAACRDSLRVIRGQRGID
YKGDLEPVIQETEDLSQPLGEVWTDGLQAYREMDRDHRTVVHKERYVSPDGVHINQAECLFSLAQPWLRKFRGLSKRGLEQAAHTFGLIRSLNLTGASVD
ITIDCLVMGAFRSST
Blast result :
Comments
ISNpa1 is 93% aa similar to ISHsi3.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.