ISHko5

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOJH01000006 ND Halorubrum kocurii
Halorubrum kocurii JCM 14978
DNA section
IS Length : 1134 bp

Ends


IR Length : 29/34

IRL : CGCTCTTATGTAGAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCG
IRR : CGCTCTTATGTAGAACTACGGAAAGACCCGATAACGAGACACTCAACCGC

Insertion site


Left flankDirect repeatRight flankDR Length
ACTGTTGGTTAAGACTGAANTCGTTCACTCACTCTC0

DNA sequence

CGCTCTTATGTAGAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCGGTAATCGGGAGGTATGACCTCCACTGAGCCAGCGTTNACGCTCTTATGTA
GAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCGGTAATCGGGAGGTATGACCTCCACTGAGCCAGCGTTCGGTCGTCTGTTTCAGCAGCTGATTG
AATTAGATGTCATCAAGATCGATACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAGTTCTGGGAGAACACATCCTGTCCTCGTTGCGGGAA
TCAGCGTATCGTCACGTGGGAGAATACGGACCGTATTTGGTGTCGAGACTGTGATTTCAAGCCGGCCTACACCTACGGAACGCCCTTCCACGAGAAGCAT
CTCACCTGCGGCGAGATACTTCTCGCGTTCACGCTCTACGCCGATACGTTGCTCAGTATCAACCAGATTGCGCCGCTTCTCGATCGAGCCTACAAAACCG
TTCACACGGTGATTCGAGAGGTGGAAGCCGCGGTTCAGCGCGGCTTTCCCGCGGTTTGGAAGCACCTCGACCAGATCATCGATGGACCAACGCAAGTCGA
CGAATCTGGCAGGGTTTGTTCGGGCTACAAAGGACAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCACAGTCTGGCCGGTCACGCTGGCGG
GGGCGCCACGGTGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCACTGCGCGTGATTCGTGGACACCGTGGAATCGACTATCAAGACGATCTTGAGC
CAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTACCGAGAGATGGATCGGACCCACCGAACAGT
CGTCCACAAAGAGAGATACGTATCGCCCGACGGAGTCCACATCAACCAATCTGAGTGTCTGTTTTCAATCGTCCAGCCGTGGCTACGGAAGTTCCGCGGC
CTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGTATCGTTCGTTCACTCACTCTCGCCGGAGGATCTGTCGAGACAGCGGTTGAGTGTCTCG
TTATCGGGTCTTTCCGTAGTTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa1521129+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTSTEPAFGRLFQQLIELDVIKIDTEPLDARIERRLKEFWENTSCPRCGNQRIVTWENTDRIWCRDCDFKPAYTYGTPFHEKHLTCGEILLAFTLYADTL
LSINQIAPLLDRAYKTVHTVIREVEAAVQRGFPAVWKHLDQIIDGPTQVDESGRVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGDQLTLVAACRDSL
RVIRGHRGIDYQDDLEPVIQEAEDLSQPLGEVWTDGLQAYREMDRTHRTVVHKERYVSPDGVHINQSECLFSIVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLTLAGGSVETAVECLVIGSFRSST

 

Blast result :
Comments
ISHko5 is 84% aa similar to ISHli6.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784