ISHko5
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOJH01000006 | ND | Halorubrum kocurii | Halorubrum kocurii JCM 14978 |
DNA section
IS Length : 1134 bp
Ends
IR Length : 29/34
IRL : CGCTCTTATGTAGAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCG
IRR : CGCTCTTATGTAGAACTACGGAAAGACCCGATAACGAGACACTCAACCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTGTTGGTTAAGACTGAA | NTCGTTCACTCACTCTC | 0 |
DNA sequence
CGCTCTTATGTAGAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCGGTAATCGGGAGGTATGACCTCCACTGAGCCAGCGTTNACGCTCTTATGTA
GAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCGGTAATCGGGAGGTATGACCTCCACTGAGCCAGCGTTCGGTCGTCTGTTTCAGCAGCTGATTG
AATTAGATGTCATCAAGATCGATACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAGTTCTGGGAGAACACATCCTGTCCTCGTTGCGGGAA
TCAGCGTATCGTCACGTGGGAGAATACGGACCGTATTTGGTGTCGAGACTGTGATTTCAAGCCGGCCTACACCTACGGAACGCCCTTCCACGAGAAGCAT
CTCACCTGCGGCGAGATACTTCTCGCGTTCACGCTCTACGCCGATACGTTGCTCAGTATCAACCAGATTGCGCCGCTTCTCGATCGAGCCTACAAAACCG
TTCACACGGTGATTCGAGAGGTGGAAGCCGCGGTTCAGCGCGGCTTTCCCGCGGTTTGGAAGCACCTCGACCAGATCATCGATGGACCAACGCAAGTCGA
CGAATCTGGCAGGGTTTGTTCGGGCTACAAAGGACAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCACAGTCTGGCCGGTCACGCTGGCGG
GGGCGCCACGGTGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCACTGCGCGTGATTCGTGGACACCGTGGAATCGACTATCAAGACGATCTTGAGC
CAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTACCGAGAGATGGATCGGACCCACCGAACAGT
CGTCCACAAAGAGAGATACGTATCGCCCGACGGAGTCCACATCAACCAATCTGAGTGTCTGTTTTCAATCGTCCAGCCGTGGCTACGGAAGTTCCGCGGC
CTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGTATCGTTCGTTCACTCACTCTCGCCGGAGGATCTGTCGAGACAGCGGTTGAGTGTCTCG
TTATCGGGTCTTTCCGTAGTTCTACATAAGAGCG
GAAACGCGGAAAGACCGTATAATTACACTAAGTCGCCGGTAATCGGGAGGTATGACCTCCACTGAGCCAGCGTTCGGTCGTCTGTTTCAGCAGCTGATTG
AATTAGATGTCATCAAGATCGATACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAGTTCTGGGAGAACACATCCTGTCCTCGTTGCGGGAA
TCAGCGTATCGTCACGTGGGAGAATACGGACCGTATTTGGTGTCGAGACTGTGATTTCAAGCCGGCCTACACCTACGGAACGCCCTTCCACGAGAAGCAT
CTCACCTGCGGCGAGATACTTCTCGCGTTCACGCTCTACGCCGATACGTTGCTCAGTATCAACCAGATTGCGCCGCTTCTCGATCGAGCCTACAAAACCG
TTCACACGGTGATTCGAGAGGTGGAAGCCGCGGTTCAGCGCGGCTTTCCCGCGGTTTGGAAGCACCTCGACCAGATCATCGATGGACCAACGCAAGTCGA
CGAATCTGGCAGGGTTTGTTCGGGCTACAAAGGACAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCACAGTCTGGCCGGTCACGCTGGCGG
GGGCGCCACGGTGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCACTGCGCGTGATTCGTGGACACCGTGGAATCGACTATCAAGACGATCTTGAGC
CAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTACCGAGAGATGGATCGGACCCACCGAACAGT
CGTCCACAAAGAGAGATACGTATCGCCCGACGGAGTCCACATCAACCAATCTGAGTGTCTGTTTTCAATCGTCCAGCCGTGGCTACGGAAGTTCCGCGGC
CTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGTATCGTTCGTTCACTCACTCTCGCCGGAGGATCTGTCGAGACAGCGGTTGAGTGTCTCG
TTATCGGGTCTTTCCGTAGTTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 152 | 1129 | + | No |
Chemistry : DDE
ORF sequence :
MTSTEPAFGRLFQQLIELDVIKIDTEPLDARIERRLKEFWENTSCPRCGNQRIVTWENTDRIWCRDCDFKPAYTYGTPFHEKHLTCGEILLAFTLYADTL
LSINQIAPLLDRAYKTVHTVIREVEAAVQRGFPAVWKHLDQIIDGPTQVDESGRVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGDQLTLVAACRDSL
RVIRGHRGIDYQDDLEPVIQEAEDLSQPLGEVWTDGLQAYREMDRTHRTVVHKERYVSPDGVHINQSECLFSIVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLTLAGGSVETAVECLVIGSFRSST
LSINQIAPLLDRAYKTVHTVIREVEAAVQRGFPAVWKHLDQIIDGPTQVDESGRVCSGYKGQEPPRNSRSRGGSSQSGRSRWRGRHGDQLTLVAACRDSL
RVIRGHRGIDYQDDLEPVIQEAEDLSQPLGEVWTDGLQAYREMDRTHRTVVHKERYVSPDGVHINQSECLFSIVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLTLAGGSVETAVECLVIGSFRSST
Blast result :
Comments
ISHko5 is 84% aa similar to ISHli6.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784