ISNje2
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOIA01000057 | ND | Natronococcus jeotgali | Natronococcus jeotgali DSM 18795 |
DNA section
IS Length : 1038 bp
Ends
IR Length : 24
IRL : CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATCCCGCCGACGTATGG
IRR : CGCTCTTACGCAAAGCTACGGAAACGACCGGGGGTGAAGCAATCGATGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGACGATTC | GCACAGGT | TAACCAACAC | 8 |
DNA sequence
CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATCCCGCCGACGTATGGCGGATATGTCTCACACCCAGCCAGCCTTCGGCGGGATGCTTCGGAACTTA
ATCGATGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGTCTCAAACATCTCTGGGAGCATACACCGTGTCCTCAATGCG
GAAATCGGTCGATCAGAACGTGGGAGAACGTTGATCGTGTCTGGTGCCGGAGCTGCCAGTTCAAACCCGCCTACACCTACGGCACACCCTTCAGTGAGAA
GGACCTCACCTGCGGGGAGGTCCTTCTCGCGTTCATTCTCTACGCTGATACGCTACTCAGCATCAATCAAATCGCGATTGTGCTTGATCGCGCGTACAAC
ACGATTCACACCGCTATCCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCGGTTGTCTGGAACCGACTCAAACAGCCATACAGCGGCCCGTTACAGG
TCGACGAGAGTGGAAAAGTGTGCTCGGGATACAAAGGTCAAGACCCGCCGCGGCCCGGACGGGCTCGCGGCGGGTCGTCTCGGAGTGGGCGAACACGATG
GCAAGGACGTCACGGCGACCAATTGACGCTCGTCGCGGCCTGCCGCGACGAGCTCACTGTCATTCGTGCAAAGAAAGGAATCCGCTACGAGGGTGATCTT
GAGCCGCTGATTACGGAGGCTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACCGATGGACTGCAGGCATATCGGTGGATGGAATACGATCACCGGA
CGGTCATCCACAAAGAGCAGTACATTTCGCCGGACGGCGTCCATATTAACCAGGTTGAGTGTCTCTGGTCACTCTTGCATCCGTGGCTGCGGAAGTTTCG
CGGCCTGTCCAAGCACGGCTTGGAACAGGCCGCTCACACCTTTGGCTGCGTCTGGTCATTGAACAACATCGGCGCGTCGCTCTTCGCACTCATCGATTGC
TTCACCCCCGGTCGTTTCCGTAGCTTTGCGTAAGAGCG
ATCGATGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGTCTCAAACATCTCTGGGAGCATACACCGTGTCCTCAATGCG
GAAATCGGTCGATCAGAACGTGGGAGAACGTTGATCGTGTCTGGTGCCGGAGCTGCCAGTTCAAACCCGCCTACACCTACGGCACACCCTTCAGTGAGAA
GGACCTCACCTGCGGGGAGGTCCTTCTCGCGTTCATTCTCTACGCTGATACGCTACTCAGCATCAATCAAATCGCGATTGTGCTTGATCGCGCGTACAAC
ACGATTCACACCGCTATCCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCGGTTGTCTGGAACCGACTCAAACAGCCATACAGCGGCCCGTTACAGG
TCGACGAGAGTGGAAAAGTGTGCTCGGGATACAAAGGTCAAGACCCGCCGCGGCCCGGACGGGCTCGCGGCGGGTCGTCTCGGAGTGGGCGAACACGATG
GCAAGGACGTCACGGCGACCAATTGACGCTCGTCGCGGCCTGCCGCGACGAGCTCACTGTCATTCGTGCAAAGAAAGGAATCCGCTACGAGGGTGATCTT
GAGCCGCTGATTACGGAGGCTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACCGATGGACTGCAGGCATATCGGTGGATGGAATACGATCACCGGA
CGGTCATCCACAAAGAGCAGTACATTTCGCCGGACGGCGTCCATATTAACCAGGTTGAGTGTCTCTGGTCACTCTTGCATCCGTGGCTGCGGAAGTTTCG
CGGCCTGTCCAAGCACGGCTTGGAACAGGCCGCTCACACCTTTGGCTGCGTCTGGTCATTGAACAACATCGGCGCGTCGCTCTTCGCACTCATCGATTGC
TTCACCCCCGGTCGTTTCCGTAGCTTTGCGTAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 47 | 1033 | + | No |
Chemistry : DDE
ORF sequence :
MADMSHTQPAFGGMLRNLIDDGILELRTEPLDALVERRLKHLWEHTPCPQCGNRSIRTWENVDRVWCRSCQFKPAYTYGTPFSEKDLTCGEVLLAFILYA
DTLLSINQIAIVLDRAYNTIHTAIRDLEAALERGFPVVWNRLKQPYSGPLQVDESGKVCSGYKGQDPPRPGRARGGSSRSGRTRWQGRHGDQLTLVAACR
DELTVIRAKKGIRYEGDLEPLITEAEDLSQPLGEVWTDGLQAYRWMEYDHRTVIHKEQYISPDGVHINQVECLWSLLHPWLRKFRGLSKHGLEQAAHTFG
CVWSLNNIGASLFALIDCFTPGRFRSFA
DTLLSINQIAIVLDRAYNTIHTAIRDLEAALERGFPVVWNRLKQPYSGPLQVDESGKVCSGYKGQDPPRPGRARGGSSRSGRTRWQGRHGDQLTLVAACR
DELTVIRAKKGIRYEGDLEPLITEAEDLSQPLGEVWTDGLQAYRWMEYDHRTVIHKEQYISPDGVHINQVECLWSLLHPWLRKFRGLSKHGLEQAAHTFG
CVWSLNNIGASLFALIDCFTPGRFRSFA
Blast result :
Comments
ISNje2 is 82% aa similar to ISHla12.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.