ISNje2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOIA01000057 ND Natronococcus jeotgali
Natronococcus jeotgali DSM 18795
DNA section
IS Length : 1038 bp

Ends


IR Length : 24

IRL : CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATCCCGCCGACGTATGG
IRR : CGCTCTTACGCAAAGCTACGGAAACGACCGGGGGTGAAGCAATCGATGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GAGACGATTCGCACAGGTTAACCAACAC8

DNA sequence

CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATCCCGCCGACGTATGGCGGATATGTCTCACACCCAGCCAGCCTTCGGCGGGATGCTTCGGAACTTA
ATCGATGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGTCTCAAACATCTCTGGGAGCATACACCGTGTCCTCAATGCG
GAAATCGGTCGATCAGAACGTGGGAGAACGTTGATCGTGTCTGGTGCCGGAGCTGCCAGTTCAAACCCGCCTACACCTACGGCACACCCTTCAGTGAGAA
GGACCTCACCTGCGGGGAGGTCCTTCTCGCGTTCATTCTCTACGCTGATACGCTACTCAGCATCAATCAAATCGCGATTGTGCTTGATCGCGCGTACAAC
ACGATTCACACCGCTATCCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCGGTTGTCTGGAACCGACTCAAACAGCCATACAGCGGCCCGTTACAGG
TCGACGAGAGTGGAAAAGTGTGCTCGGGATACAAAGGTCAAGACCCGCCGCGGCCCGGACGGGCTCGCGGCGGGTCGTCTCGGAGTGGGCGAACACGATG
GCAAGGACGTCACGGCGACCAATTGACGCTCGTCGCGGCCTGCCGCGACGAGCTCACTGTCATTCGTGCAAAGAAAGGAATCCGCTACGAGGGTGATCTT
GAGCCGCTGATTACGGAGGCTGAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACCGATGGACTGCAGGCATATCGGTGGATGGAATACGATCACCGGA
CGGTCATCCACAAAGAGCAGTACATTTCGCCGGACGGCGTCCATATTAACCAGGTTGAGTGTCTCTGGTCACTCTTGCATCCGTGGCTGCGGAAGTTTCG
CGGCCTGTCCAAGCACGGCTTGGAACAGGCCGCTCACACCTTTGGCTGCGTCTGGTCATTGAACAACATCGGCGCGTCGCTCTTCGCACTCATCGATTGC
TTCACCCCCGGTCGTTTCCGTAGCTTTGCGTAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
987 bp328 aa471033+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MADMSHTQPAFGGMLRNLIDDGILELRTEPLDALVERRLKHLWEHTPCPQCGNRSIRTWENVDRVWCRSCQFKPAYTYGTPFSEKDLTCGEVLLAFILYA
DTLLSINQIAIVLDRAYNTIHTAIRDLEAALERGFPVVWNRLKQPYSGPLQVDESGKVCSGYKGQDPPRPGRARGGSSRSGRTRWQGRHGDQLTLVAACR
DELTVIRAKKGIRYEGDLEPLITEAEDLSQPLGEVWTDGLQAYRWMEYDHRTVIHKEQYISPDGVHINQVECLWSLLHPWLRKFRGLSKHGLEQAAHTFG
CVWSLNNIGASLFALIDCFTPGRFRSFA

 

Blast result :
Comments
ISNje2 is 82% aa similar to ISHla12.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.