ISHsi3

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLR01000080 ND Haloarcula sinaiiensis
Haloarcula sinaiiensis ATCC 33800
DNA section
IS Length : 1046 bp

Ends


IR Length : 26/33

IRL : CGCTCTTATGCAAAGCTGCGGAAAGACCGTATATTTACACTGAACCGACG
IRR : CGCTCTTATGTAGAATTGCGGAAAGCCCCGATAACGAGACAATCAACGAT

Insertion site


Left flankDirect repeatRight flankDR Length
ACGACAGAGATACTGGAATACTCGTATC8

DNA sequence

CGCTCTTATGCAAAGCTGCGGAAAGACCGTATATTTACACTGAACCGACGCTAATTTGGCGATATGGCTTCTGCTCAGCCAGCGTTCGGCGGGATGTTTC
GGCAGCTGATTGAGCTGGGCGTCGTCGAAATCAACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGGCTCAAGGAATTTTGGGAGAATACGTCTTGTCC
ACGGTGCGGTCACCAGAGCATCGTCACGTGGGACGAAATCGACCGAATCTGGTGCCGTAACTGTAATTTTAAGCCAGTTTTCACCTACGGAACACCGTTC
CACGAGAAGCACCTCTCCTGCGGTGAGGTGCTTCTCACGTTCACGCTCTACGCGGACACATTGCTGAGTATCAACCAGATCGCACCGTTTCTCGGTCGAG
CCTATAGAACCGTCTATACAGCCATTCGAGACGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTCTGGAGACTCCTCGACCAGACTATCGATGGACC
AACACAAGTTGACGAATCTGGCAGAGTCTGTTCGGGCTACAAAGGCCAAGAGCCGCCTCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAAACAGGCCGC
TCACGCTGGCGAGGGCGTCACGGTGATCAACTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGCGTGATTCGTGGTCAACTCGGCATCGATTACAGTG
GAGATCTCGAACCAGTAATCCAGGAGTCTGAAGACCTCTCCCAGGCGCTGGGAGAGGTCTGGACCGACGGACTCCAAGCCTACCGAGAGATGGAGCGTGA
CCACCGAACGGTCGTCCATAAAGAGAGATATGTTTCGCCCGACGGCGTTCATATTAACCAAGCTGAGTGCCTGTTTTCGCTCGTCCAGCCGTGGCTGCGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACTTTCGGCATCGTTCGCTCACTCACCCTAGCTGGTGAATCCGCCGAGTCAATCG
TTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa641041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASAQPAFGGMFRQLIELGVVEINTEPLDARIERRLKEFWENTSCPRCGHQSIVTWDEIDRIWCRNCNFKPVFTYGTPFHEKHLSCGEVLLTFTLYADTL
LSINQIAPFLGRAYRTVYTAIRDVEAAVQRGFPVVWRLLDQTIDGPTQVDESGRVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRHGDQLTLVAACRDSL
RVIRGQLGIDYSGDLEPVIQESEDLSQALGEVWTDGLQAYREMERDHRTVVHKERYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLTLAGESAESIVDCLVIGAFRNST

 

Blast result :
Comments
ISHsi3 is 85% aa similar to ISHli6.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.