ISHsi3
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLR01000080 | ND | Haloarcula sinaiiensis | Haloarcula sinaiiensis ATCC 33800 |
DNA section
IS Length : 1046 bp
Ends
IR Length : 26/33
IRL : CGCTCTTATGCAAAGCTGCGGAAAGACCGTATATTTACACTGAACCGACG
IRR : CGCTCTTATGTAGAATTGCGGAAAGCCCCGATAACGAGACAATCAACGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGACAGAGA | TACTGGAA | TACTCGTATC | 8 |
DNA sequence
CGCTCTTATGCAAAGCTGCGGAAAGACCGTATATTTACACTGAACCGACGCTAATTTGGCGATATGGCTTCTGCTCAGCCAGCGTTCGGCGGGATGTTTC
GGCAGCTGATTGAGCTGGGCGTCGTCGAAATCAACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGGCTCAAGGAATTTTGGGAGAATACGTCTTGTCC
ACGGTGCGGTCACCAGAGCATCGTCACGTGGGACGAAATCGACCGAATCTGGTGCCGTAACTGTAATTTTAAGCCAGTTTTCACCTACGGAACACCGTTC
CACGAGAAGCACCTCTCCTGCGGTGAGGTGCTTCTCACGTTCACGCTCTACGCGGACACATTGCTGAGTATCAACCAGATCGCACCGTTTCTCGGTCGAG
CCTATAGAACCGTCTATACAGCCATTCGAGACGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTCTGGAGACTCCTCGACCAGACTATCGATGGACC
AACACAAGTTGACGAATCTGGCAGAGTCTGTTCGGGCTACAAAGGCCAAGAGCCGCCTCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAAACAGGCCGC
TCACGCTGGCGAGGGCGTCACGGTGATCAACTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGCGTGATTCGTGGTCAACTCGGCATCGATTACAGTG
GAGATCTCGAACCAGTAATCCAGGAGTCTGAAGACCTCTCCCAGGCGCTGGGAGAGGTCTGGACCGACGGACTCCAAGCCTACCGAGAGATGGAGCGTGA
CCACCGAACGGTCGTCCATAAAGAGAGATATGTTTCGCCCGACGGCGTTCATATTAACCAAGCTGAGTGCCTGTTTTCGCTCGTCCAGCCGTGGCTGCGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACTTTCGGCATCGTTCGCTCACTCACCCTAGCTGGTGAATCCGCCGAGTCAATCG
TTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTACATAAGAGCG
GGCAGCTGATTGAGCTGGGCGTCGTCGAAATCAACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGGCTCAAGGAATTTTGGGAGAATACGTCTTGTCC
ACGGTGCGGTCACCAGAGCATCGTCACGTGGGACGAAATCGACCGAATCTGGTGCCGTAACTGTAATTTTAAGCCAGTTTTCACCTACGGAACACCGTTC
CACGAGAAGCACCTCTCCTGCGGTGAGGTGCTTCTCACGTTCACGCTCTACGCGGACACATTGCTGAGTATCAACCAGATCGCACCGTTTCTCGGTCGAG
CCTATAGAACCGTCTATACAGCCATTCGAGACGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTCTGGAGACTCCTCGACCAGACTATCGATGGACC
AACACAAGTTGACGAATCTGGCAGAGTCTGTTCGGGCTACAAAGGCCAAGAGCCGCCTCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAAACAGGCCGC
TCACGCTGGCGAGGGCGTCACGGTGATCAACTGACGCTCGTCGCGGCGTGCCGCGACTCGCTTCGCGTGATTCGTGGTCAACTCGGCATCGATTACAGTG
GAGATCTCGAACCAGTAATCCAGGAGTCTGAAGACCTCTCCCAGGCGCTGGGAGAGGTCTGGACCGACGGACTCCAAGCCTACCGAGAGATGGAGCGTGA
CCACCGAACGGTCGTCCATAAAGAGAGATATGTTTCGCCCGACGGCGTTCATATTAACCAAGCTGAGTGCCTGTTTTCGCTCGTCCAGCCGTGGCTGCGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACTTTCGGCATCGTTCGCTCACTCACCCTAGCTGGTGAATCCGCCGAGTCAATCG
TTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 64 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MASAQPAFGGMFRQLIELGVVEINTEPLDARIERRLKEFWENTSCPRCGHQSIVTWDEIDRIWCRNCNFKPVFTYGTPFHEKHLSCGEVLLTFTLYADTL
LSINQIAPFLGRAYRTVYTAIRDVEAAVQRGFPVVWRLLDQTIDGPTQVDESGRVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRHGDQLTLVAACRDSL
RVIRGQLGIDYSGDLEPVIQESEDLSQALGEVWTDGLQAYREMERDHRTVVHKERYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLTLAGESAESIVDCLVIGAFRNST
LSINQIAPFLGRAYRTVYTAIRDVEAAVQRGFPVVWRLLDQTIDGPTQVDESGRVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRHGDQLTLVAACRDSL
RVIRGQLGIDYSGDLEPVIQESEDLSQALGEVWTDGLQAYREMERDHRTVVHKERYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLTLAGESAESIVDCLVIGAFRNST
Blast result :
Comments
ISHsi3 is 85% aa similar to ISHli6.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.