ISHara2
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNFC01000023 | ND | Halovenus aranensis | Halovenus aranensis IBRC-M10015 |
DNA section
IS Length : 1209 bp
Ends
IR Length : 23/27
IRL : CGCTCTTATGTAAAACTGCGGAATGGCGATAATCGCTGCTGAGCGCAATC
IRR : CGCTCTTATGTAGAATTGCGGAAAGCCCCGATAACGAGACAATCAACGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGCTGTTGGTTAAAATGGT | GTCTGTGTTAACCAACGTAG | 0 |
DNA sequence
CGCTCTTATGTAAAACTGCGGAATGGCGATAATCGCTGCTGAGCGCAATCAGCTTGTAATCCTTTGAGAAAGGCGATACCGACAGAATCTATCTTATGCA
GAAAAATACGTTTACAGCGACTCTGCTACGTCTTTTTACAGTTCTACACAAGAGCATCGTGTGTCGCTCTTATGCAAAGCTGCGGAAAGACGTATTATTA
CACTGAGCCGGCGCTAATCTGGCAATATGTCTTCTCCTCAGCCAGCGTTCGGAGCGATGTTTCGAGAGCTGATCGAGTTGGGCGTTGTCGAGATTAACAC
GGAGTCGCTCGACGCGGCCGTCGAGCGGCGACTCAAGGAATTCTGGGAGAATACATCCTGTCCACGCTGCGGCCACCAGAGCGTCGTGACCTGGGAAAGT
ACCGACCGAATCTGGTGCCGTGACTGCAATTTCAAGCCGGTTTTCACCTACGGAACGCCGTTCCACGAGAAGCACCTCCCCGCAGGCGAGGTGCTTCTCG
CGTTCACGCTCTATGCGGACACGTTGCTTAGTATCAACCAAATCGCGCCGTTCCTCGGTCGCGCCTATAGAACCGTTCACGCGGCGATTCGAGACGTGGA
AGCCGCGGTTCATCGCGGCTTCCCCGTCGTCTGGAGCCTTCTCGACCAGACCATCGATGGACCAGCGCAAGTCGACGAATCTGGCAAAGTCTGCTCGGGC
TACAAAGGCCAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAGACAGGTCGCTCACGCTGGCGAGGGCGTCACGGTGATCAGTTGACAC
TCGTCGCGGCCTGCCGCGACTCTCTTCGCGTGATTAGCGGCCAACTCGGGATCGACTACAGCGGCGATCTTGAACCAGTGATACAGGAGGCTGAAGACCT
CTCCCAGCCGCTGGGAGAGGTCTGGACCGACGGACTCCAGGCGTACCGACAGATGGGTTTTGACCACCGAACGGTCGTCCACAAAGAGAGATATGTTTCG
CCCGAGGGCGTCCACATTAACCAGGCTGAGTGTCTGTTTTCGCTCGTCCAGCCGTGGCTGCGGAAGTTTCGCGGCCTGTCCAAGCAGGGCTTGGAACAGG
CCGCTCACACATTCGGTATCGTTCGTTCGCTCAATTTAGCGGATGAATCCACCGAGTCAATCGTTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTAC
ATAAGAGCG
GAAAAATACGTTTACAGCGACTCTGCTACGTCTTTTTACAGTTCTACACAAGAGCATCGTGTGTCGCTCTTATGCAAAGCTGCGGAAAGACGTATTATTA
CACTGAGCCGGCGCTAATCTGGCAATATGTCTTCTCCTCAGCCAGCGTTCGGAGCGATGTTTCGAGAGCTGATCGAGTTGGGCGTTGTCGAGATTAACAC
GGAGTCGCTCGACGCGGCCGTCGAGCGGCGACTCAAGGAATTCTGGGAGAATACATCCTGTCCACGCTGCGGCCACCAGAGCGTCGTGACCTGGGAAAGT
ACCGACCGAATCTGGTGCCGTGACTGCAATTTCAAGCCGGTTTTCACCTACGGAACGCCGTTCCACGAGAAGCACCTCCCCGCAGGCGAGGTGCTTCTCG
CGTTCACGCTCTATGCGGACACGTTGCTTAGTATCAACCAAATCGCGCCGTTCCTCGGTCGCGCCTATAGAACCGTTCACGCGGCGATTCGAGACGTGGA
AGCCGCGGTTCATCGCGGCTTCCCCGTCGTCTGGAGCCTTCTCGACCAGACCATCGATGGACCAGCGCAAGTCGACGAATCTGGCAAAGTCTGCTCGGGC
TACAAAGGCCAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAGACAGGTCGCTCACGCTGGCGAGGGCGTCACGGTGATCAGTTGACAC
TCGTCGCGGCCTGCCGCGACTCTCTTCGCGTGATTAGCGGCCAACTCGGGATCGACTACAGCGGCGATCTTGAACCAGTGATACAGGAGGCTGAAGACCT
CTCCCAGCCGCTGGGAGAGGTCTGGACCGACGGACTCCAGGCGTACCGACAGATGGGTTTTGACCACCGAACGGTCGTCCACAAAGAGAGATATGTTTCG
CCCGAGGGCGTCCACATTAACCAGGCTGAGTGTCTGTTTTCGCTCGTCCAGCCGTGGCTGCGGAAGTTTCGCGGCCTGTCCAAGCAGGGCTTGGAACAGG
CCGCTCACACATTCGGTATCGTTCGTTCGCTCAATTTAGCGGATGAATCCACCGAGTCAATCGTTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTAC
ATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 227 | 1204 | + | No |
Chemistry : DDE
ORF sequence :
MSSPQPAFGAMFRELIELGVVEINTESLDAAVERRLKEFWENTSCPRCGHQSVVTWESTDRIWCRDCNFKPVFTYGTPFHEKHLPAGEVLLAFTLYADTL
LSINQIAPFLGRAYRTVHAAIRDVEAAVHRGFPVVWSLLDQTIDGPAQVDESGKVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRHGDQLTLVAACRDSL
RVISGQLGIDYSGDLEPVIQEAEDLSQPLGEVWTDGLQAYRQMGFDHRTVVHKERYVSPEGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLNLADESTESIVDCLVIGAFRNST
LSINQIAPFLGRAYRTVHAAIRDVEAAVHRGFPVVWSLLDQTIDGPAQVDESGKVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRHGDQLTLVAACRDSL
RVISGQLGIDYSGDLEPVIQEAEDLSQPLGEVWTDGLQAYRQMGFDHRTVVHKERYVSPEGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLNLADESTESIVDCLVIGAFRNST
Blast result :
Comments
ISHara2 is 85% aa similar to ISHli6.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.