ISHara2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNFC01000023 ND Halovenus aranensis
Halovenus aranensis IBRC-M10015
DNA section
IS Length : 1209 bp

Ends


IR Length : 23/27

IRL : CGCTCTTATGTAAAACTGCGGAATGGCGATAATCGCTGCTGAGCGCAATC
IRR : CGCTCTTATGTAGAATTGCGGAAAGCCCCGATAACGAGACAATCAACGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGCTGTTGGTTAAAATGGTGTCTGTGTTAACCAACGTAG0

DNA sequence

CGCTCTTATGTAAAACTGCGGAATGGCGATAATCGCTGCTGAGCGCAATCAGCTTGTAATCCTTTGAGAAAGGCGATACCGACAGAATCTATCTTATGCA
GAAAAATACGTTTACAGCGACTCTGCTACGTCTTTTTACAGTTCTACACAAGAGCATCGTGTGTCGCTCTTATGCAAAGCTGCGGAAAGACGTATTATTA
CACTGAGCCGGCGCTAATCTGGCAATATGTCTTCTCCTCAGCCAGCGTTCGGAGCGATGTTTCGAGAGCTGATCGAGTTGGGCGTTGTCGAGATTAACAC
GGAGTCGCTCGACGCGGCCGTCGAGCGGCGACTCAAGGAATTCTGGGAGAATACATCCTGTCCACGCTGCGGCCACCAGAGCGTCGTGACCTGGGAAAGT
ACCGACCGAATCTGGTGCCGTGACTGCAATTTCAAGCCGGTTTTCACCTACGGAACGCCGTTCCACGAGAAGCACCTCCCCGCAGGCGAGGTGCTTCTCG
CGTTCACGCTCTATGCGGACACGTTGCTTAGTATCAACCAAATCGCGCCGTTCCTCGGTCGCGCCTATAGAACCGTTCACGCGGCGATTCGAGACGTGGA
AGCCGCGGTTCATCGCGGCTTCCCCGTCGTCTGGAGCCTTCTCGACCAGACCATCGATGGACCAGCGCAAGTCGACGAATCTGGCAAAGTCTGCTCGGGC
TACAAAGGCCAAGAGCCGCCGCGGAACAGCCGTTCTCGCGGCGGCTCGTCCCAGACAGGTCGCTCACGCTGGCGAGGGCGTCACGGTGATCAGTTGACAC
TCGTCGCGGCCTGCCGCGACTCTCTTCGCGTGATTAGCGGCCAACTCGGGATCGACTACAGCGGCGATCTTGAACCAGTGATACAGGAGGCTGAAGACCT
CTCCCAGCCGCTGGGAGAGGTCTGGACCGACGGACTCCAGGCGTACCGACAGATGGGTTTTGACCACCGAACGGTCGTCCACAAAGAGAGATATGTTTCG
CCCGAGGGCGTCCACATTAACCAGGCTGAGTGTCTGTTTTCGCTCGTCCAGCCGTGGCTGCGGAAGTTTCGCGGCCTGTCCAAGCAGGGCTTGGAACAGG
CCGCTCACACATTCGGTATCGTTCGTTCGCTCAATTTAGCGGATGAATCCACCGAGTCAATCGTTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTAC
ATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa2271204+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSPQPAFGAMFRELIELGVVEINTESLDAAVERRLKEFWENTSCPRCGHQSVVTWESTDRIWCRDCNFKPVFTYGTPFHEKHLPAGEVLLAFTLYADTL
LSINQIAPFLGRAYRTVHAAIRDVEAAVHRGFPVVWSLLDQTIDGPAQVDESGKVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRHGDQLTLVAACRDSL
RVISGQLGIDYSGDLEPVIQEAEDLSQPLGEVWTDGLQAYRQMGFDHRTVVHKERYVSPEGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVR
SLNLADESTESIVDCLVIGAFRNST

 

Blast result :
Comments
ISHara2 is 85% aa similar to ISHli6.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.