ISHrub1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOTC01000006 ND Halogranum rubrum
Halogranum rubrum CGMCC 1.7738
DNA section
IS Length : 1038 bp

Ends


IR Length : 24

IRL : CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTCTAG
IRR : CGCTCTTACGCAAAGCTACGGAAACGATGGAGGGCGAAGCAATCGATGAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTAGGTTATAGCTGGTACTCGGCGTC8

DNA sequence

CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTCTAGCGGATATGTCTAAAACCCAGCCAGCCTTCGGCGGAATGCTTCGAAACCTA
ATCGACGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGTCTCAAGCAACTCTGGGAGCACACACCGTGCCCTCGCTGCG
GAAATCGGACGATCAGAACGTGGGCGCACTCCGATCGTGTCTGGTGTCGCAGCTGCCAGTTCAAACCCGCCTATACCTACGGCACACCCTTCAGCGAGAA
GGACCTCCCCGCAGGCGAGGTCCTTCTCGCGTTCATCCTCTACGCAGACACCTTGCTCAGCATCAATCAAATCGCGATTGTGCTTGACCGCGCGTACAAC
ACGATTCACACAGCAATTCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCGATTGTCTGGAACCGTCTCAAACGACCGCACAGCGGCCCGTTACAAA
TTGACGAGAGTGGCAAAGTCTGTTCAGGATACAAGGGCCAAGACCCGCCGCGGCCCGGACGGGCTCGCGGCGGGTCGTCTCGAACTGGACGCACTCGATG
GCAAGGACGTCACGGTGATCAACTGACGCTCGTCGCGGCCTGCCGCGACGAGCTCACTGTCATTCGCGCGAAGAAAGGAATCCGCTACGAGGGTGATCTT
GGACCGGTAATTGAGGAGGCTGAAGACCTCTCCCAGCCACTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTATCGCTGGATGGAGTACGACCACCGGA
CGGTCGTTCACAAGGAGCGGTACGTTTCGCCGGACGGCGTCCACATCAACCAGGTTGAGTGCTTGTGGTCACTCTTGCATCCGTGGCTGCGGAAGTTCCG
CGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGCTGCGTTCGATCCTTGAACAGGATCGGCGCGTCGCTGTTCGCACTCATCGATTGC
TTCGCCCTCCATCGTTTCCGTAGCTTTGCGTAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa561033+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKTQPAFGGMLRNLIDDGILELRTEPLDALVERRLKQLWEHTPCPRCGNRTIRTWAHSDRVWCRSCQFKPAYTYGTPFSEKDLPAGEVLLAFILYADTL
LSINQIAIVLDRAYNTIHTAIRDLEAALERGFPIVWNRLKRPHSGPLQIDESGKVCSGYKGQDPPRPGRARGGSSRTGRTRWQGRHGDQLTLVAACRDEL
TVIRAKKGIRYEGDLGPVIEEAEDLSQPLGEVWTDGLQAYRWMEYDHRTVVHKERYVSPDGVHINQVECLWSLLHPWLRKFRGLSKQGLEQAAHTFGCVR
SLNRIGASLFALIDCFALHRFRSFA

 

Blast result :
Comments
ISHrub1 is 83% aa similar to ISHla12.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.