ISHrub1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FOTC01000006 | ND | Halogranum rubrum | Halogranum rubrum CGMCC 1.7738 |
DNA section
IS Length : 1038 bp
Ends
IR Length : 24
IRL : CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTCTAG
IRR : CGCTCTTACGCAAAGCTACGGAAACGATGGAGGGCGAAGCAATCGATGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTAGGTTA | TAGCTGGT | ACTCGGCGTC | 8 |
DNA sequence
CGCTCTTACGCAAAGCTACGGAAAAGTCAGTGCATTCCGCCGACGTCTAGCGGATATGTCTAAAACCCAGCCAGCCTTCGGCGGAATGCTTCGAAACCTA
ATCGACGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGTCTCAAGCAACTCTGGGAGCACACACCGTGCCCTCGCTGCG
GAAATCGGACGATCAGAACGTGGGCGCACTCCGATCGTGTCTGGTGTCGCAGCTGCCAGTTCAAACCCGCCTATACCTACGGCACACCCTTCAGCGAGAA
GGACCTCCCCGCAGGCGAGGTCCTTCTCGCGTTCATCCTCTACGCAGACACCTTGCTCAGCATCAATCAAATCGCGATTGTGCTTGACCGCGCGTACAAC
ACGATTCACACAGCAATTCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCGATTGTCTGGAACCGTCTCAAACGACCGCACAGCGGCCCGTTACAAA
TTGACGAGAGTGGCAAAGTCTGTTCAGGATACAAGGGCCAAGACCCGCCGCGGCCCGGACGGGCTCGCGGCGGGTCGTCTCGAACTGGACGCACTCGATG
GCAAGGACGTCACGGTGATCAACTGACGCTCGTCGCGGCCTGCCGCGACGAGCTCACTGTCATTCGCGCGAAGAAAGGAATCCGCTACGAGGGTGATCTT
GGACCGGTAATTGAGGAGGCTGAAGACCTCTCCCAGCCACTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTATCGCTGGATGGAGTACGACCACCGGA
CGGTCGTTCACAAGGAGCGGTACGTTTCGCCGGACGGCGTCCACATCAACCAGGTTGAGTGCTTGTGGTCACTCTTGCATCCGTGGCTGCGGAAGTTCCG
CGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGCTGCGTTCGATCCTTGAACAGGATCGGCGCGTCGCTGTTCGCACTCATCGATTGC
TTCGCCCTCCATCGTTTCCGTAGCTTTGCGTAAGAGCG
ATCGACGACGGTATCTTAGAGCTTCGGACCGAGCCGCTCGACGCCCTCGTCGAGCGGCGTCTCAAGCAACTCTGGGAGCACACACCGTGCCCTCGCTGCG
GAAATCGGACGATCAGAACGTGGGCGCACTCCGATCGTGTCTGGTGTCGCAGCTGCCAGTTCAAACCCGCCTATACCTACGGCACACCCTTCAGCGAGAA
GGACCTCCCCGCAGGCGAGGTCCTTCTCGCGTTCATCCTCTACGCAGACACCTTGCTCAGCATCAATCAAATCGCGATTGTGCTTGACCGCGCGTACAAC
ACGATTCACACAGCAATTCGTGACCTGGAAGCCGCGCTCGAGCGCGGCTTCCCGATTGTCTGGAACCGTCTCAAACGACCGCACAGCGGCCCGTTACAAA
TTGACGAGAGTGGCAAAGTCTGTTCAGGATACAAGGGCCAAGACCCGCCGCGGCCCGGACGGGCTCGCGGCGGGTCGTCTCGAACTGGACGCACTCGATG
GCAAGGACGTCACGGTGATCAACTGACGCTCGTCGCGGCCTGCCGCGACGAGCTCACTGTCATTCGCGCGAAGAAAGGAATCCGCTACGAGGGTGATCTT
GGACCGGTAATTGAGGAGGCTGAAGACCTCTCCCAGCCACTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTATCGCTGGATGGAGTACGACCACCGGA
CGGTCGTTCACAAGGAGCGGTACGTTTCGCCGGACGGCGTCCACATCAACCAGGTTGAGTGCTTGTGGTCACTCTTGCATCCGTGGCTGCGGAAGTTCCG
CGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGCTGCGTTCGATCCTTGAACAGGATCGGCGCGTCGCTGTTCGCACTCATCGATTGC
TTCGCCCTCCATCGTTTCCGTAGCTTTGCGTAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 56 | 1033 | + | No |
Chemistry : DDE
ORF sequence :
MSKTQPAFGGMLRNLIDDGILELRTEPLDALVERRLKQLWEHTPCPRCGNRTIRTWAHSDRVWCRSCQFKPAYTYGTPFSEKDLPAGEVLLAFILYADTL
LSINQIAIVLDRAYNTIHTAIRDLEAALERGFPIVWNRLKRPHSGPLQIDESGKVCSGYKGQDPPRPGRARGGSSRTGRTRWQGRHGDQLTLVAACRDEL
TVIRAKKGIRYEGDLGPVIEEAEDLSQPLGEVWTDGLQAYRWMEYDHRTVVHKERYVSPDGVHINQVECLWSLLHPWLRKFRGLSKQGLEQAAHTFGCVR
SLNRIGASLFALIDCFALHRFRSFA
LSINQIAIVLDRAYNTIHTAIRDLEAALERGFPIVWNRLKRPHSGPLQIDESGKVCSGYKGQDPPRPGRARGGSSRTGRTRWQGRHGDQLTLVAACRDEL
TVIRAKKGIRYEGDLGPVIEEAEDLSQPLGEVWTDGLQAYRWMEYDHRTVVHKERYVSPDGVHINQVECLWSLLHPWLRKFRGLSKQGLEQAAHTFGCVR
SLNRIGASLFALIDCFALHRFRSFA
Blast result :
Comments
ISHrub1 is 83% aa similar to ISHla12.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.