ISfinder Mirror Site

ISHth4

Family IS1595
Group ISH4

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
AOMF01000186	ND	Halococcus thailandensis	Halococcus thailandensis JCM 13552

DNA section

IS Length : 1046 bp

Ends

IR Length : 24/25

IRL : CGCTCTTGCCGAGTCTAGTGAAACAGTCGCGTAGGAACTACAGCATCCCG
IRR : CGCTCTTGCCGAATCTAGTGAAACACGTTGAGGGCGAAGCAGTCAATAAG

Insertion site

Left flank	Direct repeat	Right flank	DR Length
CCCCTAGTTATCCCAT		TTGAGGTTTGCATGAGGC	0

DNA sequence

CGCTCTTGCCGAGTCTAGTGAAACAGTCGCGTAGGAACTACAGCATCCCGCCGTATGCTAGTGGGTATGTTCCAGCAGACAGCTTTCGGCGGGATGCTAC
AGGACGTTGTTGAGCGGCAAGCAATAGTGTTCCGCCCCGAGCCGCTCGACACCATCGTCGAGCGGCGCTGCAAGCACGCGTGGGAACAAGCTCCCTGTCC
CGAGTGTTGTGAAACAGCCCTCCAGACTCGGGACGACAGTCCCCGAGTCTGGTGCCACAACTGCCGCTACGGCTTCACATACACCCGAAATACGCCGTTT
GCAAACAGCGGTCTCACTCCCGGTGAACTCCTGCTCGTCTTCATCCTCTACGCCGATACCTTGCTCAGCATCAACCAGATCGCCCAGCTGTTCGATCCTT
GCTACGACACAGTTCACACCCAACTCCGCGAGGGGGAAGCCGCATTCGAGCGCGGCTTCCCCCTCGTCTGGGAGCGTATCCAACACACCGTCGAGGGACC
AACACAGATCGATGAAACTGGCTCGAAGTGCTCCGGCTACAAGGGACAATCGCCGCCGCGGGACGGCCTCTCCCGCGGCGGTTCTGGCGACCCTGGCCGA
TCACGCTGGGAAGGTGCTCCCGGCGACAAACTGACGCTCGTTGCGGCGTGCCGCGACGTGCTGCGCGTGGTTTCGGCAGAAGAAGGTTCTGCGTACGACG
AAAATCTCGGACCAGTAATCGAGGAAGCAGGCGATCTCTCCCAGCCGCTGGGAGAGATCTGGACCGACGAGTTACCCGCCTATCAGCAGATGGACTACGA
GCACCGAACCGTCGTTCACGACGATGAGTACGTCTCAGACGAGGGTATCCACACGAATCAGGTCGAATGCCTTTGGTCCCTCATCGAACCGTGGCTGGAG
AAGTTCCGTGGACTCTCTAAACCCGGATTAGAGCAGTCCGTTCGAACCTACGGGTTCGTACGGTCATTGAACCTCGTCGGAGCACCGCTACACGGCCTTA
TTGACTGCTTCGCCCTCAACGTGTTTCACTAGATTCGGCAAGAGCG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
981 bp	325 aa	52	1032	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVGMFQQTAFGGMLQDVVERQAIVFRPEPLDTIVERRCKHAWEQAPCPECCETALQTRDDSPRVWCHNCRYGFTYTRNTPFANSGLTPGELLLVFILYA
DTLLSINQIAQLFDPCYDTVHTQLREGEAAFERGFPLVWERIQHTVEGPTQIDETGSKCSGYKGQSPPRDGLSRGGSGDPGRSRWEGAPGDKLTLVAACR
DVLRVVSAEEGSAYDENLGPVIEEAGDLSQPLGEIWTDELPAYQQMDYEHRTVVHDDEYVSDEGIHTNQVECLWSLIEPWLEKFRGLSKPGLEQSVRTYG
FVRSLNLVGAPLHGLIDCFALNVFH

Blast result :

Comments

ISHth4 is 77% aa similar to ISHara1.

References

1] ISfinder annotation (2016).
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.