ISDth3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ACJN02000002 | ND | Desulfonatronospira thiodismutans | Desulfonatronospira thiodismutans ASO3-1 |
DNA section
IS Length : 999 bp
Ends
IR Length : 26
IRL : TAGGGGTATGCACTTGACTCCGGTTCCTGCTGACGCTTAATATTCCTCCC
IRR : TAGGGGTATGCACTTGACTCCGGTTCATTTCTCAACTTCTTGTTTTTTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TATGCTAAAAA | AAATGCAA | TTTTAAAATT | 8 |
DNA sequence
TAGGGGTATGCACTTGACTCCGGTTCCTGCTGACGCTTAATATTCCTCCCCATGGAGGACTACCCGACAACTATTCTTGAACTGGAAGATCGGTTCAGCT
TTGAAAAAGATTGCCGTGAGTACCTTTTTAAACTTCGCTGGCCCGAGGGGTTCCGGTGTTCGCGGTGCAGCCATGAACAATATTGGCAGAGAACCAACGG
CCTCTTTGAATGCAAAGGATGCGGGTTTCAGGTTTCTGTAACTGCCGGTACGATTTTTCAAGACACCAAGAAGCCTCTTCGTCTCTGGTTTAGAGCTGTT
TGGCACGTGACCAGTCAGAAGTATGGGGCCAATGCGTTGGGTCTTCAACGTGTCCTCGGACTTGGGAGCTATCGTACTGCTTGGTCTTGGTTGCATAAAC
TTCGTCGAGCAATGGTTAGACCTGGAAGGGATAAGCTATCCGGAATCGTCCAGGTCGATGAAAGCATGTTTGGTGGCAAAAGGCCTGGCAAAAGAGGCCG
TGGAGCCAGTGGAAAGGCTTTGGTATGCATAGTTGCACAAGTTGATGGTCAGCGGATTGGCAGGATCAGGCTTCAAGTTATCCCAGATGCTTCTGCTGAG
AGCCTGGAAGCTGCAATTATGAATACCATTGAGCCAGGAACCGTTGTTCAAACTGATGGCTGGCGAGGATACAACCAACTTCAAAAAAAGGGCTATGCTC
ATGAAATCGTTCGCAGTGATTACGTTATTGGCGATGATCTGCTGCCCTTTTGTCATCGCGTAGCAAGTCTTCTAAAAAGATGGCTTACAGGGACACATCA
AGGTTCGGTAAGCCACAAACACCTTGGTTATTACTTGGACGAGTTTACATTCCGTTTTAATCGAAGGACTTCTCGATCACGAGGAAAACTCTTCTATAGG
TTAATACAACAGGCTCTGATGATTGATCCGGTCACAAACAAATCTTTGGTTAAAAAACAAGAAGTTGAGAAATGAACCGGAGTCAAGTGCATACCCCTA
TTGAAAAAGATTGCCGTGAGTACCTTTTTAAACTTCGCTGGCCCGAGGGGTTCCGGTGTTCGCGGTGCAGCCATGAACAATATTGGCAGAGAACCAACGG
CCTCTTTGAATGCAAAGGATGCGGGTTTCAGGTTTCTGTAACTGCCGGTACGATTTTTCAAGACACCAAGAAGCCTCTTCGTCTCTGGTTTAGAGCTGTT
TGGCACGTGACCAGTCAGAAGTATGGGGCCAATGCGTTGGGTCTTCAACGTGTCCTCGGACTTGGGAGCTATCGTACTGCTTGGTCTTGGTTGCATAAAC
TTCGTCGAGCAATGGTTAGACCTGGAAGGGATAAGCTATCCGGAATCGTCCAGGTCGATGAAAGCATGTTTGGTGGCAAAAGGCCTGGCAAAAGAGGCCG
TGGAGCCAGTGGAAAGGCTTTGGTATGCATAGTTGCACAAGTTGATGGTCAGCGGATTGGCAGGATCAGGCTTCAAGTTATCCCAGATGCTTCTGCTGAG
AGCCTGGAAGCTGCAATTATGAATACCATTGAGCCAGGAACCGTTGTTCAAACTGATGGCTGGCGAGGATACAACCAACTTCAAAAAAAGGGCTATGCTC
ATGAAATCGTTCGCAGTGATTACGTTATTGGCGATGATCTGCTGCCCTTTTGTCATCGCGTAGCAAGTCTTCTAAAAAGATGGCTTACAGGGACACATCA
AGGTTCGGTAAGCCACAAACACCTTGGTTATTACTTGGACGAGTTTACATTCCGTTTTAATCGAAGGACTTCTCGATCACGAGGAAAACTCTTCTATAGG
TTAATACAACAGGCTCTGATGATTGATCCGGTCACAAACAAATCTTTGGTTAAAAAACAAGAAGTTGAGAAATGAACCGGAGTCAAGTGCATACCCCTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 924 bp | 307 aa | 52 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MEDYPTTILELEDRFSFEKDCREYLFKLRWPEGFRCSRCSHEQYWQRTNGLFECKGCGFQVSVTAGTIFQDTKKPLRLWFRAVWHVTSQKYGANALGLQR
VLGLGSYRTAWSWLHKLRRAMVRPGRDKLSGIVQVDESMFGGKRPGKRGRGASGKALVCIVAQVDGQRIGRIRLQVIPDASAESLEAAIMNTIEPGTVVQ
TDGWRGYNQLQKKGYAHEIVRSDYVIGDDLLPFCHRVASLLKRWLTGTHQGSVSHKHLGYYLDEFTFRFNRRTSRSRGKLFYRLIQQALMIDPVTNKSLV
KKQEVEK
VLGLGSYRTAWSWLHKLRRAMVRPGRDKLSGIVQVDESMFGGKRPGKRGRGASGKALVCIVAQVDGQRIGRIRLQVIPDASAESLEAAIMNTIEPGTVVQ
TDGWRGYNQLQKKGYAHEIVRSDYVIGDDLLPFCHRVASLLKRWLTGTHQGSVSHKHLGYYLDEFTFRFNRRTSRSRGKLFYRLIQQALMIDPVTNKSLV
KKQEVEK
Blast result :
Comments
ISDth3 is 74% aa similar to ISDal1.
References
1] ISfinder annotation (2016)
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Land,M.L., Hauser,L., Kyrpides,N., Mikhailova,N., Muyzer,G. and Woyke,T. (2010) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Land,M.L., Hauser,L., Kyrpides,N., Mikhailova,N., Muyzer,G. and Woyke,T. (2010) Direct GenBank submission.