ISBsi1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JZEK01000051 ND Brocadia sinica
Brocadia sinica
Candidatus Brocadia sinica
DNA section
IS Length : 1021 bp

Ends


IR Length : 22/27

IRL : ATGGGGTATTCACTTGACCGATGTTACCCCAAGATGTAGTATGTTGGGCT
IRR : GTAGGATATTCACTTGACTGATGTTGCTACTATATGTTGTATCTTTTCGG

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTGCGGTAATAATATTATATCCTTCTAAT9

DNA sequence

ATGGGGTATTCACTTGACCGATGTTACCCCAAGATGTAGTATGTTGGGCTATGGAAGATTATCCCAAAACCCTTACAGAGTTTGAAACTCGGTTTTCTAC
AGAGCAAGACTGCCGTGATTATCTTTTTCAAGTGAGATGGCCAAATGGCTTTATATGTCCGCATTGCGGCAGTAAAAAAGCCTGGCCAATTGGCGAAGTA
TTGTTTCACTGCGCCAATTGTGATTACAGAGTGTCTGTCATCGCGGGTACCATATTTCAGGATACGCACAAGTCTTTGACTTTGTGGTTTCGAGCTATCT
GGTGGATTACAGGGCAGAAAAATGGTGCCAGTGCATTGGGTTTGAAAAGAATGCTCGGACTTGGCAGTTATCGTACAGCATGGGCATGGTTGCATAAATT
GCGTCGCGCTATGGTTAGGCCTGGACGCGAGAAACTGTCTGAAGAAGTAGAAGTCGATGAGACCTACTATGGTGGCGAAAAACCAGGTAAAAGAGGACGA
GGTGCAGAGGGGAAAGCGTTGATAATTATTGCTGTTGAAGATAAAGGGGTTGGTGTTGGCCGTATCCGTCTCAAACAAGTGCCAGACGCCTCTGCTGATA
GTCTTAGTCCGTTTATTCAAGAAAACATTGAACCTGGCAGCACAATACACACGGATGCATGGCATGGTTATAATCAATTGACTCGTTTGGGGTATAAGCA
TAATGTTACGAATCAGAGATCGTCTGTTGGTGAAAATCCATTGCCACTTGTACATCATATAGCATCTCTCCTAAAACGGTGGCTCTTGGGAACCCATCAA
GGTGCCATAAGCCACGAACAGTTGAATTATTACCTTGATGAGTATACGTTTAGATTCAACCGGAGAACCTCGAAGCATCGCGGCAAGCTTTTCTACAGGC
TTCTTCAAAATGCAACACAAATAGAACCGACAACATTTGATAAAATAGTTAAACATACGAGAGGTCAAAAACCGAAAAGATACAACATATAGTAGCAACA
TCAGTCAAGTGAATATCCTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp323 aa51992+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEDYPKTLTEFETRFSTEQDCRDYLFQVRWPNGFICPHCGSKKAWPIGEVLFHCANCDYRVSVIAGTIFQDTHKSLTLWFRAIWWITGQKNGASALGLKR
MLGLGSYRTAWAWLHKLRRAMVRPGREKLSEEVEVDETYYGGEKPGKRGRGAEGKALIIIAVEDKGVGVGRIRLKQVPDASADSLSPFIQENIEPGSTIH
TDAWHGYNQLTRLGYKHNVTNQRSSVGENPLPLVHHIASLLKRWLLGTHQGAISHEQLNYYLDEYTFRFNRRTSKHRGKLFYRLLQNATQIEPTTFDKIV
KHTRGQKPKRYNI

 

Blast result :
Comments
ISBsi1 is 72% aa similar to ISDal1.
References
1] ISfinder annotation (2016)
2] Speth,D.R., In 't Zandt,M.H., Guerrero-Cruz,S., Dutilh,B.E. and Jetten,M.S. (2016) Nat Commun 7, 11172.