ISBsi1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JZEK01000051 | ND | Brocadia sinica | Brocadia sinica Candidatus Brocadia sinica |
DNA section
IS Length : 1021 bp
Ends
IR Length : 22/27
IRL : ATGGGGTATTCACTTGACCGATGTTACCCCAAGATGTAGTATGTTGGGCT
IRR : GTAGGATATTCACTTGACTGATGTTGCTACTATATGTTGTATCTTTTCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTTGCGGTAA | TAATATTAT | ATCCTTCTAAT | 9 |
DNA sequence
ATGGGGTATTCACTTGACCGATGTTACCCCAAGATGTAGTATGTTGGGCTATGGAAGATTATCCCAAAACCCTTACAGAGTTTGAAACTCGGTTTTCTAC
AGAGCAAGACTGCCGTGATTATCTTTTTCAAGTGAGATGGCCAAATGGCTTTATATGTCCGCATTGCGGCAGTAAAAAAGCCTGGCCAATTGGCGAAGTA
TTGTTTCACTGCGCCAATTGTGATTACAGAGTGTCTGTCATCGCGGGTACCATATTTCAGGATACGCACAAGTCTTTGACTTTGTGGTTTCGAGCTATCT
GGTGGATTACAGGGCAGAAAAATGGTGCCAGTGCATTGGGTTTGAAAAGAATGCTCGGACTTGGCAGTTATCGTACAGCATGGGCATGGTTGCATAAATT
GCGTCGCGCTATGGTTAGGCCTGGACGCGAGAAACTGTCTGAAGAAGTAGAAGTCGATGAGACCTACTATGGTGGCGAAAAACCAGGTAAAAGAGGACGA
GGTGCAGAGGGGAAAGCGTTGATAATTATTGCTGTTGAAGATAAAGGGGTTGGTGTTGGCCGTATCCGTCTCAAACAAGTGCCAGACGCCTCTGCTGATA
GTCTTAGTCCGTTTATTCAAGAAAACATTGAACCTGGCAGCACAATACACACGGATGCATGGCATGGTTATAATCAATTGACTCGTTTGGGGTATAAGCA
TAATGTTACGAATCAGAGATCGTCTGTTGGTGAAAATCCATTGCCACTTGTACATCATATAGCATCTCTCCTAAAACGGTGGCTCTTGGGAACCCATCAA
GGTGCCATAAGCCACGAACAGTTGAATTATTACCTTGATGAGTATACGTTTAGATTCAACCGGAGAACCTCGAAGCATCGCGGCAAGCTTTTCTACAGGC
TTCTTCAAAATGCAACACAAATAGAACCGACAACATTTGATAAAATAGTTAAACATACGAGAGGTCAAAAACCGAAAAGATACAACATATAGTAGCAACA
TCAGTCAAGTGAATATCCTAC
AGAGCAAGACTGCCGTGATTATCTTTTTCAAGTGAGATGGCCAAATGGCTTTATATGTCCGCATTGCGGCAGTAAAAAAGCCTGGCCAATTGGCGAAGTA
TTGTTTCACTGCGCCAATTGTGATTACAGAGTGTCTGTCATCGCGGGTACCATATTTCAGGATACGCACAAGTCTTTGACTTTGTGGTTTCGAGCTATCT
GGTGGATTACAGGGCAGAAAAATGGTGCCAGTGCATTGGGTTTGAAAAGAATGCTCGGACTTGGCAGTTATCGTACAGCATGGGCATGGTTGCATAAATT
GCGTCGCGCTATGGTTAGGCCTGGACGCGAGAAACTGTCTGAAGAAGTAGAAGTCGATGAGACCTACTATGGTGGCGAAAAACCAGGTAAAAGAGGACGA
GGTGCAGAGGGGAAAGCGTTGATAATTATTGCTGTTGAAGATAAAGGGGTTGGTGTTGGCCGTATCCGTCTCAAACAAGTGCCAGACGCCTCTGCTGATA
GTCTTAGTCCGTTTATTCAAGAAAACATTGAACCTGGCAGCACAATACACACGGATGCATGGCATGGTTATAATCAATTGACTCGTTTGGGGTATAAGCA
TAATGTTACGAATCAGAGATCGTCTGTTGGTGAAAATCCATTGCCACTTGTACATCATATAGCATCTCTCCTAAAACGGTGGCTCTTGGGAACCCATCAA
GGTGCCATAAGCCACGAACAGTTGAATTATTACCTTGATGAGTATACGTTTAGATTCAACCGGAGAACCTCGAAGCATCGCGGCAAGCTTTTCTACAGGC
TTCTTCAAAATGCAACACAAATAGAACCGACAACATTTGATAAAATAGTTAAACATACGAGAGGTCAAAAACCGAAAAGATACAACATATAGTAGCAACA
TCAGTCAAGTGAATATCCTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 323 aa | 51 | 992 | + | No |
Chemistry : DDE
ORF sequence :
MEDYPKTLTEFETRFSTEQDCRDYLFQVRWPNGFICPHCGSKKAWPIGEVLFHCANCDYRVSVIAGTIFQDTHKSLTLWFRAIWWITGQKNGASALGLKR
MLGLGSYRTAWAWLHKLRRAMVRPGREKLSEEVEVDETYYGGEKPGKRGRGAEGKALIIIAVEDKGVGVGRIRLKQVPDASADSLSPFIQENIEPGSTIH
TDAWHGYNQLTRLGYKHNVTNQRSSVGENPLPLVHHIASLLKRWLLGTHQGAISHEQLNYYLDEYTFRFNRRTSKHRGKLFYRLLQNATQIEPTTFDKIV
KHTRGQKPKRYNI
MLGLGSYRTAWAWLHKLRRAMVRPGREKLSEEVEVDETYYGGEKPGKRGRGAEGKALIIIAVEDKGVGVGRIRLKQVPDASADSLSPFIQENIEPGSTIH
TDAWHGYNQLTRLGYKHNVTNQRSSVGENPLPLVHHIASLLKRWLLGTHQGAISHEQLNYYLDEYTFRFNRRTSKHRGKLFYRLLQNATQIEPTTFDKIV
KHTRGQKPKRYNI
Blast result :
Comments
ISBsi1 is 72% aa similar to ISDal1.
References
1] ISfinder annotation (2016)
2] Speth,D.R., In 't Zandt,M.H., Guerrero-Cruz,S., Dutilh,B.E. and Jetten,M.S. (2016) Nat Commun 7, 11172.
2] Speth,D.R., In 't Zandt,M.H., Guerrero-Cruz,S., Dutilh,B.E. and Jetten,M.S. (2016) Nat Commun 7, 11172.