ISMaba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| LCDO01000047 | ND | Magasanikbacteria bacterium | Magasanikbacteria bacterium GW2011_GWA2_42_32 Candidatus Magasanikbacteria bacterium GW2011_GWA2_42_32 |
DNA section
IS Length : 965 bp
Ends
IR Length : 24
IRL : CTGGCATAGGCGCTTGACGCCACTAACGTCGTTGGGCACTGTTAGGTGAT
IRR : CTGGCATAGGCGCTTGACGCCACTGGCCGTTATTTGACCCGCAGCATCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGAAGATAGA | TAAAACAA | AATGTGAGAG | 8 |
DNA sequence
CTGGCATAGGCGCTTGACGCCACTAACGTCGTTGGGCACTGTTAGGTGATGGTTTTGGAGTATCCTCTGTCCATGCAGGAATTCATGGATCGATTTTCAA
CGGAAGAAGCGTGTCGACAATATCTGTCTGACGTTCGCTGGGCCGATGGTTTCAAGTGTCCCCGATGTTCTCATACTAATGCGTGGAAGCTTGGTCGCGG
GATACTAAAGTGCAAGAAATGCAAACGTGATGTTTCGGTTACTGCCGGGACTATTTTTCAAGGAAGACACTTGTCGCTTCGTCTTTGGTTCCAAGCACTG
TGGCTTGTTGTGGTTCAGAAAAATGGCGTCAGTGCGCTTGGACTTTCCCGAGCGCTCGGGATTCGCCGCCAAAAAACCGGGTGGCAACTATTGAAGAAGA
TCCGTACCGCCATGGTACGTACCGGTCGCGAGCGCCTGAATGGGCTCGTAGAGGTCGATGAGGTATTCATTGGCGGAGTTAAGCCAGGGATTCGAGGCCG
TGGCGCGCTCGGTAAAGTGCTCATACTTGTTGCCGTAGAAGACAAAGAGAAGAAAGGATTCGGTCGTATCCGCATTGAAATTATTCCCGATGCGTCCGCC
GTCACGCTGAAAACGACAATTAAAAAGATGGTGGAGCCGGGAAGCAAGGTTCGGACTGAGCAGTGGAAAGGATACACCCCCGTGGCTCCTGAGGGATACG
AACATATAGTGATGAAACGGCAATCGCTCGAACCCGGTGAAGATCCGACGCCACTGGTACATCGAATCGCCGCACTCTTGAAACGCTGGCTTCTCGGCAC
TCATCATGGGCGCGTTGAGGAAACGCACCTCGCCTCGTACCTTGATGAATTCGTTTTCAGGTTCAATCGACGCACGTCAGGGAGCCGAGGCAAATTATTC
TACCGGCTGGTTCAGGGGATGCTGCGGGTCAAATAACGGCCAGTGGCGTCAAGCGCCTATGCCAG
CGGAAGAAGCGTGTCGACAATATCTGTCTGACGTTCGCTGGGCCGATGGTTTCAAGTGTCCCCGATGTTCTCATACTAATGCGTGGAAGCTTGGTCGCGG
GATACTAAAGTGCAAGAAATGCAAACGTGATGTTTCGGTTACTGCCGGGACTATTTTTCAAGGAAGACACTTGTCGCTTCGTCTTTGGTTCCAAGCACTG
TGGCTTGTTGTGGTTCAGAAAAATGGCGTCAGTGCGCTTGGACTTTCCCGAGCGCTCGGGATTCGCCGCCAAAAAACCGGGTGGCAACTATTGAAGAAGA
TCCGTACCGCCATGGTACGTACCGGTCGCGAGCGCCTGAATGGGCTCGTAGAGGTCGATGAGGTATTCATTGGCGGAGTTAAGCCAGGGATTCGAGGCCG
TGGCGCGCTCGGTAAAGTGCTCATACTTGTTGCCGTAGAAGACAAAGAGAAGAAAGGATTCGGTCGTATCCGCATTGAAATTATTCCCGATGCGTCCGCC
GTCACGCTGAAAACGACAATTAAAAAGATGGTGGAGCCGGGAAGCAAGGTTCGGACTGAGCAGTGGAAAGGATACACCCCCGTGGCTCCTGAGGGATACG
AACATATAGTGATGAAACGGCAATCGCTCGAACCCGGTGAAGATCCGACGCCACTGGTACATCGAATCGCCGCACTCTTGAAACGCTGGCTTCTCGGCAC
TCATCATGGGCGCGTTGAGGAAACGCACCTCGCCTCGTACCTTGATGAATTCGTTTTCAGGTTCAATCGACGCACGTCAGGGAGCCGAGGCAAATTATTC
TACCGGCTGGTTCAGGGGATGCTGCGGGTCAAATAACGGCCAGTGGCGTCAAGCGCCTATGCCAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 852 bp | 283 aa | 85 | 936 | + | No |
Chemistry : DDE
ORF sequence :
MDRFSTEEACRQYLSDVRWADGFKCPRCSHTNAWKLGRGILKCKKCKRDVSVTAGTIFQGRHLSLRLWFQALWLVVVQKNGVSALGLSRALGIRRQKTGW
QLLKKIRTAMVRTGRERLNGLVEVDEVFIGGVKPGIRGRGALGKVLILVAVEDKEKKGFGRIRIEIIPDASAVTLKTTIKKMVEPGSKVRTEQWKGYTPV
APEGYEHIVMKRQSLEPGEDPTPLVHRIAALLKRWLLGTHHGRVEETHLASYLDEFVFRFNRRTSGSRGKLFYRLVQGMLRVK
QLLKKIRTAMVRTGRERLNGLVEVDEVFIGGVKPGIRGRGALGKVLILVAVEDKEKKGFGRIRIEIIPDASAVTLKTTIKKMVEPGSKVRTEQWKGYTPV
APEGYEHIVMKRQSLEPGEDPTPLVHRIAALLKRWLLGTHHGRVEETHLASYLDEFVFRFNRRTSGSRGKLFYRLVQGMLRVK
Blast result :
Comments
ISMaba1 is 68% aa similar to ISDal1.
References
1] ISfinder annotation (2016).
2] Brown,C.T., Hug,L.A., Thomas,B.C., Sharon,I., Castelle,C.J., Singh,A., Wilkins,M.J., Williams,K.H. and Banfield,J.F. (2015) Direct GenBank submission.
2] Brown,C.T., Hug,L.A., Thomas,B.C., Sharon,I., Castelle,C.J., Singh,A., Wilkins,M.J., Williams,K.H. and Banfield,J.F. (2015) Direct GenBank submission.