ISRop3

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CAVJ010000042 ND Rhodococcus opacus
Rhodococcus opacus EsD8
DNA section
IS Length : 1007 bp

Ends


IR Length : 23/24

IRL : GATGCTTATCCGGTTAGATCAGGTATCCTGTGCAAATGCCGCGTCCTGAC
IRR : CATGCTTATCCGGTTAGATCAGGTGAGTTTGGCTGCGCCCGGTCCGGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCGCCGATAAGCGCGATTATGTCAAGT8

DNA sequence

GATGCTTATCCGGTTAGATCAGGTATCCTGTGCAAATGCCGCGTCCTGACTTCCCGCGCACAATCGTGGAGTTCCAGCGGCGCTTCCCTGATGACGACGC
CTGTATGGAGTACCTGTTCGCGTCGCGTTGGCCCGACGGGTTCGCCTGTCCGCGCTGTAGCCACGGGCAGACGTGGCCGGTGGCCAAGCGTCGGCTGGTG
TGGGAGTGCGCCGCCTGTCGCCGGCAGACGTCGGTCACCGCGGGCACGGTGCTGCACAAGACGCACACCCCGCTGCATCTGTGGTTCTGGGCGGCCTACC
TGATGAGCACGCCGACACCCGGGATCTCGGCGGTGCAGCTGCAGCGCCAGCTGGGCCTGGGGCGCTACGAGACGGCGTGGACGATGCTGCACAAGCTGCG
CCGGGCGATGGCCAACCCGGAACGGCAGCACCTGCTCGACGAGGTCGAGGTCGATGAGTGCTTCGTCGGCGGGCACGAAGCCGGCTTACGTGGCGGGCGG
GCTCATGGCACGAAAGCACTTGTGGCAGTGGGGGTAGAGGTCCGCGGCGCGGGCAGCGGAAGGGCCCGCATGGTGGTCGTCGACGACGCGTCCGCCGCCG
CACTCACCGGCTTTGTCCGCGACAACGTCGCCGCCGGCGCCACCGTGCACACCGACGCCTGGCGCGGCTACCGGCCACTGACCGGGCTCGCCTACGATCA
CCGGCCACGCAGCCAGCGGGCAGCCCGCGCAGACGGCGAAGGCATCGACGAGATACTGCCCCGCGTGCACCGGGTGATCTCCAACCTCAAGAGCTGGCTG
CAAGGAACCCACCGCGGAGTGTCCGGCGAGCACCTGCAGGTCTACCTGAACGAGTACACCTTCCGATTCAACCGCCGCCATACCCCGATGGCCGCCTTCC
AGACCCTGCTCGGCCTGCAGTCCCAGCAGCAGCCCACGACCTACCGGCAGATCATCGCGACCGGACCGGGCGCAGCCAAACTCACCTGATCTAACCGGAT
AAGCATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa105989+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEYLFASRWPDGFACPRCSHGQTWPVAKRRLVWECAACRRQTSVTAGTVLHKTHTPLHLWFWAAYLMSTPTPGISAVQLQRQLGLGRYETAWTMLHKLRR
AMANPERQHLLDEVEVDECFVGGHEAGLRGGRAHGTKALVAVGVEVRGAGSGRARMVVVDDASAAALTGFVRDNVAAGATVHTDAWRGYRPLTGLAYDHR
PRSQRAARADGEGIDEILPRVHRVISNLKSWLQGTHRGVSGEHLQVYLNEYTFRFNRRHTPMAAFQTLLGLQSQQQPTTYRQIIATGPGAAKLT

 

Blast result :
Comments
ISRop3 is 61% aa similar to ISAan1.
References
1] ISfinder annotation (2016).
2] Nielsen,J.L., Zhou,N.A. and Kjeldal,H. (2013) Direct GenBank submission.