ISRop3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CAVJ010000042 | ND | Rhodococcus opacus | Rhodococcus opacus EsD8 |
DNA section
IS Length : 1007 bp
Ends
IR Length : 23/24
IRL : GATGCTTATCCGGTTAGATCAGGTATCCTGTGCAAATGCCGCGTCCTGAC
IRR : CATGCTTATCCGGTTAGATCAGGTGAGTTTGGCTGCGCCCGGTCCGGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCGCCGATA | AGCGCGAT | TATGTCAAGT | 8 |
DNA sequence
GATGCTTATCCGGTTAGATCAGGTATCCTGTGCAAATGCCGCGTCCTGACTTCCCGCGCACAATCGTGGAGTTCCAGCGGCGCTTCCCTGATGACGACGC
CTGTATGGAGTACCTGTTCGCGTCGCGTTGGCCCGACGGGTTCGCCTGTCCGCGCTGTAGCCACGGGCAGACGTGGCCGGTGGCCAAGCGTCGGCTGGTG
TGGGAGTGCGCCGCCTGTCGCCGGCAGACGTCGGTCACCGCGGGCACGGTGCTGCACAAGACGCACACCCCGCTGCATCTGTGGTTCTGGGCGGCCTACC
TGATGAGCACGCCGACACCCGGGATCTCGGCGGTGCAGCTGCAGCGCCAGCTGGGCCTGGGGCGCTACGAGACGGCGTGGACGATGCTGCACAAGCTGCG
CCGGGCGATGGCCAACCCGGAACGGCAGCACCTGCTCGACGAGGTCGAGGTCGATGAGTGCTTCGTCGGCGGGCACGAAGCCGGCTTACGTGGCGGGCGG
GCTCATGGCACGAAAGCACTTGTGGCAGTGGGGGTAGAGGTCCGCGGCGCGGGCAGCGGAAGGGCCCGCATGGTGGTCGTCGACGACGCGTCCGCCGCCG
CACTCACCGGCTTTGTCCGCGACAACGTCGCCGCCGGCGCCACCGTGCACACCGACGCCTGGCGCGGCTACCGGCCACTGACCGGGCTCGCCTACGATCA
CCGGCCACGCAGCCAGCGGGCAGCCCGCGCAGACGGCGAAGGCATCGACGAGATACTGCCCCGCGTGCACCGGGTGATCTCCAACCTCAAGAGCTGGCTG
CAAGGAACCCACCGCGGAGTGTCCGGCGAGCACCTGCAGGTCTACCTGAACGAGTACACCTTCCGATTCAACCGCCGCCATACCCCGATGGCCGCCTTCC
AGACCCTGCTCGGCCTGCAGTCCCAGCAGCAGCCCACGACCTACCGGCAGATCATCGCGACCGGACCGGGCGCAGCCAAACTCACCTGATCTAACCGGAT
AAGCATG
CTGTATGGAGTACCTGTTCGCGTCGCGTTGGCCCGACGGGTTCGCCTGTCCGCGCTGTAGCCACGGGCAGACGTGGCCGGTGGCCAAGCGTCGGCTGGTG
TGGGAGTGCGCCGCCTGTCGCCGGCAGACGTCGGTCACCGCGGGCACGGTGCTGCACAAGACGCACACCCCGCTGCATCTGTGGTTCTGGGCGGCCTACC
TGATGAGCACGCCGACACCCGGGATCTCGGCGGTGCAGCTGCAGCGCCAGCTGGGCCTGGGGCGCTACGAGACGGCGTGGACGATGCTGCACAAGCTGCG
CCGGGCGATGGCCAACCCGGAACGGCAGCACCTGCTCGACGAGGTCGAGGTCGATGAGTGCTTCGTCGGCGGGCACGAAGCCGGCTTACGTGGCGGGCGG
GCTCATGGCACGAAAGCACTTGTGGCAGTGGGGGTAGAGGTCCGCGGCGCGGGCAGCGGAAGGGCCCGCATGGTGGTCGTCGACGACGCGTCCGCCGCCG
CACTCACCGGCTTTGTCCGCGACAACGTCGCCGCCGGCGCCACCGTGCACACCGACGCCTGGCGCGGCTACCGGCCACTGACCGGGCTCGCCTACGATCA
CCGGCCACGCAGCCAGCGGGCAGCCCGCGCAGACGGCGAAGGCATCGACGAGATACTGCCCCGCGTGCACCGGGTGATCTCCAACCTCAAGAGCTGGCTG
CAAGGAACCCACCGCGGAGTGTCCGGCGAGCACCTGCAGGTCTACCTGAACGAGTACACCTTCCGATTCAACCGCCGCCATACCCCGATGGCCGCCTTCC
AGACCCTGCTCGGCCTGCAGTCCCAGCAGCAGCCCACGACCTACCGGCAGATCATCGCGACCGGACCGGGCGCAGCCAAACTCACCTGATCTAACCGGAT
AAGCATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 105 | 989 | + | No |
Chemistry : DDE
ORF sequence :
MEYLFASRWPDGFACPRCSHGQTWPVAKRRLVWECAACRRQTSVTAGTVLHKTHTPLHLWFWAAYLMSTPTPGISAVQLQRQLGLGRYETAWTMLHKLRR
AMANPERQHLLDEVEVDECFVGGHEAGLRGGRAHGTKALVAVGVEVRGAGSGRARMVVVDDASAAALTGFVRDNVAAGATVHTDAWRGYRPLTGLAYDHR
PRSQRAARADGEGIDEILPRVHRVISNLKSWLQGTHRGVSGEHLQVYLNEYTFRFNRRHTPMAAFQTLLGLQSQQQPTTYRQIIATGPGAAKLT
AMANPERQHLLDEVEVDECFVGGHEAGLRGGRAHGTKALVAVGVEVRGAGSGRARMVVVDDASAAALTGFVRDNVAAGATVHTDAWRGYRPLTGLAYDHR
PRSQRAARADGEGIDEILPRVHRVISNLKSWLQGTHRGVSGEHLQVYLNEYTFRFNRRHTPMAAFQTLLGLQSQQQPTTYRQIIATGPGAAKLT
Blast result :
Comments
ISRop3 is 61% aa similar to ISAan1.
References
1] ISfinder annotation (2016).
2] Nielsen,J.L., Zhou,N.A. and Kjeldal,H. (2013) Direct GenBank submission.
2] Nielsen,J.L., Zhou,N.A. and Kjeldal,H. (2013) Direct GenBank submission.