ISPto11
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003879 | ND | Psychroflexus torquis | Psychroflexus torquis ATCC 700755 |
DNA section
IS Length : 958 bp
Ends
IR Length : 20/26
IRL : TAGAGGTAAGTATATAAATACCTATTTTAGTGTTAGTAAATATATATAAT
IRR : TAGAGGTCAGTAGTTAGTTACTTATTAATTCTGATTGATATATTTTGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAAAATAG | TAAATTTAAT | 0 |
DNA sequence
TAGAGGTAAGTATATAAATACCTATTTTAGTGTTAGTAAATATATATAATTATGGACGTATTTAAGGGTCAAAATCTTTTAGAGTTCTCTGATCGGTTCA
AAACAGACGAAGATTGCAAGAAATATTTAGCTTCAGTGAAGTCAGAAATTCGATATAAATGTCTCAGGTGTAATCACACTGCTTGTCAAGTTCGTACTGA
TTTTGCAAGGCAGTGCAACATCTGCGGGCACATAGAATCTACTACTGCCAACACTCTTTTTCACAAAGTTAAGTTTGGAGTCAGAAAGGCATTTTTTATC
TGCTTCGAAATGGCTACTAGCACTAAAAGTTTATCAGCAAGTTATATGGGTGTGCGTTATGGTGTGACTGAAAAAACTGCTCGACTATTTATGTTGAAAG
TCAGAGAGGCTATGGCTTCTAGTGGGAAAAACCCTATGGATGGCGATGTTCACGTTGATGAGTTTGTCCTTGGGGGCCGAGAAGCAGGGAAAACAGGAAG
AAGCTATGATAGCAAGAAAAAGAAGGCGATAACGGCCATCCAGCTTACAAAGGAGGGTAAGGTAAAGAGGATGTATGCTATGAAAATAGATGATTTTTCA
GCCCGATCATTGCAATATATTTTTGTCAATCATATTAGCAGAGAAGCGATGGTCACAACAGATAAATGGAGAGGATATAGACCCATTTCAAAAGCTTATG
ACATAACACAGATTGAGAGTAACAGAGGATCGAATTTTAAAGCGCTCCATATAATGATACATCAAGTTAAATCTTGGATCAGAACGACCTATTCTTGGGT
AAGTGATAATAATCTAAATAGATATTTCAGTGAATTTTGTTTTAGAATAAATCGATCACGGAGTAAAGCAACTATATTCAATAATCTAATTGTCAAAATG
GTGGAAGGAGACAAAATATATCAATCAGAATTAATAAGTAACTAACTACTGACCTCTA
AAACAGACGAAGATTGCAAGAAATATTTAGCTTCAGTGAAGTCAGAAATTCGATATAAATGTCTCAGGTGTAATCACACTGCTTGTCAAGTTCGTACTGA
TTTTGCAAGGCAGTGCAACATCTGCGGGCACATAGAATCTACTACTGCCAACACTCTTTTTCACAAAGTTAAGTTTGGAGTCAGAAAGGCATTTTTTATC
TGCTTCGAAATGGCTACTAGCACTAAAAGTTTATCAGCAAGTTATATGGGTGTGCGTTATGGTGTGACTGAAAAAACTGCTCGACTATTTATGTTGAAAG
TCAGAGAGGCTATGGCTTCTAGTGGGAAAAACCCTATGGATGGCGATGTTCACGTTGATGAGTTTGTCCTTGGGGGCCGAGAAGCAGGGAAAACAGGAAG
AAGCTATGATAGCAAGAAAAAGAAGGCGATAACGGCCATCCAGCTTACAAAGGAGGGTAAGGTAAAGAGGATGTATGCTATGAAAATAGATGATTTTTCA
GCCCGATCATTGCAATATATTTTTGTCAATCATATTAGCAGAGAAGCGATGGTCACAACAGATAAATGGAGAGGATATAGACCCATTTCAAAAGCTTATG
ACATAACACAGATTGAGAGTAACAGAGGATCGAATTTTAAAGCGCTCCATATAATGATACATCAAGTTAAATCTTGGATCAGAACGACCTATTCTTGGGT
AAGTGATAATAATCTAAATAGATATTTCAGTGAATTTTGTTTTAGAATAAATCGATCACGGAGTAAAGCAACTATATTCAATAATCTAATTGTCAAAATG
GTGGAAGGAGACAAAATATATCAATCAGAATTAATAAGTAACTAACTACTGACCTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 52 | 945 | + | No |
Chemistry : DDE
ORF sequence :
MDVFKGQNLLEFSDRFKTDEDCKKYLASVKSEIRYKCLRCNHTACQVRTDFARQCNICGHIESTTANTLFHKVKFGVRKAFFICFEMATSTKSLSASYMG
VRYGVTEKTARLFMLKVREAMASSGKNPMDGDVHVDEFVLGGREAGKTGRSYDSKKKKAITAIQLTKEGKVKRMYAMKIDDFSARSLQYIFVNHISREAM
VTTDKWRGYRPISKAYDITQIESNRGSNFKALHIMIHQVKSWIRTTYSWVSDNNLNRYFSEFCFRINRSRSKATIFNNLIVKMVEGDKIYQSELISN
VRYGVTEKTARLFMLKVREAMASSGKNPMDGDVHVDEFVLGGREAGKTGRSYDSKKKKAITAIQLTKEGKVKRMYAMKIDDFSARSLQYIFVNHISREAM
VTTDKWRGYRPISKAYDITQIESNRGSNFKALHIMIHQVKSWIRTTYSWVSDNNLNRYFSEFCFRINRSRSKATIFNNLIVKMVEGDKIYQSELISN
Blast result :
Comments
ISPto11 is 92% aa similar to ISCal2.
References
1] ISfinder annotation (2016)
2] Feng,S., Powell,S.M. and Bowman,J.P. (2012) Direct GenBank submission.
2] Feng,S., Powell,S.M. and Bowman,J.P. (2012) Direct GenBank submission.