ISPto11

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003879 ND Psychroflexus torquis
Psychroflexus torquis ATCC 700755
DNA section
IS Length : 958 bp

Ends


IR Length : 20/26

IRL : TAGAGGTAAGTATATAAATACCTATTTTAGTGTTAGTAAATATATATAAT
IRR : TAGAGGTCAGTAGTTAGTTACTTATTAATTCTGATTGATATATTTTGTCT

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAAAATAGTAAATTTAAT0

DNA sequence

TAGAGGTAAGTATATAAATACCTATTTTAGTGTTAGTAAATATATATAATTATGGACGTATTTAAGGGTCAAAATCTTTTAGAGTTCTCTGATCGGTTCA
AAACAGACGAAGATTGCAAGAAATATTTAGCTTCAGTGAAGTCAGAAATTCGATATAAATGTCTCAGGTGTAATCACACTGCTTGTCAAGTTCGTACTGA
TTTTGCAAGGCAGTGCAACATCTGCGGGCACATAGAATCTACTACTGCCAACACTCTTTTTCACAAAGTTAAGTTTGGAGTCAGAAAGGCATTTTTTATC
TGCTTCGAAATGGCTACTAGCACTAAAAGTTTATCAGCAAGTTATATGGGTGTGCGTTATGGTGTGACTGAAAAAACTGCTCGACTATTTATGTTGAAAG
TCAGAGAGGCTATGGCTTCTAGTGGGAAAAACCCTATGGATGGCGATGTTCACGTTGATGAGTTTGTCCTTGGGGGCCGAGAAGCAGGGAAAACAGGAAG
AAGCTATGATAGCAAGAAAAAGAAGGCGATAACGGCCATCCAGCTTACAAAGGAGGGTAAGGTAAAGAGGATGTATGCTATGAAAATAGATGATTTTTCA
GCCCGATCATTGCAATATATTTTTGTCAATCATATTAGCAGAGAAGCGATGGTCACAACAGATAAATGGAGAGGATATAGACCCATTTCAAAAGCTTATG
ACATAACACAGATTGAGAGTAACAGAGGATCGAATTTTAAAGCGCTCCATATAATGATACATCAAGTTAAATCTTGGATCAGAACGACCTATTCTTGGGT
AAGTGATAATAATCTAAATAGATATTTCAGTGAATTTTGTTTTAGAATAAATCGATCACGGAGTAAAGCAACTATATTCAATAATCTAATTGTCAAAATG
GTGGAAGGAGACAAAATATATCAATCAGAATTAATAAGTAACTAACTACTGACCTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa52945+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVFKGQNLLEFSDRFKTDEDCKKYLASVKSEIRYKCLRCNHTACQVRTDFARQCNICGHIESTTANTLFHKVKFGVRKAFFICFEMATSTKSLSASYMG
VRYGVTEKTARLFMLKVREAMASSGKNPMDGDVHVDEFVLGGREAGKTGRSYDSKKKKAITAIQLTKEGKVKRMYAMKIDDFSARSLQYIFVNHISREAM
VTTDKWRGYRPISKAYDITQIESNRGSNFKALHIMIHQVKSWIRTTYSWVSDNNLNRYFSEFCFRINRSRSKATIFNNLIVKMVEGDKIYQSELISN

 

Blast result :
Comments
ISPto11 is 92% aa similar to ISCal2.
References
1] ISfinder annotation (2016)
2] Feng,S., Powell,S.M. and Bowman,J.P. (2012) Direct GenBank submission.