ISVasp1

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOUG01000048 ND Variovorax sp.
Variovorax sp. OV329
DNA section
IS Length : 2540 bp

Ends


IR Length : 19/26

IRL : TGTTGATTtccatctagaagtgacccactaaccccggcgatttccatcta
IRR : tgttgagttccatgcaatcctgacccggcatttccatccaatattgaccc

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTTGATTTCCATCTAGAAGTGACCCACTAACCCCGGCGATTTCCATCTAAATCTGACCCACGTAAGAACCCTAACCTGCTGCTTTTAGTGGCAGGAGCA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATTCGAGAGATAGCCCGACGCACGGGCCTGTCTCG
CAACACCATCCGCAAGTACCTGCGCGAGGGCGAGGCGGCGCCGAGTTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGACGCCTTCGCCGAGAAGCTCAGT
ATCTGGCTCAAGAGCGAGGCATCGAGGTCACGCAAGCAGCGGCGCACCCTCAAGCAGATGCACGCCGACCTGGCGGCGCTCGGCTACCAGGGCTCCTATA
ACCGCGTGGCAGCGTTCGCACGAGCGTGGCATACACATCGCCGCGAGGTCGAGCAGACCACCGGGCGAGGCACCTTCGTGCCGCTGGCCTTCGGTCCAGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGGCGGTGAGCGCACCAAGCTGCAGGTCGCGCACTTCAAGCTCAGTCACAGCCGGGCC
TTCCTCGTGCGGGCGTACCCGCTGCAGACCCACGAGATGCTGTTCGATGCGCACAACCGCGCCTTCGAGGTGCTGGGCGGCGTGCCACGGCGCGGCATCT
ACGACAACATGAAGACCGCCGTGGACCGGGTGCGCCGCGGCAAGGAGCGCGATGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCCTCCGGTTGGGAGAAGGGCCAGGTGGAGAAGAACGTGCGCGATGCGCGCCACCGGCTGTGGCAGCCCGTGCCTGCGTTCGCG
ACGCTGCCGCTGCTCAACGACTGGCTCGAGCACCGCTGCAAGGCGCTGTGGGGCGAGATCGTTCACGGCAAGCAACCTGGCACCGTGGCGGATGTGTGGG
CGCAGGAGCAACCGCTCCTGATGCCCGTTCCTCGTCCCTTCGACGGCTTCATCGAGCACACCAAGCGCGTGTCGCCCACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTTCCCGCGTCGTATGCGAACCGTCCGGTGAGCCTGCGGGTCTACGCGGATCGCCTGGTCGTGGCGGCCGAAGGCCAACTCTTGTGC
GAGCACACCCGCATCATCGACCGGCGCCATGACACCGCGGGCCAGACCGTCTACGACTGGCGCCATTACTTGGCGGTGCTGCAGCGCAAGCCCGGGGCGT
TGAGGAACGGCGCGCCCTTCAGTGAACTGCCACAGGGCTTCCGACGGTTGCAGGCCGTCCTGCTCAAGCAGCCCGGCGGCGACCGGGAGATGGTGGAGAT
CCTCGCACTCGTGCTGCACCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGGCCCTGGAAGCCGGCGTGGCGAGCAAGACGCATGTGCTGAACGTC
CTGCACCGACTGCTCGACGGCAAGCCGGTGGCGCCAGCGCCAGTGACGGCGCCCCAGGCGTTGCGCCTGGCAAACGAGCCCCAGGCCAACTTGTTGCGCT
ACGACTCCCTCAGAGGGCGCGTGACCGCAGTTGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTGATCATGC
TGCGCGAACTCAAGATGCACGGCATGGCGCATGCCGTGGCCGAGCTTGCCGAGCAGGGCTCGCCGGCCTTCGAGTCCGCGCAGCCGGTCCTCTCGCAGTT
GCTCAAGGCGGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCTTACCAACTGAAGCTGGCACGCTTCCCGGTCTACCGGGACCTCGCAGGCTTCGACTTC
GCTCACAGCGAGGTGAACGAAGCCTTGGTCCGTCAGTTGCATCGCTGTGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGTCCTGGCACGG
GAAAGACCCACATCGCGACGGCGCTCGGCGTGCAGGCCATCGAGCATCACCACCGGCGCGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCGCTGGA
GCAGGAGAAGGCCAGCGGCAACCCGGGCCACATCGCGCATCGGCTGATGTACGCCGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGTGCGCTGCTATTCCATCTGCTGTCCAAGCTCTACGAGCGCACCAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTCT
TCGGCGATGCGAAGATGACGACAGCGTTGCTGGACCGGCTCACGCACCACTGCCATATCCTGGAGACTGGCAACGACAGCTTCCGGTTCAAGCACAGCTC
GGCTCAACCAGTTCAGGCAGACCAATCTAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCACCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1566 bp518 aa1061671+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLREGEAAPSYAKRVSPSKLDAFAEKLSIWLKSEASRSRKQRRTLKQMHADLAALGYQGSYNR
VAAFARAWHTHRREVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLPLLNDWLEHRCKALWGEIVHGKQPGTVADVWAQ
EQPLLMPVPRPFDGFIEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQAVLLKQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANLLRYD
SLRGRVTAVDPIIIQEVRHAP

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
807 bp268 aa16612467+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRHDPASAAIVIMLRELKMHGMAHAVAELAEQGSPAFESAQPVLSQLLKAETAEREVRSVAYQLKLARFPVYRDLAGFDFAHSEVNEALVRQLHRCEFME
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQSRKKEKTKNLSTP

 

Blast result :
Comments
ISVasp1 is 97% (transposase) and 98% (IS21 helper) aa similar to ISPpn1.
References