ISVasp1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FOUG01000048 | ND | Variovorax sp. | Variovorax sp. OV329 |
DNA section
IS Length : 2540 bp
Ends
IR Length : 19/26
IRL : TGTTGATTtccatctagaagtgacccactaaccccggcgatttccatcta
IRR : tgttgagttccatgcaatcctgacccggcatttccatccaatattgaccc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTTGATTTCCATCTAGAAGTGACCCACTAACCCCGGCGATTTCCATCTAAATCTGACCCACGTAAGAACCCTAACCTGCTGCTTTTAGTGGCAGGAGCA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATTCGAGAGATAGCCCGACGCACGGGCCTGTCTCG
CAACACCATCCGCAAGTACCTGCGCGAGGGCGAGGCGGCGCCGAGTTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGACGCCTTCGCCGAGAAGCTCAGT
ATCTGGCTCAAGAGCGAGGCATCGAGGTCACGCAAGCAGCGGCGCACCCTCAAGCAGATGCACGCCGACCTGGCGGCGCTCGGCTACCAGGGCTCCTATA
ACCGCGTGGCAGCGTTCGCACGAGCGTGGCATACACATCGCCGCGAGGTCGAGCAGACCACCGGGCGAGGCACCTTCGTGCCGCTGGCCTTCGGTCCAGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGGCGGTGAGCGCACCAAGCTGCAGGTCGCGCACTTCAAGCTCAGTCACAGCCGGGCC
TTCCTCGTGCGGGCGTACCCGCTGCAGACCCACGAGATGCTGTTCGATGCGCACAACCGCGCCTTCGAGGTGCTGGGCGGCGTGCCACGGCGCGGCATCT
ACGACAACATGAAGACCGCCGTGGACCGGGTGCGCCGCGGCAAGGAGCGCGATGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCCTCCGGTTGGGAGAAGGGCCAGGTGGAGAAGAACGTGCGCGATGCGCGCCACCGGCTGTGGCAGCCCGTGCCTGCGTTCGCG
ACGCTGCCGCTGCTCAACGACTGGCTCGAGCACCGCTGCAAGGCGCTGTGGGGCGAGATCGTTCACGGCAAGCAACCTGGCACCGTGGCGGATGTGTGGG
CGCAGGAGCAACCGCTCCTGATGCCCGTTCCTCGTCCCTTCGACGGCTTCATCGAGCACACCAAGCGCGTGTCGCCCACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTTCCCGCGTCGTATGCGAACCGTCCGGTGAGCCTGCGGGTCTACGCGGATCGCCTGGTCGTGGCGGCCGAAGGCCAACTCTTGTGC
GAGCACACCCGCATCATCGACCGGCGCCATGACACCGCGGGCCAGACCGTCTACGACTGGCGCCATTACTTGGCGGTGCTGCAGCGCAAGCCCGGGGCGT
TGAGGAACGGCGCGCCCTTCAGTGAACTGCCACAGGGCTTCCGACGGTTGCAGGCCGTCCTGCTCAAGCAGCCCGGCGGCGACCGGGAGATGGTGGAGAT
CCTCGCACTCGTGCTGCACCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGGCCCTGGAAGCCGGCGTGGCGAGCAAGACGCATGTGCTGAACGTC
CTGCACCGACTGCTCGACGGCAAGCCGGTGGCGCCAGCGCCAGTGACGGCGCCCCAGGCGTTGCGCCTGGCAAACGAGCCCCAGGCCAACTTGTTGCGCT
ACGACTCCCTCAGAGGGCGCGTGACCGCAGTTGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTGATCATGC
TGCGCGAACTCAAGATGCACGGCATGGCGCATGCCGTGGCCGAGCTTGCCGAGCAGGGCTCGCCGGCCTTCGAGTCCGCGCAGCCGGTCCTCTCGCAGTT
GCTCAAGGCGGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCTTACCAACTGAAGCTGGCACGCTTCCCGGTCTACCGGGACCTCGCAGGCTTCGACTTC
GCTCACAGCGAGGTGAACGAAGCCTTGGTCCGTCAGTTGCATCGCTGTGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGTCCTGGCACGG
GAAAGACCCACATCGCGACGGCGCTCGGCGTGCAGGCCATCGAGCATCACCACCGGCGCGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCGCTGGA
GCAGGAGAAGGCCAGCGGCAACCCGGGCCACATCGCGCATCGGCTGATGTACGCCGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGTGCGCTGCTATTCCATCTGCTGTCCAAGCTCTACGAGCGCACCAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTCT
TCGGCGATGCGAAGATGACGACAGCGTTGCTGGACCGGCTCACGCACCACTGCCATATCCTGGAGACTGGCAACGACAGCTTCCGGTTCAAGCACAGCTC
GGCTCAACCAGTTCAGGCAGACCAATCTAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCACCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATTCGAGAGATAGCCCGACGCACGGGCCTGTCTCG
CAACACCATCCGCAAGTACCTGCGCGAGGGCGAGGCGGCGCCGAGTTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGACGCCTTCGCCGAGAAGCTCAGT
ATCTGGCTCAAGAGCGAGGCATCGAGGTCACGCAAGCAGCGGCGCACCCTCAAGCAGATGCACGCCGACCTGGCGGCGCTCGGCTACCAGGGCTCCTATA
ACCGCGTGGCAGCGTTCGCACGAGCGTGGCATACACATCGCCGCGAGGTCGAGCAGACCACCGGGCGAGGCACCTTCGTGCCGCTGGCCTTCGGTCCAGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGGCGGTGAGCGCACCAAGCTGCAGGTCGCGCACTTCAAGCTCAGTCACAGCCGGGCC
TTCCTCGTGCGGGCGTACCCGCTGCAGACCCACGAGATGCTGTTCGATGCGCACAACCGCGCCTTCGAGGTGCTGGGCGGCGTGCCACGGCGCGGCATCT
ACGACAACATGAAGACCGCCGTGGACCGGGTGCGCCGCGGCAAGGAGCGCGATGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCCTCCGGTTGGGAGAAGGGCCAGGTGGAGAAGAACGTGCGCGATGCGCGCCACCGGCTGTGGCAGCCCGTGCCTGCGTTCGCG
ACGCTGCCGCTGCTCAACGACTGGCTCGAGCACCGCTGCAAGGCGCTGTGGGGCGAGATCGTTCACGGCAAGCAACCTGGCACCGTGGCGGATGTGTGGG
CGCAGGAGCAACCGCTCCTGATGCCCGTTCCTCGTCCCTTCGACGGCTTCATCGAGCACACCAAGCGCGTGTCGCCCACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTTCCCGCGTCGTATGCGAACCGTCCGGTGAGCCTGCGGGTCTACGCGGATCGCCTGGTCGTGGCGGCCGAAGGCCAACTCTTGTGC
GAGCACACCCGCATCATCGACCGGCGCCATGACACCGCGGGCCAGACCGTCTACGACTGGCGCCATTACTTGGCGGTGCTGCAGCGCAAGCCCGGGGCGT
TGAGGAACGGCGCGCCCTTCAGTGAACTGCCACAGGGCTTCCGACGGTTGCAGGCCGTCCTGCTCAAGCAGCCCGGCGGCGACCGGGAGATGGTGGAGAT
CCTCGCACTCGTGCTGCACCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGGCCCTGGAAGCCGGCGTGGCGAGCAAGACGCATGTGCTGAACGTC
CTGCACCGACTGCTCGACGGCAAGCCGGTGGCGCCAGCGCCAGTGACGGCGCCCCAGGCGTTGCGCCTGGCAAACGAGCCCCAGGCCAACTTGTTGCGCT
ACGACTCCCTCAGAGGGCGCGTGACCGCAGTTGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTGATCATGC
TGCGCGAACTCAAGATGCACGGCATGGCGCATGCCGTGGCCGAGCTTGCCGAGCAGGGCTCGCCGGCCTTCGAGTCCGCGCAGCCGGTCCTCTCGCAGTT
GCTCAAGGCGGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCTTACCAACTGAAGCTGGCACGCTTCCCGGTCTACCGGGACCTCGCAGGCTTCGACTTC
GCTCACAGCGAGGTGAACGAAGCCTTGGTCCGTCAGTTGCATCGCTGTGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGTCCTGGCACGG
GAAAGACCCACATCGCGACGGCGCTCGGCGTGCAGGCCATCGAGCATCACCACCGGCGCGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCGCTGGA
GCAGGAGAAGGCCAGCGGCAACCCGGGCCACATCGCGCATCGGCTGATGTACGCCGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGTGCGCTGCTATTCCATCTGCTGTCCAAGCTCTACGAGCGCACCAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTCT
TCGGCGATGCGAAGATGACGACAGCGTTGCTGGACCGGCTCACGCACCACTGCCATATCCTGGAGACTGGCAACGACAGCTTCCGGTTCAAGCACAGCTC
GGCTCAACCAGTTCAGGCAGACCAATCTAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCACCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1566 bp | 518 aa | 106 | 1671 | + | No |
Chemistry : DDE
ORF sequence :
MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLREGEAAPSYAKRVSPSKLDAFAEKLSIWLKSEASRSRKQRRTLKQMHADLAALGYQGSYNR
VAAFARAWHTHRREVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLPLLNDWLEHRCKALWGEIVHGKQPGTVADVWAQ
EQPLLMPVPRPFDGFIEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQAVLLKQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANLLRYD
SLRGRVTAVDPIIIQEVRHAP
VAAFARAWHTHRREVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLPLLNDWLEHRCKALWGEIVHGKQPGTVADVWAQ
EQPLLMPVPRPFDGFIEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQAVLLKQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANLLRYD
SLRGRVTAVDPIIIQEVRHAP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
807 bp | 268 aa | 1661 | 2467 | + | No |
AG : IS21 helper
ORF sequence :
MRHDPASAAIVIMLRELKMHGMAHAVAELAEQGSPAFESAQPVLSQLLKAETAEREVRSVAYQLKLARFPVYRDLAGFDFAHSEVNEALVRQLHRCEFME
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQSRKKEKTKNLSTP
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQSRKKEKTKNLSTP
Blast result :
Comments
ISVasp1 is 97% (transposase) and 98% (IS21 helper) aa similar to ISPpn1.
References