ISVapa4

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001635 ND Variovorax paradoxus
Variovorax paradoxus S110
DNA section
IS Length : 2624 bp

Ends


IR Length : 20/27

IRL : TGTTGGCGCCGACCGGAAACTGAGCCAGTTTTGTAGGTAGTGCCGAAGTA
IRR : TGTCCGCGCCGAAGTAGAACTGAGCCACCGCGCCGCTTGAATCGTGAGCC

Insertion site


Left flankDirect repeatRight flankDR Length
tgcagtcgacgccccggtgt0

DNA sequence

TGTTGGCGCCGACCGGAAACTGAGCCAGTTTTGTAGGTAGTGCCGAAGTAAAAGTGAGCCAGGTGTTCAACCTACCCTGCTGTTTATTTAAGCAGCGGGG
TTCGAGGAGTGATCACCATGGACATGATTGGCAGGATCCGACGGCTGCACGCGAGGGACAAGCTGTCGGAGCGCGAGATAGCGCGCATGACAGGGCTGTC
GCGCAACACGGTGTCAAAGTGGCTGCGCGCACCGGCAGCCGAGGCGCCGAAGTACCGGCGCGAAGCAAGGCCGAACAAGCTGAGTGCATTCGAGACAGCG
CTGAAGCAGGCATTGACGGCCGATGCGCGACGGCCCAAGCACGAGCGGCGCACGGCACGCGCGCTGCACGCTGAGATCAAGGCGGCGGGCTACGACGGCG
GGTACTCGGCCATCACTGACTTCGTTCGAGCGTGGCGCCAAGGCGAGGGACAGGCAGTCAACGTCACCGCGTTCGTTCCACTGACCTTCGAGCTCGGCGA
GGCCTTCCAGTTCGATTGGAGCGAAGAAGGCCTGGTCGTCGGCGGCATCTATTACCGCATGCAGGTGTCGCACCTGAAGCTGTGCGCGAGCCGTGCGTTC
TGGCTGGTGGCGTACCCGAGCCAAGGTCACGAGATGCTGTTCGACGCCCACACGAGGTCGTTTGCAGCGCTGGGTGGTGTGGCGCGCCGCGGGATCTACG
ACAACATGCGCACCGCCGTCGATAAGGTTCACAAGGGTAAGGGTCGCACCGTCAATGCCCGCTTCGCCGTGATGTGCGCGCACTACCTGTACGACCCCGA
CTTCTGCAACGTCGCCTCGGGCTGGGAGAAGGGGCGCGTGGAGAAGAACGTACAGGACAGCCGTCGGCGCATCTGGATCGAGGCGGGCCGGCGCCGCTTC
GGCTCCTTCGTCGAACTCAATGCCTGGTTGGCGGAGCGATGCCGAGCGCTGTGGAACGAGGTGCGCCACCCCGAGCACAGCCAGTTCAGCGTGGCCGAGA
TGCTCGAGCACGAGCGTCCCCACCTGATGCCCATGCCTGAGCCCTTCGATGGCTACGTAGAGAAGCCTGCCCGGGTGTCGAGCACGTGCCTGGTGTCGGT
GGCACGTAACCGCTACTCGGTGCCCTGCGAGCTGGCCGGGCAGATGGTCAGCACGCGGCTGTATCCGGGCGGCATCGTGGTTGTTGCCGATGATGCGGTG
GTTGCGCGACACGAGCGCCTGAGCGCCTCTGGCGGCACCCGCTACGACTGGCAGCACTACATTCCGCTCATCCAGCGCAAGCCTGGTGCATTGAGGAACG
GTGCGCCCTTCGCAGACATGCCCGAGGCACTGCAGCAACTGCGCCGCGGCCTGCTGCGCCAGGCCGGTGGAGATCGCGTGATGGCGCAGGTGTTGGCCAT
CGTGCCGACGGCGGGGCTGGACGCGGTGATCGTGGCGGTCGAGTTGGCGCTGCAGAGTGGTCCGCCATCGGGTCGGGTCAGCGTGGAGCACGTCGTCAAC
GTCCTCGGGCGGCTCACCGCACCGGCAGCACCGCAGAGTGCGCAGACGGCGCTGCAGATCGTCACGCCGCCGCTGGCCAACACGGCCCGATACGACGGCT
TGCGTGGACAGGAGGTGGACCATGCGTGACGTGACAGTCGAACTCAAGGCGTTGCGCCTGCACGGCATGGCCAGTGCCTGGTGCGATCTGGCGGAGCAAG
GTGCCGCGTCCGGCTTGGATGCCTCTCGCTGGCTGGTCGAGCACCTGCTGCAGGCGGAGACCACGGACCGTTCGATGCGTTCGGTCCAGCACCAGATGAA
CTCGGCGCGCTTCCCCGTGCACCGGGATCTGGCCGGCTTCGACTTCGATGCGTCGGTGGTCGACCAGAAGCTGGTCCACCAGCTCGCGACGCTGGAGTTC
ACGGAGGCCGCGCACAACGTGGTCTTGGTCGGTGGTCCGGGCACAGGCAAGACCCACCTGGCAACGGCTCTGGGCGTGTCGGGCATCGTGCGCCACAGCA
AGCGCGTGCGGTTCTACTCGACGGTCGATCTGGTCAATGCACTGGAGCAGGAGAAGGCCCAGGGCAAGGCCGGGCGTATTGCGCTGAGCCTGCTGCGAAT
GGATTTGGTGATCCTGGACGAACTGGGCTACTTGCCGTTCAGCCAGGCCGGCGGCGCGCTGCTGTTCCACCTGCTGTCCAAGCTGTACGAGCACACCAGC
GTGGTGATCACCACCAACCTGGACTTCGCCGAATGGTCGACGGTGTTCGGCGACGCGAAGATGACGACCGCCTTGCTCGACCGCCTCACGCACCACTGTC
ACATCGTGGAGACGGGCAACGAGAGCCATCGGTTCCTGCACAGCAGCTCCACCGCGAAGAAGCGCATCAAGGCCAGGGAGCAGACCCGCAAGACAGGCGC
CAAGGCCGATCCAACAGACGCCGTTGATTGACGGCCGTCGCGCGTGACAAGGCGCTACGGGCTTCGCCCTTCGCGCCTTATGAGTTCGATCACAAGAAGC
GAAAGAAGGTCACAGAACAAGGCAAGACATACACTTATCCACAGTCGACCATTGCTGCGTCGGCTTCCACCCCTGGCTCACGATTCAAGCGGCGCGGTGG
CTCAGTTCTACTTCGGCGCGGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1512 bp503 aa1181629+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDMIGRIRRLHARDKLSEREIARMTGLSRNTVSKWLRAPAAEAPKYRREARPNKLSAFETALKQALTADARRPKHERRTARALHAEIKAAGYDGGYSAIT
DFVRAWRQGEGQAVNVTAFVPLTFELGEAFQFDWSEEGLVVGGIYYRMQVSHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMRTA
VDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGRVEKNVQDSRRRIWIEAGRRRFGSFVELNAWLAERCRALWNEVRHPEHSQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGGIVVVADDAVVARHERLSASGGTRYDWQHYIPLIQRKPGALRNGAPFAD
MPEALQQLRRGLLRQAGGDRVMAQVLAIVPTAGLDAVIVAVELALQSGPPSGRVSVEHVVNVLGRLTAPAAPQSAQTALQIVTPPLANTARYDGLRGQEV
DHA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
810 bp254 aa16222431+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRDVTVELKALRLHGMASAWCDLAEQGAASGLDASRWLVEHLLQAETTDRSMRSVQHQMNSARFPVHRDLAGFDFDASVVDQKLVHQLATLEFTEAAHNV
VLVGGPGTGKTHLATALGVSGIVRHSKRVRFYSTVDLVNALEQEKAQGKAGRIALSLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNL
DFAEWSTVFGDAKMTTALLDRLTHHCHIVETGNESHRFLHSSSTAKKRIKAREQTRKTGAKADPTDAVD

 

Blast result :
Comments
ISVapa4 is 96% (transposase) and 94% (IS21 helper) aa similar to ISVapa2.
References