ISVapa4
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001635 | ND | Variovorax paradoxus | Variovorax paradoxus S110 |
DNA section
IS Length : 2624 bp
Ends
IR Length : 20/27
IRL : TGTTGGCGCCGACCGGAAACTGAGCCAGTTTTGTAGGTAGTGCCGAAGTA
IRR : TGTCCGCGCCGAAGTAGAACTGAGCCACCGCGCCGCTTGAATCGTGAGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
tgcagtcgac | gccccggtgt | 0 |
DNA sequence
TGTTGGCGCCGACCGGAAACTGAGCCAGTTTTGTAGGTAGTGCCGAAGTAAAAGTGAGCCAGGTGTTCAACCTACCCTGCTGTTTATTTAAGCAGCGGGG
TTCGAGGAGTGATCACCATGGACATGATTGGCAGGATCCGACGGCTGCACGCGAGGGACAAGCTGTCGGAGCGCGAGATAGCGCGCATGACAGGGCTGTC
GCGCAACACGGTGTCAAAGTGGCTGCGCGCACCGGCAGCCGAGGCGCCGAAGTACCGGCGCGAAGCAAGGCCGAACAAGCTGAGTGCATTCGAGACAGCG
CTGAAGCAGGCATTGACGGCCGATGCGCGACGGCCCAAGCACGAGCGGCGCACGGCACGCGCGCTGCACGCTGAGATCAAGGCGGCGGGCTACGACGGCG
GGTACTCGGCCATCACTGACTTCGTTCGAGCGTGGCGCCAAGGCGAGGGACAGGCAGTCAACGTCACCGCGTTCGTTCCACTGACCTTCGAGCTCGGCGA
GGCCTTCCAGTTCGATTGGAGCGAAGAAGGCCTGGTCGTCGGCGGCATCTATTACCGCATGCAGGTGTCGCACCTGAAGCTGTGCGCGAGCCGTGCGTTC
TGGCTGGTGGCGTACCCGAGCCAAGGTCACGAGATGCTGTTCGACGCCCACACGAGGTCGTTTGCAGCGCTGGGTGGTGTGGCGCGCCGCGGGATCTACG
ACAACATGCGCACCGCCGTCGATAAGGTTCACAAGGGTAAGGGTCGCACCGTCAATGCCCGCTTCGCCGTGATGTGCGCGCACTACCTGTACGACCCCGA
CTTCTGCAACGTCGCCTCGGGCTGGGAGAAGGGGCGCGTGGAGAAGAACGTACAGGACAGCCGTCGGCGCATCTGGATCGAGGCGGGCCGGCGCCGCTTC
GGCTCCTTCGTCGAACTCAATGCCTGGTTGGCGGAGCGATGCCGAGCGCTGTGGAACGAGGTGCGCCACCCCGAGCACAGCCAGTTCAGCGTGGCCGAGA
TGCTCGAGCACGAGCGTCCCCACCTGATGCCCATGCCTGAGCCCTTCGATGGCTACGTAGAGAAGCCTGCCCGGGTGTCGAGCACGTGCCTGGTGTCGGT
GGCACGTAACCGCTACTCGGTGCCCTGCGAGCTGGCCGGGCAGATGGTCAGCACGCGGCTGTATCCGGGCGGCATCGTGGTTGTTGCCGATGATGCGGTG
GTTGCGCGACACGAGCGCCTGAGCGCCTCTGGCGGCACCCGCTACGACTGGCAGCACTACATTCCGCTCATCCAGCGCAAGCCTGGTGCATTGAGGAACG
GTGCGCCCTTCGCAGACATGCCCGAGGCACTGCAGCAACTGCGCCGCGGCCTGCTGCGCCAGGCCGGTGGAGATCGCGTGATGGCGCAGGTGTTGGCCAT
CGTGCCGACGGCGGGGCTGGACGCGGTGATCGTGGCGGTCGAGTTGGCGCTGCAGAGTGGTCCGCCATCGGGTCGGGTCAGCGTGGAGCACGTCGTCAAC
GTCCTCGGGCGGCTCACCGCACCGGCAGCACCGCAGAGTGCGCAGACGGCGCTGCAGATCGTCACGCCGCCGCTGGCCAACACGGCCCGATACGACGGCT
TGCGTGGACAGGAGGTGGACCATGCGTGACGTGACAGTCGAACTCAAGGCGTTGCGCCTGCACGGCATGGCCAGTGCCTGGTGCGATCTGGCGGAGCAAG
GTGCCGCGTCCGGCTTGGATGCCTCTCGCTGGCTGGTCGAGCACCTGCTGCAGGCGGAGACCACGGACCGTTCGATGCGTTCGGTCCAGCACCAGATGAA
CTCGGCGCGCTTCCCCGTGCACCGGGATCTGGCCGGCTTCGACTTCGATGCGTCGGTGGTCGACCAGAAGCTGGTCCACCAGCTCGCGACGCTGGAGTTC
ACGGAGGCCGCGCACAACGTGGTCTTGGTCGGTGGTCCGGGCACAGGCAAGACCCACCTGGCAACGGCTCTGGGCGTGTCGGGCATCGTGCGCCACAGCA
AGCGCGTGCGGTTCTACTCGACGGTCGATCTGGTCAATGCACTGGAGCAGGAGAAGGCCCAGGGCAAGGCCGGGCGTATTGCGCTGAGCCTGCTGCGAAT
GGATTTGGTGATCCTGGACGAACTGGGCTACTTGCCGTTCAGCCAGGCCGGCGGCGCGCTGCTGTTCCACCTGCTGTCCAAGCTGTACGAGCACACCAGC
GTGGTGATCACCACCAACCTGGACTTCGCCGAATGGTCGACGGTGTTCGGCGACGCGAAGATGACGACCGCCTTGCTCGACCGCCTCACGCACCACTGTC
ACATCGTGGAGACGGGCAACGAGAGCCATCGGTTCCTGCACAGCAGCTCCACCGCGAAGAAGCGCATCAAGGCCAGGGAGCAGACCCGCAAGACAGGCGC
CAAGGCCGATCCAACAGACGCCGTTGATTGACGGCCGTCGCGCGTGACAAGGCGCTACGGGCTTCGCCCTTCGCGCCTTATGAGTTCGATCACAAGAAGC
GAAAGAAGGTCACAGAACAAGGCAAGACATACACTTATCCACAGTCGACCATTGCTGCGTCGGCTTCCACCCCTGGCTCACGATTCAAGCGGCGCGGTGG
CTCAGTTCTACTTCGGCGCGGACA
TTCGAGGAGTGATCACCATGGACATGATTGGCAGGATCCGACGGCTGCACGCGAGGGACAAGCTGTCGGAGCGCGAGATAGCGCGCATGACAGGGCTGTC
GCGCAACACGGTGTCAAAGTGGCTGCGCGCACCGGCAGCCGAGGCGCCGAAGTACCGGCGCGAAGCAAGGCCGAACAAGCTGAGTGCATTCGAGACAGCG
CTGAAGCAGGCATTGACGGCCGATGCGCGACGGCCCAAGCACGAGCGGCGCACGGCACGCGCGCTGCACGCTGAGATCAAGGCGGCGGGCTACGACGGCG
GGTACTCGGCCATCACTGACTTCGTTCGAGCGTGGCGCCAAGGCGAGGGACAGGCAGTCAACGTCACCGCGTTCGTTCCACTGACCTTCGAGCTCGGCGA
GGCCTTCCAGTTCGATTGGAGCGAAGAAGGCCTGGTCGTCGGCGGCATCTATTACCGCATGCAGGTGTCGCACCTGAAGCTGTGCGCGAGCCGTGCGTTC
TGGCTGGTGGCGTACCCGAGCCAAGGTCACGAGATGCTGTTCGACGCCCACACGAGGTCGTTTGCAGCGCTGGGTGGTGTGGCGCGCCGCGGGATCTACG
ACAACATGCGCACCGCCGTCGATAAGGTTCACAAGGGTAAGGGTCGCACCGTCAATGCCCGCTTCGCCGTGATGTGCGCGCACTACCTGTACGACCCCGA
CTTCTGCAACGTCGCCTCGGGCTGGGAGAAGGGGCGCGTGGAGAAGAACGTACAGGACAGCCGTCGGCGCATCTGGATCGAGGCGGGCCGGCGCCGCTTC
GGCTCCTTCGTCGAACTCAATGCCTGGTTGGCGGAGCGATGCCGAGCGCTGTGGAACGAGGTGCGCCACCCCGAGCACAGCCAGTTCAGCGTGGCCGAGA
TGCTCGAGCACGAGCGTCCCCACCTGATGCCCATGCCTGAGCCCTTCGATGGCTACGTAGAGAAGCCTGCCCGGGTGTCGAGCACGTGCCTGGTGTCGGT
GGCACGTAACCGCTACTCGGTGCCCTGCGAGCTGGCCGGGCAGATGGTCAGCACGCGGCTGTATCCGGGCGGCATCGTGGTTGTTGCCGATGATGCGGTG
GTTGCGCGACACGAGCGCCTGAGCGCCTCTGGCGGCACCCGCTACGACTGGCAGCACTACATTCCGCTCATCCAGCGCAAGCCTGGTGCATTGAGGAACG
GTGCGCCCTTCGCAGACATGCCCGAGGCACTGCAGCAACTGCGCCGCGGCCTGCTGCGCCAGGCCGGTGGAGATCGCGTGATGGCGCAGGTGTTGGCCAT
CGTGCCGACGGCGGGGCTGGACGCGGTGATCGTGGCGGTCGAGTTGGCGCTGCAGAGTGGTCCGCCATCGGGTCGGGTCAGCGTGGAGCACGTCGTCAAC
GTCCTCGGGCGGCTCACCGCACCGGCAGCACCGCAGAGTGCGCAGACGGCGCTGCAGATCGTCACGCCGCCGCTGGCCAACACGGCCCGATACGACGGCT
TGCGTGGACAGGAGGTGGACCATGCGTGACGTGACAGTCGAACTCAAGGCGTTGCGCCTGCACGGCATGGCCAGTGCCTGGTGCGATCTGGCGGAGCAAG
GTGCCGCGTCCGGCTTGGATGCCTCTCGCTGGCTGGTCGAGCACCTGCTGCAGGCGGAGACCACGGACCGTTCGATGCGTTCGGTCCAGCACCAGATGAA
CTCGGCGCGCTTCCCCGTGCACCGGGATCTGGCCGGCTTCGACTTCGATGCGTCGGTGGTCGACCAGAAGCTGGTCCACCAGCTCGCGACGCTGGAGTTC
ACGGAGGCCGCGCACAACGTGGTCTTGGTCGGTGGTCCGGGCACAGGCAAGACCCACCTGGCAACGGCTCTGGGCGTGTCGGGCATCGTGCGCCACAGCA
AGCGCGTGCGGTTCTACTCGACGGTCGATCTGGTCAATGCACTGGAGCAGGAGAAGGCCCAGGGCAAGGCCGGGCGTATTGCGCTGAGCCTGCTGCGAAT
GGATTTGGTGATCCTGGACGAACTGGGCTACTTGCCGTTCAGCCAGGCCGGCGGCGCGCTGCTGTTCCACCTGCTGTCCAAGCTGTACGAGCACACCAGC
GTGGTGATCACCACCAACCTGGACTTCGCCGAATGGTCGACGGTGTTCGGCGACGCGAAGATGACGACCGCCTTGCTCGACCGCCTCACGCACCACTGTC
ACATCGTGGAGACGGGCAACGAGAGCCATCGGTTCCTGCACAGCAGCTCCACCGCGAAGAAGCGCATCAAGGCCAGGGAGCAGACCCGCAAGACAGGCGC
CAAGGCCGATCCAACAGACGCCGTTGATTGACGGCCGTCGCGCGTGACAAGGCGCTACGGGCTTCGCCCTTCGCGCCTTATGAGTTCGATCACAAGAAGC
GAAAGAAGGTCACAGAACAAGGCAAGACATACACTTATCCACAGTCGACCATTGCTGCGTCGGCTTCCACCCCTGGCTCACGATTCAAGCGGCGCGGTGG
CTCAGTTCTACTTCGGCGCGGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1512 bp | 503 aa | 118 | 1629 | + | No |
Chemistry : DDE
ORF sequence :
MDMIGRIRRLHARDKLSEREIARMTGLSRNTVSKWLRAPAAEAPKYRREARPNKLSAFETALKQALTADARRPKHERRTARALHAEIKAAGYDGGYSAIT
DFVRAWRQGEGQAVNVTAFVPLTFELGEAFQFDWSEEGLVVGGIYYRMQVSHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMRTA
VDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGRVEKNVQDSRRRIWIEAGRRRFGSFVELNAWLAERCRALWNEVRHPEHSQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGGIVVVADDAVVARHERLSASGGTRYDWQHYIPLIQRKPGALRNGAPFAD
MPEALQQLRRGLLRQAGGDRVMAQVLAIVPTAGLDAVIVAVELALQSGPPSGRVSVEHVVNVLGRLTAPAAPQSAQTALQIVTPPLANTARYDGLRGQEV
DHA
DFVRAWRQGEGQAVNVTAFVPLTFELGEAFQFDWSEEGLVVGGIYYRMQVSHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMRTA
VDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGRVEKNVQDSRRRIWIEAGRRRFGSFVELNAWLAERCRALWNEVRHPEHSQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGGIVVVADDAVVARHERLSASGGTRYDWQHYIPLIQRKPGALRNGAPFAD
MPEALQQLRRGLLRQAGGDRVMAQVLAIVPTAGLDAVIVAVELALQSGPPSGRVSVEHVVNVLGRLTAPAAPQSAQTALQIVTPPLANTARYDGLRGQEV
DHA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
810 bp | 254 aa | 1622 | 2431 | + | No |
AG : IS21 helper
ORF sequence :
MRDVTVELKALRLHGMASAWCDLAEQGAASGLDASRWLVEHLLQAETTDRSMRSVQHQMNSARFPVHRDLAGFDFDASVVDQKLVHQLATLEFTEAAHNV
VLVGGPGTGKTHLATALGVSGIVRHSKRVRFYSTVDLVNALEQEKAQGKAGRIALSLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNL
DFAEWSTVFGDAKMTTALLDRLTHHCHIVETGNESHRFLHSSSTAKKRIKAREQTRKTGAKADPTDAVD
VLVGGPGTGKTHLATALGVSGIVRHSKRVRFYSTVDLVNALEQEKAQGKAGRIALSLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNL
DFAEWSTVFGDAKMTTALLDRLTHHCHIVETGNESHRFLHSSSTAKKRIKAREQTRKTGAKADPTDAVD
Blast result :
Comments
ISVapa4 is 96% (transposase) and 94% (IS21 helper) aa similar to ISVapa2.
References