ISBaba3

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP012155 ND Bacteroidetes bacterium
Bacteroidetes bacterium UKL13-3
DNA section
IS Length : 994 bp

Ends


IR Length : 26/32

IRL : TAGAATAACTCATATACTTACCCCAAATAAAAAATGTTAGCCAGCAGATA
IRR : TAGAATAACTCATTTAGCTACCCCAGTAAAAATTTAACAGTTTAATTGGA

Insertion site


Left flankDirect repeatRight flankDR Length
GCCAGTAGTTATCCTTATAATACCTATAAGGTTTGT0
GAAAAAGAATAAACCAATAAGTTGAATAGGGAAATC0

DNA sequence

TAGAATAACTCATATACTTACCCCAAATAAAAAATGTTAGCCAGCAGATAGGCTGCGGATTGAAGAAAGAACTTTGAATAAAAATAACAGATTATGTTCA
CAGGGTATGACATTTTAGACTTTGTTCGCACATATTGCGAAGAGTCGATTTGCCAAGAATATTTGGCGAATGCGAAATGGGGAAACGGTTTTAGATGTGT
AAAATGTGGGAACACAAGTTGGAGCAGGTTGGCTGAAACCTATAACCGTAAATGCAATAAGTGCAAACATATTGAGTCGCCTACATCGGGAACACTCTTC
CACAAAGTGAAATTCCCCCTTACTAAAGCTTTTCTATTTGTGTTTTTAGTAAGCACAAGTAAGAAAGGAATAAGTAGCTATGAGTTGGCTCGCAAATTGA
GTTTACAACAAACTACCTGTTACTTTTTTAGCAGAAAAATAATGAAGGCGATGAATATTAAAGAGCCTAAACTTTTGGATGGCAAAGTGGATGTAGATGA
GTTTTTTGTAGGAGGTCCTGAAACGGGTAAACCCGGCAGAAGTAAAGGAAAGAAGAAACAAGTAGTGATGGTAATACAAATGAAGAAAAAGGGAATTGTA
CGATGTTATGCCAACCAAATACCTAGTGCTGGAACGAAACAATTGAAGCCGTTTTTTCAAAAGTATATAAGCAAGGAAGCATTAATAAGGACTGATAAAT
GGCGAGGTTACAGACCTTTGAAATACTTATTTACATGGCTAAAACAGGAGGTGTCGGTGCCTAAAAACAACTTCAGGTTATTTCATAGGCAAGTAATGAT
GCTCAAGGCCTGGTTAAGAGGAATCCATCACCAAGCAAAACATTTACAACCGTACCTTGATGAGTTTACTTGGAGATTTAACAATAGAAACAATCCTAAC
TTTTTCGATATTTTGATATCTTCGATGATGAAAGAAAAAGCGACTCCAATTAAACTGTTAAATTTTTACTGGGGTAGCTAAATGAGTTATTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
888 bp295 aa94981+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFTGYDILDFVRTYCEESICQEYLANAKWGNGFRCVKCGNTSWSRLAETYNRKCNKCKHIESPTSGTLFHKVKFPLTKAFLFVFLVSTSKKGISSYELAR
KLSLQQTTCYFFSRKIMKAMNIKEPKLLDGKVDVDEFFVGGPETGKPGRSKGKKKQVVMVIQMKKKGIVRCYANQIPSAGTKQLKPFFQKYISKEALIRT
DKWRGYRPLKYLFTWLKQEVSVPKNNFRLFHRQVMMLKAWLRGIHHQAKHLQPYLDEFTWRFNNRNNPNFFDILISSMMKEKATPIKLLNFYWGS

 

Blast result :
Comments
ISBaba3 is 63% aa similar to ISBasa1.
References
1] ISfinder annotation (2016)
2] Driscoll,C.B. (2015) Direct GenBank submission.