ISBaba3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP012155 | ND | Bacteroidetes bacterium | Bacteroidetes bacterium UKL13-3 |
DNA section
IS Length : 994 bp
Ends
IR Length : 26/32
IRL : TAGAATAACTCATATACTTACCCCAAATAAAAAATGTTAGCCAGCAGATA
IRR : TAGAATAACTCATTTAGCTACCCCAGTAAAAATTTAACAGTTTAATTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCAGTAGTTATCCTTA | TAATACCTATAAGGTTTGT | 0 | |
GAAAAAGAATAAACCAA | TAAGTTGAATAGGGAAATC | 0 |
DNA sequence
TAGAATAACTCATATACTTACCCCAAATAAAAAATGTTAGCCAGCAGATAGGCTGCGGATTGAAGAAAGAACTTTGAATAAAAATAACAGATTATGTTCA
CAGGGTATGACATTTTAGACTTTGTTCGCACATATTGCGAAGAGTCGATTTGCCAAGAATATTTGGCGAATGCGAAATGGGGAAACGGTTTTAGATGTGT
AAAATGTGGGAACACAAGTTGGAGCAGGTTGGCTGAAACCTATAACCGTAAATGCAATAAGTGCAAACATATTGAGTCGCCTACATCGGGAACACTCTTC
CACAAAGTGAAATTCCCCCTTACTAAAGCTTTTCTATTTGTGTTTTTAGTAAGCACAAGTAAGAAAGGAATAAGTAGCTATGAGTTGGCTCGCAAATTGA
GTTTACAACAAACTACCTGTTACTTTTTTAGCAGAAAAATAATGAAGGCGATGAATATTAAAGAGCCTAAACTTTTGGATGGCAAAGTGGATGTAGATGA
GTTTTTTGTAGGAGGTCCTGAAACGGGTAAACCCGGCAGAAGTAAAGGAAAGAAGAAACAAGTAGTGATGGTAATACAAATGAAGAAAAAGGGAATTGTA
CGATGTTATGCCAACCAAATACCTAGTGCTGGAACGAAACAATTGAAGCCGTTTTTTCAAAAGTATATAAGCAAGGAAGCATTAATAAGGACTGATAAAT
GGCGAGGTTACAGACCTTTGAAATACTTATTTACATGGCTAAAACAGGAGGTGTCGGTGCCTAAAAACAACTTCAGGTTATTTCATAGGCAAGTAATGAT
GCTCAAGGCCTGGTTAAGAGGAATCCATCACCAAGCAAAACATTTACAACCGTACCTTGATGAGTTTACTTGGAGATTTAACAATAGAAACAATCCTAAC
TTTTTCGATATTTTGATATCTTCGATGATGAAAGAAAAAGCGACTCCAATTAAACTGTTAAATTTTTACTGGGGTAGCTAAATGAGTTATTCTA
CAGGGTATGACATTTTAGACTTTGTTCGCACATATTGCGAAGAGTCGATTTGCCAAGAATATTTGGCGAATGCGAAATGGGGAAACGGTTTTAGATGTGT
AAAATGTGGGAACACAAGTTGGAGCAGGTTGGCTGAAACCTATAACCGTAAATGCAATAAGTGCAAACATATTGAGTCGCCTACATCGGGAACACTCTTC
CACAAAGTGAAATTCCCCCTTACTAAAGCTTTTCTATTTGTGTTTTTAGTAAGCACAAGTAAGAAAGGAATAAGTAGCTATGAGTTGGCTCGCAAATTGA
GTTTACAACAAACTACCTGTTACTTTTTTAGCAGAAAAATAATGAAGGCGATGAATATTAAAGAGCCTAAACTTTTGGATGGCAAAGTGGATGTAGATGA
GTTTTTTGTAGGAGGTCCTGAAACGGGTAAACCCGGCAGAAGTAAAGGAAAGAAGAAACAAGTAGTGATGGTAATACAAATGAAGAAAAAGGGAATTGTA
CGATGTTATGCCAACCAAATACCTAGTGCTGGAACGAAACAATTGAAGCCGTTTTTTCAAAAGTATATAAGCAAGGAAGCATTAATAAGGACTGATAAAT
GGCGAGGTTACAGACCTTTGAAATACTTATTTACATGGCTAAAACAGGAGGTGTCGGTGCCTAAAAACAACTTCAGGTTATTTCATAGGCAAGTAATGAT
GCTCAAGGCCTGGTTAAGAGGAATCCATCACCAAGCAAAACATTTACAACCGTACCTTGATGAGTTTACTTGGAGATTTAACAATAGAAACAATCCTAAC
TTTTTCGATATTTTGATATCTTCGATGATGAAAGAAAAAGCGACTCCAATTAAACTGTTAAATTTTTACTGGGGTAGCTAAATGAGTTATTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
888 bp | 295 aa | 94 | 981 | + | No |
Chemistry : DDE
ORF sequence :
MFTGYDILDFVRTYCEESICQEYLANAKWGNGFRCVKCGNTSWSRLAETYNRKCNKCKHIESPTSGTLFHKVKFPLTKAFLFVFLVSTSKKGISSYELAR
KLSLQQTTCYFFSRKIMKAMNIKEPKLLDGKVDVDEFFVGGPETGKPGRSKGKKKQVVMVIQMKKKGIVRCYANQIPSAGTKQLKPFFQKYISKEALIRT
DKWRGYRPLKYLFTWLKQEVSVPKNNFRLFHRQVMMLKAWLRGIHHQAKHLQPYLDEFTWRFNNRNNPNFFDILISSMMKEKATPIKLLNFYWGS
KLSLQQTTCYFFSRKIMKAMNIKEPKLLDGKVDVDEFFVGGPETGKPGRSKGKKKQVVMVIQMKKKGIVRCYANQIPSAGTKQLKPFFQKYISKEALIRT
DKWRGYRPLKYLFTWLKQEVSVPKNNFRLFHRQVMMLKAWLRGIHHQAKHLQPYLDEFTWRFNNRNNPNFFDILISSMMKEKATPIKLLNFYWGS
Blast result :
Comments
ISBaba3 is 63% aa similar to ISBasa1.
References
1] ISfinder annotation (2016)
2] Driscoll,C.B. (2015) Direct GenBank submission.
2] Driscoll,C.B. (2015) Direct GenBank submission.