ISSwe1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FOZZ01000002 | ND | Sphingobacterium wenxiniae | Sphingobacterium wenxiniae DSM 22789 |
DNA section
IS Length : 944 bp
Ends
IR Length : 20/25
IRL : TAGAGTTATTCATTTAACTACGTATATTTGAGCTATGGATATTTTCAAAG
IRR : TAGAGCTATTCACTTAGTTACTTATTATAATATCACTATAAGTCAGATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGAATACTT | AAAACTTT/AT | TTTATTAGAGA | 9 |
DNA sequence
TAGAGTTATTCATTTAACTACGTATATTTGAGCTATGGATATTTTCAAAGGTGAGAGCATAGTCAGTTTTTTTGACCGTTTCAAGAGTGATGCGGATTGT
CTTTGTTATTTGGCAGACCGTAAAGCTTCTATGGGATACAGTTGTTTAAAATGTGGTCATACCAAATATACGGTCCGCAAGAAGAATTTGGCCAGGGACT
GCAACAAGTGCCATCATTTGGAAAGCCCAACCGCAGGTACGCTTTTCCATAAGGTTAAGTTTGGACTTCGCAAAGCCTTCGGTATGGTTTTCGAGATGAG
CGCTACGACCAAAAGTATCTCCGCCAACCAGATGAGCACGCGCTATGAGGTTCGTTATGTGACTGCTTGGCTGTTTATGCAAAAAGTCCGCAAAGCAATG
AAAAGCAGTGGTAAAGACCCTATGGAAGGGGATGTTATCGTTGATGAATTTGTTTTTGGTGGCCGTGAAGCCCTCAAGCAGGGCCGAAGCACGGATAGTA
AGAAAAAGAAAATCGTTGCCGCCGTTCAGAAAGATGATACGGGTATTAAGCGGGTCTACTTCAAGCCGATCGAGGATTACAGTTCGTCCTCGTTGAGAGT
CATCTTCGATGCGCACATTTCACAGCATGCCCGGGTCAAGACCGATAAGTGGACAGGTTATAAGCCGTTGAAGAAGGAATACAATATCAGCCAGACAAAG
AGTGATAAAGGGAGAACTTTCTTCGAGATGAACACCATTGTGCATCAGCTAAAAGCGTGGATGAGATCTAACTTTTCCAATATACACAAACATCATATAC
AAGCGTATTTGGATGAGTTCAGCTATAGGATAAACAGGTCAATACACAAGCAAACCATTTTTGACAACCTGATTTCAAGTATGGTAAAGCATAAAAATCT
GACTTATAGTGATATTATAATAAGTAACTAAGTGAATAGCTCTA
CTTTGTTATTTGGCAGACCGTAAAGCTTCTATGGGATACAGTTGTTTAAAATGTGGTCATACCAAATATACGGTCCGCAAGAAGAATTTGGCCAGGGACT
GCAACAAGTGCCATCATTTGGAAAGCCCAACCGCAGGTACGCTTTTCCATAAGGTTAAGTTTGGACTTCGCAAAGCCTTCGGTATGGTTTTCGAGATGAG
CGCTACGACCAAAAGTATCTCCGCCAACCAGATGAGCACGCGCTATGAGGTTCGTTATGTGACTGCTTGGCTGTTTATGCAAAAAGTCCGCAAAGCAATG
AAAAGCAGTGGTAAAGACCCTATGGAAGGGGATGTTATCGTTGATGAATTTGTTTTTGGTGGCCGTGAAGCCCTCAAGCAGGGCCGAAGCACGGATAGTA
AGAAAAAGAAAATCGTTGCCGCCGTTCAGAAAGATGATACGGGTATTAAGCGGGTCTACTTCAAGCCGATCGAGGATTACAGTTCGTCCTCGTTGAGAGT
CATCTTCGATGCGCACATTTCACAGCATGCCCGGGTCAAGACCGATAAGTGGACAGGTTATAAGCCGTTGAAGAAGGAATACAATATCAGCCAGACAAAG
AGTGATAAAGGGAGAACTTTCTTCGAGATGAACACCATTGTGCATCAGCTAAAAGCGTGGATGAGATCTAACTTTTCCAATATACACAAACATCATATAC
AAGCGTATTTGGATGAGTTCAGCTATAGGATAAACAGGTCAATACACAAGCAAACCATTTTTGACAACCTGATTTCAAGTATGGTAAAGCATAAAAATCT
GACTTATAGTGATATTATAATAAGTAACTAAGTGAATAGCTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
897 bp | 298 aa | 35 | 931 | + | No |
Chemistry : DDE
ORF sequence :
MDIFKGESIVSFFDRFKSDADCLCYLADRKASMGYSCLKCGHTKYTVRKKNLARDCNKCHHLESPTAGTLFHKVKFGLRKAFGMVFEMSATTKSISANQM
STRYEVRYVTAWLFMQKVRKAMKSSGKDPMEGDVIVDEFVFGGREALKQGRSTDSKKKKIVAAVQKDDTGIKRVYFKPIEDYSSSSLRVIFDAHISQHAR
VKTDKWTGYKPLKKEYNISQTKSDKGRTFFEMNTIVHQLKAWMRSNFSNIHKHHIQAYLDEFSYRINRSIHKQTIFDNLISSMVKHKNLTYSDIIISN
STRYEVRYVTAWLFMQKVRKAMKSSGKDPMEGDVIVDEFVFGGREALKQGRSTDSKKKKIVAAVQKDDTGIKRVYFKPIEDYSSSSLRVIFDAHISQHAR
VKTDKWTGYKPLKKEYNISQTKSDKGRTFFEMNTIVHQLKAWMRSNFSNIHKHHIQAYLDEFSYRINRSIHKQTIFDNLISSMVKHKNLTYSDIIISN
Blast result :
Comments
ISSwe1 is 81% aa similar to ISFbr1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.