ISSwe1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOZZ01000002 ND Sphingobacterium wenxiniae
Sphingobacterium wenxiniae DSM 22789
DNA section
IS Length : 944 bp

Ends


IR Length : 20/25

IRL : TAGAGTTATTCATTTAACTACGTATATTTGAGCTATGGATATTTTCAAAG
IRR : TAGAGCTATTCACTTAGTTACTTATTATAATATCACTATAAGTCAGATTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGAATACTTAAAACTTT/ATTTTATTAGAGA9

DNA sequence

TAGAGTTATTCATTTAACTACGTATATTTGAGCTATGGATATTTTCAAAGGTGAGAGCATAGTCAGTTTTTTTGACCGTTTCAAGAGTGATGCGGATTGT
CTTTGTTATTTGGCAGACCGTAAAGCTTCTATGGGATACAGTTGTTTAAAATGTGGTCATACCAAATATACGGTCCGCAAGAAGAATTTGGCCAGGGACT
GCAACAAGTGCCATCATTTGGAAAGCCCAACCGCAGGTACGCTTTTCCATAAGGTTAAGTTTGGACTTCGCAAAGCCTTCGGTATGGTTTTCGAGATGAG
CGCTACGACCAAAAGTATCTCCGCCAACCAGATGAGCACGCGCTATGAGGTTCGTTATGTGACTGCTTGGCTGTTTATGCAAAAAGTCCGCAAAGCAATG
AAAAGCAGTGGTAAAGACCCTATGGAAGGGGATGTTATCGTTGATGAATTTGTTTTTGGTGGCCGTGAAGCCCTCAAGCAGGGCCGAAGCACGGATAGTA
AGAAAAAGAAAATCGTTGCCGCCGTTCAGAAAGATGATACGGGTATTAAGCGGGTCTACTTCAAGCCGATCGAGGATTACAGTTCGTCCTCGTTGAGAGT
CATCTTCGATGCGCACATTTCACAGCATGCCCGGGTCAAGACCGATAAGTGGACAGGTTATAAGCCGTTGAAGAAGGAATACAATATCAGCCAGACAAAG
AGTGATAAAGGGAGAACTTTCTTCGAGATGAACACCATTGTGCATCAGCTAAAAGCGTGGATGAGATCTAACTTTTCCAATATACACAAACATCATATAC
AAGCGTATTTGGATGAGTTCAGCTATAGGATAAACAGGTCAATACACAAGCAAACCATTTTTGACAACCTGATTTCAAGTATGGTAAAGCATAAAAATCT
GACTTATAGTGATATTATAATAAGTAACTAAGTGAATAGCTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
897 bp298 aa35931+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIFKGESIVSFFDRFKSDADCLCYLADRKASMGYSCLKCGHTKYTVRKKNLARDCNKCHHLESPTAGTLFHKVKFGLRKAFGMVFEMSATTKSISANQM
STRYEVRYVTAWLFMQKVRKAMKSSGKDPMEGDVIVDEFVFGGREALKQGRSTDSKKKKIVAAVQKDDTGIKRVYFKPIEDYSSSSLRVIFDAHISQHAR
VKTDKWTGYKPLKKEYNISQTKSDKGRTFFEMNTIVHQLKAWMRSNFSNIHKHHIQAYLDEFSYRINRSIHKQTIFDNLISSMVKHKNLTYSDIIISN

 

Blast result :
Comments
ISSwe1 is 81% aa similar to ISFbr1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.