ISPpu27
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP005976 | ND | Pseudomonas putida | Pseudomonas putida H8234 Pseudomonas mandelii LMG 21607 |
DNA section
IS Length : 2581 bp
Ends
IR Length : 23/27
IRL : tgttgccgctgaccgaaaactgacccagtaaaggctgttctgccgactga
IRR : tgtcggcgctgattgaaaactgacccaccctgccgattgaaaactgaccc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAGAAGTGC | CGAT | AGCATCTAGA | 4 |
DNA sequence
TGTTGCCGCTGACCGAAAACTGACCCAGTAAAGGCTGTTCTGCCGACTGAAAACTGACCCAGGTGTTCAACTGCTTCTGCTCACTTTTCGAGCAGGAGAA
CACAGGGTGATCAGCATGGAAATGTTGGGAAAAATCCGGCGGATGTACTTCCGCGACAAGCTCTCGCTGCATCAGATAGCCAAGCGTACCGGACTGTCGA
GAAACACCATTCGAAAATGGGTCAGAGCACCCGAAGCCACCCAGCCGGCGTACCAACGGTGCGCAACCTTCAACAAACTCAGTCCATTTCACGAGACGCT
GGAGCAGGCGCTTAAGGCCGATTCGTTTCGGGCAAAGCACAACCGCAGGAGTGCCAAAGCACTCTTCGAACAGATCAAGGCCGAGGGGTACGACGGCGGC
TACAGCCAACTCACCGCCTTTATACGCTCGTGGCGCGGCGAGCAAGGCAAGTCTTTACGAGCCTTTGTGCCGCTGACCTTTGCACTCGGGGAGGCCTTTC
AATTCGACTGGAGCGAAGAAGGTCTGCTGATCGGCGGCCTGTTCCGACGCATCCAGGTCTCCCATATGAAGCTGTGCGCCAGTCGCGCATTTTGGTTGGT
TGCGTATCCCAGCCAAGGCCACGAGATGTTGTTCGATGCCCATACCCGCTCGTTTGGCGCGTTAGGTGGGGTGCCGCGTCGCGGCATCTACGACAACATG
AAGACCGCTGTCGACAAGGTCAACAAGGGTAAGGGCCGCACGGTCAATGCTCGGTTTGCCGTGATGTGTGCGCACTACCTGTTCGACCCGGACTTCTGCA
ACGTCGCTTCCGGCTGGGAAAAAGGCATCGTTGAAAAGAACGTCCAAGACAGCCGACGGCGCATCTGGCTCGATGCTCAAAACTGCATGTTCCACACCTT
CGAGGAATTGAATGCCTGGCTCGGCCAACGCTGCCGTGCGCTCTGGGGCGAACTGCTGCACCCGCAGTACAACGGGCTGACCGTGGCGGACGTCCTGGAG
CTGGAACGCGCTGAATTGATGCCGATGCCGACTGCCTTTGATGGCTACGTCGAGCGCACCGTACGGGTCTCCAGCACCTGCCTAATCAGCGTGGCGCGAA
ATCGCTATTCGGTGCCGTGTGAGCGGGTCGGCCAGTGGGTCAGCAGCCGTTTGTATCCTTCCCGGGTGGTGGTCATCGCCGATGAAACGACGATTGCCAG
CCACGAGCGTCTGTTTGATCGAGATCAGGTCAGTTTTGACTGGCAGCATTACATCCCGCTTATCGAGCGCAAGCCTGGAGCGCTGCGCAATGGCGCTCCG
TTTGCTGATCTGCCGAAGCCGTTGCAGCTGCTAAAACGCGGTCTGAGGCGTCACGCCAATGGTGATCGAGTCATGACGCAGGTACTGGCGGCTGTTCCCA
TCGCCGGGCTCGACGCCATATTGGTGGCTGTGGAGTTGGTACTTGAATCAGGCAGCTTGAGTGCTGAGCACATCCTGAATGTCCTGGCTCGACTGACATC
GACAGCAGCCCCTCCGTCCGCCGAAACCAGCCTTCAACTCAAGATAGCGCCTGTCGCCAATACGGCACGCTACGACCGGCTCCGTACCACCGATGAGGAG
ACTCGCAATGCGTGATCTTATGGCGGAACTCAAAGAACTGCGTCTGCATGGCATGGCCAGCGCCTGGGAAGAACTAGCCTCGCAAGGAGAAGCTTCGACG
GCATCCTCGAAATGGCTACTTGAGCATCTTCTCCAACAAGAACATGCGGATCGAGCGGTGCGCTCAGTGAACCACCAGATGAACATGGCCAAACTCCCCA
TGCATCGTGATTTGGCCGGCTTCGACTTCAGCGCTTCCAGCGCAGATGCCCGCCTGATCAGGGATCTGTCCAACCTGGAGTTCACCGATACCGCGCAGAA
TGTCGTGTTCATCGGCGGGCCTGGAACAGGCAAAACACACCTCGCCACCGCCTTGGCTGTGTCCGGGATCACGACGCATCACAAACGCGTGCGCTTCTAC
TCCACGGTGGATCTGGTCAATCTGCTGGAACGCGAAAAGTACGACGGCAAGACGGGCCGCATCGCTCAAGGGCTGCTACGAACAGACCTGGTGATACTCG
ATGAACTGGGGTATTTGCCCTTCAGCCAGAGCGGTGGTGCCCTGTTATTTCACCTGCTATCCAAGCTGTACGAGCACACCAGCGTGGTGATCACCACCAA
CCTCAGCTTCTCGGAATGGTCGAGCGTGTTTGGTGACGCCAAGATGACAACGGCGTTGCTGGATCGGCTGACACACCACTGCCACATCGTCGAAACGGGC
AACGAGTCCTACCGCCTGCAACACAGCAGCTTGGTCGCCCAGACCAAGATCAAATCACGTGAACGAAAGCGCAAAGGCAATGATGGTGCCGAGGACGATG
AGCTGTTTTGATCTGCACCAAAAATACCCTGCCGCATGCCCACATGCGGTGGGGCTTTAATGCCTCTTCCACCGGGACACGACTGCTAAGCTTATCCACA
ATTGCTGATGCCAAAATCAGCAATCCGCCCTGGGTCAGTTTTCAATCGGCAGGGTGGGTCAGTTTTCAATCAGCGCCGACA
CACAGGGTGATCAGCATGGAAATGTTGGGAAAAATCCGGCGGATGTACTTCCGCGACAAGCTCTCGCTGCATCAGATAGCCAAGCGTACCGGACTGTCGA
GAAACACCATTCGAAAATGGGTCAGAGCACCCGAAGCCACCCAGCCGGCGTACCAACGGTGCGCAACCTTCAACAAACTCAGTCCATTTCACGAGACGCT
GGAGCAGGCGCTTAAGGCCGATTCGTTTCGGGCAAAGCACAACCGCAGGAGTGCCAAAGCACTCTTCGAACAGATCAAGGCCGAGGGGTACGACGGCGGC
TACAGCCAACTCACCGCCTTTATACGCTCGTGGCGCGGCGAGCAAGGCAAGTCTTTACGAGCCTTTGTGCCGCTGACCTTTGCACTCGGGGAGGCCTTTC
AATTCGACTGGAGCGAAGAAGGTCTGCTGATCGGCGGCCTGTTCCGACGCATCCAGGTCTCCCATATGAAGCTGTGCGCCAGTCGCGCATTTTGGTTGGT
TGCGTATCCCAGCCAAGGCCACGAGATGTTGTTCGATGCCCATACCCGCTCGTTTGGCGCGTTAGGTGGGGTGCCGCGTCGCGGCATCTACGACAACATG
AAGACCGCTGTCGACAAGGTCAACAAGGGTAAGGGCCGCACGGTCAATGCTCGGTTTGCCGTGATGTGTGCGCACTACCTGTTCGACCCGGACTTCTGCA
ACGTCGCTTCCGGCTGGGAAAAAGGCATCGTTGAAAAGAACGTCCAAGACAGCCGACGGCGCATCTGGCTCGATGCTCAAAACTGCATGTTCCACACCTT
CGAGGAATTGAATGCCTGGCTCGGCCAACGCTGCCGTGCGCTCTGGGGCGAACTGCTGCACCCGCAGTACAACGGGCTGACCGTGGCGGACGTCCTGGAG
CTGGAACGCGCTGAATTGATGCCGATGCCGACTGCCTTTGATGGCTACGTCGAGCGCACCGTACGGGTCTCCAGCACCTGCCTAATCAGCGTGGCGCGAA
ATCGCTATTCGGTGCCGTGTGAGCGGGTCGGCCAGTGGGTCAGCAGCCGTTTGTATCCTTCCCGGGTGGTGGTCATCGCCGATGAAACGACGATTGCCAG
CCACGAGCGTCTGTTTGATCGAGATCAGGTCAGTTTTGACTGGCAGCATTACATCCCGCTTATCGAGCGCAAGCCTGGAGCGCTGCGCAATGGCGCTCCG
TTTGCTGATCTGCCGAAGCCGTTGCAGCTGCTAAAACGCGGTCTGAGGCGTCACGCCAATGGTGATCGAGTCATGACGCAGGTACTGGCGGCTGTTCCCA
TCGCCGGGCTCGACGCCATATTGGTGGCTGTGGAGTTGGTACTTGAATCAGGCAGCTTGAGTGCTGAGCACATCCTGAATGTCCTGGCTCGACTGACATC
GACAGCAGCCCCTCCGTCCGCCGAAACCAGCCTTCAACTCAAGATAGCGCCTGTCGCCAATACGGCACGCTACGACCGGCTCCGTACCACCGATGAGGAG
ACTCGCAATGCGTGATCTTATGGCGGAACTCAAAGAACTGCGTCTGCATGGCATGGCCAGCGCCTGGGAAGAACTAGCCTCGCAAGGAGAAGCTTCGACG
GCATCCTCGAAATGGCTACTTGAGCATCTTCTCCAACAAGAACATGCGGATCGAGCGGTGCGCTCAGTGAACCACCAGATGAACATGGCCAAACTCCCCA
TGCATCGTGATTTGGCCGGCTTCGACTTCAGCGCTTCCAGCGCAGATGCCCGCCTGATCAGGGATCTGTCCAACCTGGAGTTCACCGATACCGCGCAGAA
TGTCGTGTTCATCGGCGGGCCTGGAACAGGCAAAACACACCTCGCCACCGCCTTGGCTGTGTCCGGGATCACGACGCATCACAAACGCGTGCGCTTCTAC
TCCACGGTGGATCTGGTCAATCTGCTGGAACGCGAAAAGTACGACGGCAAGACGGGCCGCATCGCTCAAGGGCTGCTACGAACAGACCTGGTGATACTCG
ATGAACTGGGGTATTTGCCCTTCAGCCAGAGCGGTGGTGCCCTGTTATTTCACCTGCTATCCAAGCTGTACGAGCACACCAGCGTGGTGATCACCACCAA
CCTCAGCTTCTCGGAATGGTCGAGCGTGTTTGGTGACGCCAAGATGACAACGGCGTTGCTGGATCGGCTGACACACCACTGCCACATCGTCGAAACGGGC
AACGAGTCCTACCGCCTGCAACACAGCAGCTTGGTCGCCCAGACCAAGATCAAATCACGTGAACGAAAGCGCAAAGGCAATGATGGTGCCGAGGACGATG
AGCTGTTTTGATCTGCACCAAAAATACCCTGCCGCATGCCCACATGCGGTGGGGCTTTAATGCCTCTTCCACCGGGACACGACTGCTAAGCTTATCCACA
ATTGCTGATGCCAAAATCAGCAATCCGCCCTGGGTCAGTTTTCAATCGGCAGGGTGGGTCAGTTTTCAATCAGCGCCGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1509 bp | 502 aa | 107 | 1615 | + | No |
Chemistry : DDE
ORF sequence :
MISMEMLGKIRRMYFRDKLSLHQIAKRTGLSRNTIRKWVRAPEATQPAYQRCATFNKLSPFHETLEQALKADSFRAKHNRRSAKALFEQIKAEGYDGGYS
QLTAFIRSWRGEQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRIQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKT
AVDKVNKGKGRTVNARFAVMCAHYLFDPDFCNVASGWEKGIVEKNVQDSRRRIWLDAQNCMFHTFEELNAWLGQRCRALWGELLHPQYNGLTVADVLELE
RAELMPMPTAFDGYVERTVRVSSTCLISVARNRYSVPCERVGQWVSSRLYPSRVVVIADETTIASHERLFDRDQVSFDWQHYIPLIERKPGALRNGAPFA
DLPKPLQLLKRGLRRHANGDRVMTQVLAAVPIAGLDAILVAVELVLESGSLSAEHILNVLARLTSTAAPPSAETSLQLKIAPVANTARYDRLRTTDEETR
NA
QLTAFIRSWRGEQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRIQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKT
AVDKVNKGKGRTVNARFAVMCAHYLFDPDFCNVASGWEKGIVEKNVQDSRRRIWLDAQNCMFHTFEELNAWLGQRCRALWGELLHPQYNGLTVADVLELE
RAELMPMPTAFDGYVERTVRVSSTCLISVARNRYSVPCERVGQWVSSRLYPSRVVVIADETTIASHERLFDRDQVSFDWQHYIPLIERKPGALRNGAPFA
DLPKPLQLLKRGLRRHANGDRVMTQVLAAVPIAGLDAILVAVELVLESGSLSAEHILNVLARLTSTAAPPSAETSLQLKIAPVANTARYDRLRTTDEETR
NA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
804 bp | 267 aa | 1608 | 2411 | + | No |
AG : IS21 helper
ORF sequence :
MRDLMAELKELRLHGMASAWEELASQGEASTASSKWLLEHLLQQEHADRAVRSVNHQMNMAKLPMHRDLAGFDFSASSADARLIRDLSNLEFTDTAQNVV
FIGGPGTGKTHLATALAVSGITTHHKRVRFYSTVDLVNLLEREKYDGKTGRIAQGLLRTDLVILDELGYLPFSQSGGALLFHLLSKLYEHTSVVITTNLS
FSEWSSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSSLVAQTKIKSRERKRKGNDGAEDDELF
FIGGPGTGKTHLATALAVSGITTHHKRVRFYSTVDLVNLLEREKYDGKTGRIAQGLLRTDLVILDELGYLPFSQSGGALLFHLLSKLYEHTSVVITTNLS
FSEWSSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSSLVAQTKIKSRERKRKGNDGAEDDELF
Blast result :
Comments
ISPpu27 is 97% (transposase) and 95% (IS21 helper) aa similar to ISPsy20.
References