ISYru1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009539 | ND | Yersinia ruckeri | Yersinia ruckeri Yersinia ruckeri strain YRB (chromosome) |
DNA section
IS Length : 1954 bp
Ends
IR Length : 20/27bp
IRL : tgtcactaacggtgcgaaagtgatccatatccgacgcctgaaatcagatc
IRR : tgtcaacgacgggtaaaaagtgatccacttacatctccaccgacggtcta
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
tgtcactaacggtgcgaaagtgatccatatccgacgcctgaaatcagatccaggggttaatctgctctcctgattcgggagagcttatggtcacttttga
gacagttatggaaattaaaatcctgcacaagcagggtatgagcagtcgggcgatcgccagagaactgggcatctcccgtaacactgtaaagcgctatctg
cgtgcgcaatctgagccgccaaaatatacgccgcgtcctgcagcatcttcacttctggatgaataccgggactatattcgccaacgcatcgctgatgccc
acccttataaaattccagcaacggttatcgcccgcgaaatcatggaacagggctatcgtggtggtatgaccatcctgagagagttcatacgttcctttgc
catacctcaggagccagagcctgtcgttcgcttcgaaaccgagcccggacggcagatgcaggtcgattgggggaccatgcggaacggcaaatccccgctt
catgtgttcgttgccgttctggggtacagcagaatgctgtacatcgagttcaccgacaatacgcgcttcgacacgctggaaacctgtcaccgtaatgcgt
tcagcttctttggcggcgtgccgcgggaaatactgtacgacaatatgaaaacagtggtactccagcgtgatgcttaccagaccggacagcaccggttcaa
tccttccctgtggcagttcggtaaagagatgggcttctctccccggctgtgccgccccttcagggcacaaaccaaaggcaaggtggagcggatggtgcag
tacacccgtaacagcttctacatcccgctaatgacgcgtctgcgcccgatggggatcaccgtcgatgttgagaccgcaaaccgctacggtctgcgctggc
tgtacgatgtggccaaccaacggaaacatgaaaccatccagatgcgtccctgtgatcgctggatagaggaacagcaatccatgctggcgctgccgccgga
gaaaaaacagtatgatgttcaggtcgacgaaggcctggtgaccttcgacaggcagccactgcaccatccgttgtccatctatgacacgttctgcagagga
gccgcatgatggttgaactgcaacatcaacggctgatggtcctcgccgaacaactgcaactggacagtcttatcagtgccgcgccagccctgtcgcaaca
ggcagtagaccaggaatggagctacatggacttcctggaacatctgctgcatgaagaaaaactggcccggcatcagcgaaaacaggccatgtttacccga
atggcggccttcccggcagtaaaaacgttcgaggaatatgacttcaccttcgccaccggggcaccacaaaaacaactccagtccttacgttcactgagct
tcatcgagcgtaacgaaaacatcgtgttgttggggccatccggcgtggggaaaacacatctggctatagcgatgggctacgaggcggtgcgtgcgggtat
caaggttcgcttcacgaccgcggcagatctgttactccagctgtctacagcccagcgacagggtcgttataagaccctgcttcagcgggggatcatggcg
cccaaactgctcattatcgacgaaataggctatctgccgttcagccaggaggaggcaaagctgttcttccaggtcatcgccaaacgttacgagaagagcg
cgatgatcctgacgtccaacctgccgttcgggcagtgggatcagacgttcgccggggatgcagcactgacatcggcgatgctggatcggatcttacacca
ctcacacgttgttcaaataaaaggagagagctatcgactcaaacagaaacgaaaggccggggttatcgctgaggctaatcctgagtaaaacggtggatca
atattagaccgtcggtggagatgtaagtggatcactttttacccgtcgttgaca
gacagttatggaaattaaaatcctgcacaagcagggtatgagcagtcgggcgatcgccagagaactgggcatctcccgtaacactgtaaagcgctatctg
cgtgcgcaatctgagccgccaaaatatacgccgcgtcctgcagcatcttcacttctggatgaataccgggactatattcgccaacgcatcgctgatgccc
acccttataaaattccagcaacggttatcgcccgcgaaatcatggaacagggctatcgtggtggtatgaccatcctgagagagttcatacgttcctttgc
catacctcaggagccagagcctgtcgttcgcttcgaaaccgagcccggacggcagatgcaggtcgattgggggaccatgcggaacggcaaatccccgctt
catgtgttcgttgccgttctggggtacagcagaatgctgtacatcgagttcaccgacaatacgcgcttcgacacgctggaaacctgtcaccgtaatgcgt
tcagcttctttggcggcgtgccgcgggaaatactgtacgacaatatgaaaacagtggtactccagcgtgatgcttaccagaccggacagcaccggttcaa
tccttccctgtggcagttcggtaaagagatgggcttctctccccggctgtgccgccccttcagggcacaaaccaaaggcaaggtggagcggatggtgcag
tacacccgtaacagcttctacatcccgctaatgacgcgtctgcgcccgatggggatcaccgtcgatgttgagaccgcaaaccgctacggtctgcgctggc
tgtacgatgtggccaaccaacggaaacatgaaaccatccagatgcgtccctgtgatcgctggatagaggaacagcaatccatgctggcgctgccgccgga
gaaaaaacagtatgatgttcaggtcgacgaaggcctggtgaccttcgacaggcagccactgcaccatccgttgtccatctatgacacgttctgcagagga
gccgcatgatggttgaactgcaacatcaacggctgatggtcctcgccgaacaactgcaactggacagtcttatcagtgccgcgccagccctgtcgcaaca
ggcagtagaccaggaatggagctacatggacttcctggaacatctgctgcatgaagaaaaactggcccggcatcagcgaaaacaggccatgtttacccga
atggcggccttcccggcagtaaaaacgttcgaggaatatgacttcaccttcgccaccggggcaccacaaaaacaactccagtccttacgttcactgagct
tcatcgagcgtaacgaaaacatcgtgttgttggggccatccggcgtggggaaaacacatctggctatagcgatgggctacgaggcggtgcgtgcgggtat
caaggttcgcttcacgaccgcggcagatctgttactccagctgtctacagcccagcgacagggtcgttataagaccctgcttcagcgggggatcatggcg
cccaaactgctcattatcgacgaaataggctatctgccgttcagccaggaggaggcaaagctgttcttccaggtcatcgccaaacgttacgagaagagcg
cgatgatcctgacgtccaacctgccgttcgggcagtgggatcagacgttcgccggggatgcagcactgacatcggcgatgctggatcggatcttacacca
ctcacacgttgttcaaataaaaggagagagctatcgactcaaacagaaacgaaaggccggggttatcgctgaggctaatcctgagtaaaacggtggatca
atattagaccgtcggtggagatgtaagtggatcactttttacccgtcgttgaca
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 87 | 1109 | + | No |
Chemistry : DDE
ORF sequence :
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLRAQSEPPKYTPRPAASSLLDEYRDYIRQRIADAHPYKIPATVIAREIMEQGYRGGMTILREF
IRSFAIPQEPEPVVRFETEPGRQMQVDWGTMRNGKSPLHVFVAVLGYSRMLYIEFTDNTRFDTLETCHRNAFSFFGGVPREILYDNMKTVVLQRDAYQTG
QHRFNPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRYGLRWLYDVANQRKHETIQMRPCDRWIEEQQSML
ALPPEKKQYDVQVDEGLVTFDRQPLHHPLSIYDTFCRGAA
IRSFAIPQEPEPVVRFETEPGRQMQVDWGTMRNGKSPLHVFVAVLGYSRMLYIEFTDNTRFDTLETCHRNAFSFFGGVPREILYDNMKTVVLQRDAYQTG
QHRFNPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRYGLRWLYDVANQRKHETIQMRPCDRWIEEQQSML
ALPPEKKQYDVQVDEGLVTFDRQPLHHPLSIYDTFCRGAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
780 bp | 259 aa | 1109 | 1888 | + | No |
AG : IS21 helper
ORF sequence :
MVELQHQRLMVLAEQLQLDSLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMFTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIE
RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTLLQRGIMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMI
LTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKAGVIAEANPE
RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTLLQRGIMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMI
LTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKAGVIAEANPE
Blast result :
Comments
ISYru2 is 91% (transposase) and 96% (IS21 helper) aa similar to IS100
References
1] Thomas Jové (2016) Direct submission.
2] Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner
JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS,
Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden
CL, Xu Y, Minogue TD, Chain PS. Genome Announc. 2015 Apr 30;3(2)
2] Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner
JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS,
Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden
CL, Xu Y, Minogue TD, Chain PS. Genome Announc. 2015 Apr 30;3(2)