ISYru1

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009539 ND Yersinia ruckeri
Yersinia ruckeri
Yersinia ruckeri strain YRB (chromosome)
DNA section
IS Length : 1954 bp

Ends


IR Length : 20/27bp

IRL : tgtcactaacggtgcgaaagtgatccatatccgacgcctgaaatcagatc
IRR : tgtcaacgacgggtaaaaagtgatccacttacatctccaccgacggtcta

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

tgtcactaacggtgcgaaagtgatccatatccgacgcctgaaatcagatccaggggttaatctgctctcctgattcgggagagcttatggtcacttttga
gacagttatggaaattaaaatcctgcacaagcagggtatgagcagtcgggcgatcgccagagaactgggcatctcccgtaacactgtaaagcgctatctg
cgtgcgcaatctgagccgccaaaatatacgccgcgtcctgcagcatcttcacttctggatgaataccgggactatattcgccaacgcatcgctgatgccc
acccttataaaattccagcaacggttatcgcccgcgaaatcatggaacagggctatcgtggtggtatgaccatcctgagagagttcatacgttcctttgc
catacctcaggagccagagcctgtcgttcgcttcgaaaccgagcccggacggcagatgcaggtcgattgggggaccatgcggaacggcaaatccccgctt
catgtgttcgttgccgttctggggtacagcagaatgctgtacatcgagttcaccgacaatacgcgcttcgacacgctggaaacctgtcaccgtaatgcgt
tcagcttctttggcggcgtgccgcgggaaatactgtacgacaatatgaaaacagtggtactccagcgtgatgcttaccagaccggacagcaccggttcaa
tccttccctgtggcagttcggtaaagagatgggcttctctccccggctgtgccgccccttcagggcacaaaccaaaggcaaggtggagcggatggtgcag
tacacccgtaacagcttctacatcccgctaatgacgcgtctgcgcccgatggggatcaccgtcgatgttgagaccgcaaaccgctacggtctgcgctggc
tgtacgatgtggccaaccaacggaaacatgaaaccatccagatgcgtccctgtgatcgctggatagaggaacagcaatccatgctggcgctgccgccgga
gaaaaaacagtatgatgttcaggtcgacgaaggcctggtgaccttcgacaggcagccactgcaccatccgttgtccatctatgacacgttctgcagagga
gccgcatgatggttgaactgcaacatcaacggctgatggtcctcgccgaacaactgcaactggacagtcttatcagtgccgcgccagccctgtcgcaaca
ggcagtagaccaggaatggagctacatggacttcctggaacatctgctgcatgaagaaaaactggcccggcatcagcgaaaacaggccatgtttacccga
atggcggccttcccggcagtaaaaacgttcgaggaatatgacttcaccttcgccaccggggcaccacaaaaacaactccagtccttacgttcactgagct
tcatcgagcgtaacgaaaacatcgtgttgttggggccatccggcgtggggaaaacacatctggctatagcgatgggctacgaggcggtgcgtgcgggtat
caaggttcgcttcacgaccgcggcagatctgttactccagctgtctacagcccagcgacagggtcgttataagaccctgcttcagcgggggatcatggcg
cccaaactgctcattatcgacgaaataggctatctgccgttcagccaggaggaggcaaagctgttcttccaggtcatcgccaaacgttacgagaagagcg
cgatgatcctgacgtccaacctgccgttcgggcagtgggatcagacgttcgccggggatgcagcactgacatcggcgatgctggatcggatcttacacca
ctcacacgttgttcaaataaaaggagagagctatcgactcaaacagaaacgaaaggccggggttatcgctgaggctaatcctgagtaaaacggtggatca
atattagaccgtcggtggagatgtaagtggatcactttttacccgtcgttgaca
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa871109+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLRAQSEPPKYTPRPAASSLLDEYRDYIRQRIADAHPYKIPATVIAREIMEQGYRGGMTILREF
IRSFAIPQEPEPVVRFETEPGRQMQVDWGTMRNGKSPLHVFVAVLGYSRMLYIEFTDNTRFDTLETCHRNAFSFFGGVPREILYDNMKTVVLQRDAYQTG
QHRFNPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRYGLRWLYDVANQRKHETIQMRPCDRWIEEQQSML
ALPPEKKQYDVQVDEGLVTFDRQPLHHPLSIYDTFCRGAA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
780 bp259 aa11091888+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MVELQHQRLMVLAEQLQLDSLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMFTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIE
RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTLLQRGIMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMI
LTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKAGVIAEANPE

 

Blast result :
Comments
ISYru2 is 91% (transposase) and 96% (IS21 helper) aa similar to IS100
References
1] Thomas Jové (2016) Direct submission.
2] Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner
JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS,
Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden
CL, Xu Y, Minogue TD, Chain PS. Genome Announc. 2015 Apr 30;3(2)