ISNia1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MEEM01000001 | ND | Niabella sp. | Niabella sp. SCN 42-15 |
DNA section
IS Length : 994 bp
Ends
IR Length : 21/27
IRL : TAGAATTAGGCATTTTGAGCGCATATAAGAATAAGGGTTTGTTTAAGACT
IRR : TAGAATTAGGCATAACAGCCGCATTTATTGATTAAATATTTATAAGGGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCCTTATTTTTTAA | TTGATTTA | ATTTCTTAGTAATA | 8 |
DNA sequence
TAGAATTAGGCATTTTGAGCGCATATAAGAATAAGGGTTTGTTTAAGACTAACAATATTAGTATTTTTGAACTAAAATTATTAGTTATGTTTAAAGGGAT
TAATGCGATAGAGTTTACTAAGCGTTTTAAAAGCGATGCTGATTGTTTTGAATATTTATTGCAACTCAAATGGCCTGCGGGATTTAGTTGTAGTAGATGC
GGTTGCACAAAAGCAATCAAAGGCCGAACCTGGCACCACAAGCGCTGTGGCGAGTGCCGGTATGACGAGAATGTATTGGCCAATACAGTTTTTCATGGAG
TTAAAATGCCTTTGTTAAAAGCATTTCATATGATGTTCAGGCTTACTGCCAAAAAGAAAGGGATGTCCACTGTTGAATTAGGCCACGAAGTAGGAGTTCA
ACAAAAAACTGCATGGTTATTTAAACGTAAGGTGCAGCAAATGATGAAAGAAGATGATGACGATGAAATCGGCGGAAATGCAGATGTAGATGAGTTTTTG
TTAGGAGGCTATAGCGAAGGTAAACGTGGCAGAAGCCTGGAAGATAAGCAAGCTGTATTGATTGTGGCAGAGCAACTCGAAGATGGCAGAACGGGAAAAA
TCGGGCTGAAGCATATTGAAAATTTTGAAGCCGATACGCTGGGTTGTGCTATTGAACAGATCACAAATCCACAGGCTCATCTCAGGGCAGATAGCTACAG
TTCCTATAAATGTCTGCAACAAACGATGAACTTAGAAATTGTCAAATCAGAAAAGGGAAGCGCTTTAGCGCAATTGCACAAACAGATCATGCTTTTTAAG
AATTGGTTAAGAGGTATTCATCATAAGTGTTCCAAAGAACATCTACACGCGTACCTTAAAGAATATGTGTTCAGGTTCAATCGCAGAAACAAACGAAAAT
ACCTGTTTCACGAAATGATGCACAGGATGATGAACAGTTTCCCTCACCCTTATAAATATTTAATCAATAAATGCGGCTGTTATGCCTAATTCTA
TAATGCGATAGAGTTTACTAAGCGTTTTAAAAGCGATGCTGATTGTTTTGAATATTTATTGCAACTCAAATGGCCTGCGGGATTTAGTTGTAGTAGATGC
GGTTGCACAAAAGCAATCAAAGGCCGAACCTGGCACCACAAGCGCTGTGGCGAGTGCCGGTATGACGAGAATGTATTGGCCAATACAGTTTTTCATGGAG
TTAAAATGCCTTTGTTAAAAGCATTTCATATGATGTTCAGGCTTACTGCCAAAAAGAAAGGGATGTCCACTGTTGAATTAGGCCACGAAGTAGGAGTTCA
ACAAAAAACTGCATGGTTATTTAAACGTAAGGTGCAGCAAATGATGAAAGAAGATGATGACGATGAAATCGGCGGAAATGCAGATGTAGATGAGTTTTTG
TTAGGAGGCTATAGCGAAGGTAAACGTGGCAGAAGCCTGGAAGATAAGCAAGCTGTATTGATTGTGGCAGAGCAACTCGAAGATGGCAGAACGGGAAAAA
TCGGGCTGAAGCATATTGAAAATTTTGAAGCCGATACGCTGGGTTGTGCTATTGAACAGATCACAAATCCACAGGCTCATCTCAGGGCAGATAGCTACAG
TTCCTATAAATGTCTGCAACAAACGATGAACTTAGAAATTGTCAAATCAGAAAAGGGAAGCGCTTTAGCGCAATTGCACAAACAGATCATGCTTTTTAAG
AATTGGTTAAGAGGTATTCATCATAAGTGTTCCAAAGAACATCTACACGCGTACCTTAAAGAATATGTGTTCAGGTTCAATCGCAGAAACAAACGAAAAT
ACCTGTTTCACGAAATGATGCACAGGATGATGAACAGTTTCCCTCACCCTTATAAATATTTAATCAATAAATGCGGCTGTTATGCCTAATTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 87 | 989 | + | No |
Chemistry : DDE
ORF sequence :
MFKGINAIEFTKRFKSDADCFEYLLQLKWPAGFSCSRCGCTKAIKGRTWHHKRCGECRYDENVLANTVFHGVKMPLLKAFHMMFRLTAKKKGMSTVELGH
EVGVQQKTAWLFKRKVQQMMKEDDDDEIGGNADVDEFLLGGYSEGKRGRSLEDKQAVLIVAEQLEDGRTGKIGLKHIENFEADTLGCAIEQITNPQAHLR
ADSYSSYKCLQQTMNLEIVKSEKGSALAQLHKQIMLFKNWLRGIHHKCSKEHLHAYLKEYVFRFNRRNKRKYLFHEMMHRMMNSFPHPYKYLINKCGCYA
EVGVQQKTAWLFKRKVQQMMKEDDDDEIGGNADVDEFLLGGYSEGKRGRSLEDKQAVLIVAEQLEDGRTGKIGLKHIENFEADTLGCAIEQITNPQAHLR
ADSYSSYKCLQQTMNLEIVKSEKGSALAQLHKQIMLFKNWLRGIHHKCSKEHLHAYLKEYVFRFNRRNKRKYLFHEMMHRMMNSFPHPYKYLINKCGCYA
Blast result :
Comments
ISNia1 is 61% aa similar to ISPemu1.
References
1] ISfinder annotation (2016)
2] Kantor,R.S., van Zyl,A.W., van Hille,R.P., Thomas,B.C., Harrison,S.T. and Banfield,J.F. (2015) Environ. Microbiol. 17 (12), 4929-4941.
2] Kantor,R.S., van Zyl,A.W., van Hille,R.P., Thomas,B.C., Harrison,S.T. and Banfield,J.F. (2015) Environ. Microbiol. 17 (12), 4929-4941.