ISNia1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MEEM01000001 ND Niabella sp.
Niabella sp. SCN 42-15
DNA section
IS Length : 994 bp

Ends


IR Length : 21/27

IRL : TAGAATTAGGCATTTTGAGCGCATATAAGAATAAGGGTTTGTTTAAGACT
IRR : TAGAATTAGGCATAACAGCCGCATTTATTGATTAAATATTTATAAGGGTG

Insertion site


Left flankDirect repeatRight flankDR Length
GACCCTTATTTTTTAATTGATTTAATTTCTTAGTAATA8

DNA sequence

TAGAATTAGGCATTTTGAGCGCATATAAGAATAAGGGTTTGTTTAAGACTAACAATATTAGTATTTTTGAACTAAAATTATTAGTTATGTTTAAAGGGAT
TAATGCGATAGAGTTTACTAAGCGTTTTAAAAGCGATGCTGATTGTTTTGAATATTTATTGCAACTCAAATGGCCTGCGGGATTTAGTTGTAGTAGATGC
GGTTGCACAAAAGCAATCAAAGGCCGAACCTGGCACCACAAGCGCTGTGGCGAGTGCCGGTATGACGAGAATGTATTGGCCAATACAGTTTTTCATGGAG
TTAAAATGCCTTTGTTAAAAGCATTTCATATGATGTTCAGGCTTACTGCCAAAAAGAAAGGGATGTCCACTGTTGAATTAGGCCACGAAGTAGGAGTTCA
ACAAAAAACTGCATGGTTATTTAAACGTAAGGTGCAGCAAATGATGAAAGAAGATGATGACGATGAAATCGGCGGAAATGCAGATGTAGATGAGTTTTTG
TTAGGAGGCTATAGCGAAGGTAAACGTGGCAGAAGCCTGGAAGATAAGCAAGCTGTATTGATTGTGGCAGAGCAACTCGAAGATGGCAGAACGGGAAAAA
TCGGGCTGAAGCATATTGAAAATTTTGAAGCCGATACGCTGGGTTGTGCTATTGAACAGATCACAAATCCACAGGCTCATCTCAGGGCAGATAGCTACAG
TTCCTATAAATGTCTGCAACAAACGATGAACTTAGAAATTGTCAAATCAGAAAAGGGAAGCGCTTTAGCGCAATTGCACAAACAGATCATGCTTTTTAAG
AATTGGTTAAGAGGTATTCATCATAAGTGTTCCAAAGAACATCTACACGCGTACCTTAAAGAATATGTGTTCAGGTTCAATCGCAGAAACAAACGAAAAT
ACCTGTTTCACGAAATGATGCACAGGATGATGAACAGTTTCCCTCACCCTTATAAATATTTAATCAATAAATGCGGCTGTTATGCCTAATTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
903 bp300 aa87989+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFKGINAIEFTKRFKSDADCFEYLLQLKWPAGFSCSRCGCTKAIKGRTWHHKRCGECRYDENVLANTVFHGVKMPLLKAFHMMFRLTAKKKGMSTVELGH
EVGVQQKTAWLFKRKVQQMMKEDDDDEIGGNADVDEFLLGGYSEGKRGRSLEDKQAVLIVAEQLEDGRTGKIGLKHIENFEADTLGCAIEQITNPQAHLR
ADSYSSYKCLQQTMNLEIVKSEKGSALAQLHKQIMLFKNWLRGIHHKCSKEHLHAYLKEYVFRFNRRNKRKYLFHEMMHRMMNSFPHPYKYLINKCGCYA

 

Blast result :
Comments
ISNia1 is 61% aa similar to ISPemu1.
References
1] ISfinder annotation (2016)
2] Kantor,R.S., van Zyl,A.W., van Hille,R.P., Thomas,B.C., Harrison,S.T. and Banfield,J.F. (2015) Environ. Microbiol. 17 (12), 4929-4941.