ISFba4
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MNYN01000019 | ND | Flavobacteria bacterium | Flavobacteriaceae bacterium CG2_30_34_30 Flavobacteria bacterium |
DNA section
IS Length : 960 bp
Ends
IR Length : 22/29
IRL : TTGAGGTCGGTATTTAATTTCATATCTTTAACGTCTTATAAAACAAAGGA
IRR : TTGAGGTCGGTATCTAGCCACATATTATTTCTCTATGCGTAATATTATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCAGTTAAA | TAAATATT | AATTGACCAG | 8 |
DNA sequence
TTGAGGTCGGTATTTAATTTCATATCTTTAACGTCTTATAAAACAAAGGAAAAATGGAAATTTTCAAAGGTCAAAACCTCATAGAGTTTGCTGAACGCTT
TAAAACCGACCAAGATTGCAGAGAATATCTCTCAAACATTAAATGGTCAGAGCAATATGTTTGTAGAAAATGTAATCACACAAGGTGTCAAATACGAAAG
GATTTTGCGAGAACCTGCAATATTTGTAGCGATACCGAATCTGCTACGGCAAATACTTTATTCCATAAAGTGAAATTTGGATTGAAAAAAGCATTTTTCA
TCTGCTTTGAAATGGCAACGACCACAAAAAGCCTTTCTGCATCTCAAATGGCAGTTCGCTTTGGAGTTCAGGAGAAGACAGCAAGAATGTTCATGCAAAA
AGTTCGTGAGGCCATGAAATCGAGTGGGGACTTCCCTATGAAAGGTATCGTAAATGTTGATGAATATGTTGTTGGTGGCTACCAAGAAGGCAGGCCCGGC
AGAAGTTACGATAGTTCAAAGAAAAAAGCGGTGTGTGCCGTGGAACTGACAGATAGGGGAAAAGTGAAGCGTTTTTACACCTTTCAAATCCCGGATTATT
CAGCTAGGTCACTGCGGAAAATGTTTGATAGGCACATTGATAAAGAGGCTAAAATCACTACTGACAAATGGAAAGGCTACAATCCAATTGCCAATGATTA
TGACTTAACACAAATATTAAGCGATAAAGGGGCAAACTTTAAAGCCCTGCACGTGATGATCCATCAAGTTAAATCCTGGATAAGAACAACCTATTCATGG
GTAAGCAAAAAAAATATTAACAGGTATTTTGATGAGTTTTGCTACCGGATCAATCGGTCTCAAAGCAAAGACACAATATTTAACAATTTAATCAAAAGGA
TGGTAAAGACAGATAATATTACGCATAGAGAAATAATATGTGGCTAGATACCGACCTCAA
TAAAACCGACCAAGATTGCAGAGAATATCTCTCAAACATTAAATGGTCAGAGCAATATGTTTGTAGAAAATGTAATCACACAAGGTGTCAAATACGAAAG
GATTTTGCGAGAACCTGCAATATTTGTAGCGATACCGAATCTGCTACGGCAAATACTTTATTCCATAAAGTGAAATTTGGATTGAAAAAAGCATTTTTCA
TCTGCTTTGAAATGGCAACGACCACAAAAAGCCTTTCTGCATCTCAAATGGCAGTTCGCTTTGGAGTTCAGGAGAAGACAGCAAGAATGTTCATGCAAAA
AGTTCGTGAGGCCATGAAATCGAGTGGGGACTTCCCTATGAAAGGTATCGTAAATGTTGATGAATATGTTGTTGGTGGCTACCAAGAAGGCAGGCCCGGC
AGAAGTTACGATAGTTCAAAGAAAAAAGCGGTGTGTGCCGTGGAACTGACAGATAGGGGAAAAGTGAAGCGTTTTTACACCTTTCAAATCCCGGATTATT
CAGCTAGGTCACTGCGGAAAATGTTTGATAGGCACATTGATAAAGAGGCTAAAATCACTACTGACAAATGGAAAGGCTACAATCCAATTGCCAATGATTA
TGACTTAACACAAATATTAAGCGATAAAGGGGCAAACTTTAAAGCCCTGCACGTGATGATCCATCAAGTTAAATCCTGGATAAGAACAACCTATTCATGG
GTAAGCAAAAAAAATATTAACAGGTATTTTGATGAGTTTTGCTACCGGATCAATCGGTCTCAAAGCAAAGACACAATATTTAACAATTTAATCAAAAGGA
TGGTAAAGACAGATAATATTACGCATAGAGAAATAATATGTGGCTAGATACCGACCTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 54 | 947 | + | No |
Chemistry : DDE
ORF sequence :
MEIFKGQNLIEFAERFKTDQDCREYLSNIKWSEQYVCRKCNHTRCQIRKDFARTCNICSDTESATANTLFHKVKFGLKKAFFICFEMATTTKSLSASQMA
VRFGVQEKTARMFMQKVREAMKSSGDFPMKGIVNVDEYVVGGYQEGRPGRSYDSSKKKAVCAVELTDRGKVKRFYTFQIPDYSARSLRKMFDRHIDKEAK
ITTDKWKGYNPIANDYDLTQILSDKGANFKALHVMIHQVKSWIRTTYSWVSKKNINRYFDEFCYRINRSQSKDTIFNNLIKRMVKTDNITHREIICG
VRFGVQEKTARMFMQKVREAMKSSGDFPMKGIVNVDEYVVGGYQEGRPGRSYDSSKKKAVCAVELTDRGKVKRFYTFQIPDYSARSLRKMFDRHIDKEAK
ITTDKWKGYNPIANDYDLTQILSDKGANFKALHVMIHQVKSWIRTTYSWVSKKNINRYFDEFCYRINRSQSKDTIFNNLIKRMVKTDNITHREIICG
Blast result :
Comments
ISFba4 is 82% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ Microbiol. Apr 26. doi: 10.1111/1462-2920.13362.
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ Microbiol. Apr 26. doi: 10.1111/1462-2920.13362.