ISFba4

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MNYN01000019 ND Flavobacteria bacterium
Flavobacteriaceae bacterium CG2_30_34_30
Flavobacteria bacterium
DNA section
IS Length : 960 bp

Ends


IR Length : 22/29

IRL : TTGAGGTCGGTATTTAATTTCATATCTTTAACGTCTTATAAAACAAAGGA
IRR : TTGAGGTCGGTATCTAGCCACATATTATTTCTCTATGCGTAATATTATCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCAGTTAAATAAATATTAATTGACCAG8

DNA sequence

TTGAGGTCGGTATTTAATTTCATATCTTTAACGTCTTATAAAACAAAGGAAAAATGGAAATTTTCAAAGGTCAAAACCTCATAGAGTTTGCTGAACGCTT
TAAAACCGACCAAGATTGCAGAGAATATCTCTCAAACATTAAATGGTCAGAGCAATATGTTTGTAGAAAATGTAATCACACAAGGTGTCAAATACGAAAG
GATTTTGCGAGAACCTGCAATATTTGTAGCGATACCGAATCTGCTACGGCAAATACTTTATTCCATAAAGTGAAATTTGGATTGAAAAAAGCATTTTTCA
TCTGCTTTGAAATGGCAACGACCACAAAAAGCCTTTCTGCATCTCAAATGGCAGTTCGCTTTGGAGTTCAGGAGAAGACAGCAAGAATGTTCATGCAAAA
AGTTCGTGAGGCCATGAAATCGAGTGGGGACTTCCCTATGAAAGGTATCGTAAATGTTGATGAATATGTTGTTGGTGGCTACCAAGAAGGCAGGCCCGGC
AGAAGTTACGATAGTTCAAAGAAAAAAGCGGTGTGTGCCGTGGAACTGACAGATAGGGGAAAAGTGAAGCGTTTTTACACCTTTCAAATCCCGGATTATT
CAGCTAGGTCACTGCGGAAAATGTTTGATAGGCACATTGATAAAGAGGCTAAAATCACTACTGACAAATGGAAAGGCTACAATCCAATTGCCAATGATTA
TGACTTAACACAAATATTAAGCGATAAAGGGGCAAACTTTAAAGCCCTGCACGTGATGATCCATCAAGTTAAATCCTGGATAAGAACAACCTATTCATGG
GTAAGCAAAAAAAATATTAACAGGTATTTTGATGAGTTTTGCTACCGGATCAATCGGTCTCAAAGCAAAGACACAATATTTAACAATTTAATCAAAAGGA
TGGTAAAGACAGATAATATTACGCATAGAGAAATAATATGTGGCTAGATACCGACCTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa54947+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEIFKGQNLIEFAERFKTDQDCREYLSNIKWSEQYVCRKCNHTRCQIRKDFARTCNICSDTESATANTLFHKVKFGLKKAFFICFEMATTTKSLSASQMA
VRFGVQEKTARMFMQKVREAMKSSGDFPMKGIVNVDEYVVGGYQEGRPGRSYDSSKKKAVCAVELTDRGKVKRFYTFQIPDYSARSLRKMFDRHIDKEAK
ITTDKWKGYNPIANDYDLTQILSDKGANFKALHVMIHQVKSWIRTTYSWVSKKNINRYFDEFCYRINRSQSKDTIFNNLIKRMVKTDNITHREIICG

 

Blast result :
Comments
ISFba4 is 82% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Probst,A.J., Castelle,C.J., Singh,A., Brown,C.T., Anantharaman,K., Sharon,I., Hug,L.A., Burstein,D., Emerson,J.B., Thomas,B.C. and Banfield,J.F. (2016) Environ Microbiol. Apr 26. doi: 10.1111/1462-2920.13362.