ISFsu1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FOUT01000003 ND Flavobacterium succinicans
Flavobacterium succinicans DSM 4002
DNA section
IS Length : 959 bp

Ends


IR Length : 23/25

IRL : TAGAGGTCAATATTTAGTTTCATATCTTTGAAGTCAACAAAAAAGCTTTT
IRR : TAGAGGTCAATATTTAATTACATATAATTTGCTTATGTGTAATATTGTCA

Insertion site


Left flankDirect repeatRight flankDR Length
TGAATGTATTTAAATTTAAAAGAAAGCT8

DNA sequence

TAGAGGTCAATATTTAGTTTCATATCTTTGAAGTCAACAAAAAAGCTTTTTTATGGATATTTTTAAAGGACAAAACCTCATAGAGTTTGCTGAACGCTTC
AAAACAGATGAGAATTGCAAAGAATATTTGTCTGTTTTGAAATGGGAAAATGGGTATACTTGTCGAAAATGCGGTCATAAAAAAAGTCAAATCCGTAAGG
ATTTTTCAAGAACATGTAACATATGTAGTGATACAGAATCCAGTACTGCAAATACCTTATTTCACAAAGTAAAATTTGGTTTACGAAAAGCATTTTTCAT
TTGTTTTGAAATGGTAACCACCACAAAAAGTCTTTCGGCAATGCAGATAAGTGTGCGCTATAGTGTTCAGGAAAGTACGGCCCGATTATTTATGCATAAA
GTAAGAGAAGCTATGAAATCCAGTGGTAATAATCCCATTGATGGGATTGTTCATGTAGATGAATTTGTGGTTGGAGGATATGAAGAATCTAAACAAGGAA
GAAGTTACGATAGTAAAAAGAAAAAGTCCGTTTGTGCAGTAGAATTAACCCCTGAGGGGAAAGTGAAACGATTTTATGCTTTAAAAATAAACGATTTTTC
GGCAAAATCACTCAGAAAGATATTCGAGAATCACATCGGTAAAGAAGCAAAAATAACCACTGACAATTGGAAAGGGTATAGACCGATTGCAAAGGATTAT
AATATCACACAAATCCCGAGTGAATCAGGCAAAAACTTCAAAGCTTTACACACGATGATACATCAAATTAAAACTTGGATAAGGACAACATATTCATGGG
TTAGTGAAGGAAACATTGAGCGCTATTTTAATGAGTTCTGTTATAGAATAAATCGTTCACAAAACAAAGACACAATATTCAATAATCTAATCAAAAGAAT
GGTCAAATCTGACAATATTACACATAAGCAAATTATATGTAATTAAATATTGACCTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa53946+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIFKGQNLIEFAERFKTDENCKEYLSVLKWENGYTCRKCGHKKSQIRKDFSRTCNICSDTESSTANTLFHKVKFGLRKAFFICFEMVTTTKSLSAMQIS
VRYSVQESTARLFMHKVREAMKSSGNNPIDGIVHVDEFVVGGYEESKQGRSYDSKKKKSVCAVELTPEGKVKRFYALKINDFSAKSLRKIFENHIGKEAK
ITTDNWKGYRPIAKDYNITQIPSESGKNFKALHTMIHQIKTWIRTTYSWVSEGNIERYFNEFCYRINRSQNKDTIFNNLIKRMVKSDNITHKQIICN

 

Blast result :
Comments
ISFsu1 is 81% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.