ISFsu1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FOUT01000003 | ND | Flavobacterium succinicans | Flavobacterium succinicans DSM 4002 |
DNA section
IS Length : 959 bp
Ends
IR Length : 23/25
IRL : TAGAGGTCAATATTTAGTTTCATATCTTTGAAGTCAACAAAAAAGCTTTT
IRR : TAGAGGTCAATATTTAATTACATATAATTTGCTTATGTGTAATATTGTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAATGTATT | TAAATTTA | AAAGAAAGCT | 8 |
DNA sequence
TAGAGGTCAATATTTAGTTTCATATCTTTGAAGTCAACAAAAAAGCTTTTTTATGGATATTTTTAAAGGACAAAACCTCATAGAGTTTGCTGAACGCTTC
AAAACAGATGAGAATTGCAAAGAATATTTGTCTGTTTTGAAATGGGAAAATGGGTATACTTGTCGAAAATGCGGTCATAAAAAAAGTCAAATCCGTAAGG
ATTTTTCAAGAACATGTAACATATGTAGTGATACAGAATCCAGTACTGCAAATACCTTATTTCACAAAGTAAAATTTGGTTTACGAAAAGCATTTTTCAT
TTGTTTTGAAATGGTAACCACCACAAAAAGTCTTTCGGCAATGCAGATAAGTGTGCGCTATAGTGTTCAGGAAAGTACGGCCCGATTATTTATGCATAAA
GTAAGAGAAGCTATGAAATCCAGTGGTAATAATCCCATTGATGGGATTGTTCATGTAGATGAATTTGTGGTTGGAGGATATGAAGAATCTAAACAAGGAA
GAAGTTACGATAGTAAAAAGAAAAAGTCCGTTTGTGCAGTAGAATTAACCCCTGAGGGGAAAGTGAAACGATTTTATGCTTTAAAAATAAACGATTTTTC
GGCAAAATCACTCAGAAAGATATTCGAGAATCACATCGGTAAAGAAGCAAAAATAACCACTGACAATTGGAAAGGGTATAGACCGATTGCAAAGGATTAT
AATATCACACAAATCCCGAGTGAATCAGGCAAAAACTTCAAAGCTTTACACACGATGATACATCAAATTAAAACTTGGATAAGGACAACATATTCATGGG
TTAGTGAAGGAAACATTGAGCGCTATTTTAATGAGTTCTGTTATAGAATAAATCGTTCACAAAACAAAGACACAATATTCAATAATCTAATCAAAAGAAT
GGTCAAATCTGACAATATTACACATAAGCAAATTATATGTAATTAAATATTGACCTCTA
AAAACAGATGAGAATTGCAAAGAATATTTGTCTGTTTTGAAATGGGAAAATGGGTATACTTGTCGAAAATGCGGTCATAAAAAAAGTCAAATCCGTAAGG
ATTTTTCAAGAACATGTAACATATGTAGTGATACAGAATCCAGTACTGCAAATACCTTATTTCACAAAGTAAAATTTGGTTTACGAAAAGCATTTTTCAT
TTGTTTTGAAATGGTAACCACCACAAAAAGTCTTTCGGCAATGCAGATAAGTGTGCGCTATAGTGTTCAGGAAAGTACGGCCCGATTATTTATGCATAAA
GTAAGAGAAGCTATGAAATCCAGTGGTAATAATCCCATTGATGGGATTGTTCATGTAGATGAATTTGTGGTTGGAGGATATGAAGAATCTAAACAAGGAA
GAAGTTACGATAGTAAAAAGAAAAAGTCCGTTTGTGCAGTAGAATTAACCCCTGAGGGGAAAGTGAAACGATTTTATGCTTTAAAAATAAACGATTTTTC
GGCAAAATCACTCAGAAAGATATTCGAGAATCACATCGGTAAAGAAGCAAAAATAACCACTGACAATTGGAAAGGGTATAGACCGATTGCAAAGGATTAT
AATATCACACAAATCCCGAGTGAATCAGGCAAAAACTTCAAAGCTTTACACACGATGATACATCAAATTAAAACTTGGATAAGGACAACATATTCATGGG
TTAGTGAAGGAAACATTGAGCGCTATTTTAATGAGTTCTGTTATAGAATAAATCGTTCACAAAACAAAGACACAATATTCAATAATCTAATCAAAAGAAT
GGTCAAATCTGACAATATTACACATAAGCAAATTATATGTAATTAAATATTGACCTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 53 | 946 | + | No |
Chemistry : DDE
ORF sequence :
MDIFKGQNLIEFAERFKTDENCKEYLSVLKWENGYTCRKCGHKKSQIRKDFSRTCNICSDTESSTANTLFHKVKFGLRKAFFICFEMVTTTKSLSAMQIS
VRYSVQESTARLFMHKVREAMKSSGNNPIDGIVHVDEFVVGGYEESKQGRSYDSKKKKSVCAVELTPEGKVKRFYALKINDFSAKSLRKIFENHIGKEAK
ITTDNWKGYRPIAKDYNITQIPSESGKNFKALHTMIHQIKTWIRTTYSWVSEGNIERYFNEFCYRINRSQNKDTIFNNLIKRMVKSDNITHKQIICN
VRYSVQESTARLFMHKVREAMKSSGNNPIDGIVHVDEFVVGGYEESKQGRSYDSKKKKSVCAVELTPEGKVKRFYALKINDFSAKSLRKIFENHIGKEAK
ITTDNWKGYRPIAKDYNITQIPSESGKNFKALHTMIHQIKTWIRTTYSWVSEGNIERYFNEFCYRINRSQNKDTIFNNLIKRMVKSDNITHKQIICN
Blast result :
Comments
ISFsu1 is 81% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.