ISPto10

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003879 ND Psychroflexus torquis
Psychroflexus torquis ATCC 700755
DNA section
IS Length : 969 bp

Ends


IR Length : 27/35

IRL : TAGAGGTAGCTATTTAGTTTCATAGTTTTTTGTATCTTGAATGTGAATAA
IRR : TAGAGGTAGCTACTTAAGTACATATTAATTTGGATTGATATAATTTCGGT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTTGTATAAAATCAGTTTCCTTTTTA8
TTTACAAGGAAAAATTAATTTAGCAAGA8
GTAGTATAATTCAATTTATTTTTACAAC8
CCTTCTGTAATAAAGTGTTTTATGGAGC8
ATGCCGTATGAATAAATTGATAAAAAAAAATTCCAATAAG0
TAAGACTGAATCAACTGTTTCTCGATGG8

DNA sequence

TAGAGGTAGCTATTTAGTTTCATAGTTTTTTGTATCTTGAATGTGAATAAAATAAGAGTTGTATGATTAATTTTGAAGGGCAAAATGCCCAAGAGTTTTA
TGTTCGGTTCAATTCTGTGCTTTCTTGTAAGGAATACCTATCAGAAATAAAATGGGAAAATGGTTTCAAATGTGTAAAATGTAGTCATAGTGCTTGTCAA
ATTCGTTCCAATTATGATCGTACCTGTAATAAATGTAGTCATACAGAATCAGCATCTGCAAACACGCTTTTTCATAAAGTAAAATTTGGATTAGATAAGG
CTTTTATCATCTGTTTTGAAATGGCAACGACTACTCGTAGTTTATCAGCAAGTTATTTGGCAAAACGAGTAGGAGTTACACCTTATACTGCCCGAATGTT
CATGTACAAGGTTCGTGATGCTATGAAGTCTAGTGAGAACTTTCCAATGATGAATCGCGTTGAGGTAGATGAATTTGTGGTAGGTGGAAAAGAAGATGGT
AAGGTTGGGAGAAGCTATAATACCAAGAAAAAAAAAGCTGTAGTAGCCCTTGAACTAACAGAAAATGGAAAAGTGAAAAGAATGTACGTGAATCAAATAA
ATGACTTTTCTGCTAAAGAATTGCGTCCAATATTTGATAAGCATATCTCAAAAACGGCAAGTATCAACACGGATTTGTGGCGCGGATATAGACCTATAGC
TAAAGAATATAATATCGAACAGATACCTAGTAATTCTGGGAAAAACTTCAAAATATTACACACTATGATTCATCAAATCAAATCGTGGATTAGAACTACC
TATTCATATGTAAGTTCTTTCCATATTAGTGGATATTTTGATGAATTTTGTTATCGATTGAATAGGTCTAGAAGTAAGAAAACCATCTTTCATAACCTTG
TTTCTAGAATGATGCAAAAACCGAAATTATATCAATCCAAATTAATATGTACTTAAGTAGCTACCTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa63956+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MINFEGQNAQEFYVRFNSVLSCKEYLSEIKWENGFKCVKCSHSACQIRSNYDRTCNKCSHTESASANTLFHKVKFGLDKAFIICFEMATTTRSLSASYLA
KRVGVTPYTARMFMYKVRDAMKSSENFPMMNRVEVDEFVVGGKEDGKVGRSYNTKKKKAVVALELTENGKVKRMYVNQINDFSAKELRPIFDKHISKTAS
INTDLWRGYRPIAKEYNIEQIPSNSGKNFKILHTMIHQIKSWIRTTYSYVSSFHISGYFDEFCYRLNRSRSKKTIFHNLVSRMMQKPKLYQSKLICT

 

Blast result :
Comments
ISPto10 is 81% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Feng,S., Powell,S.M. and Bowman,J.P. (2006) Direct GenBank submission.