ISPto10
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003879 | ND | Psychroflexus torquis | Psychroflexus torquis ATCC 700755 |
DNA section
IS Length : 969 bp
Ends
IR Length : 27/35
IRL : TAGAGGTAGCTATTTAGTTTCATAGTTTTTTGTATCTTGAATGTGAATAA
IRR : TAGAGGTAGCTACTTAAGTACATATTAATTTGGATTGATATAATTTCGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTTGTATA | AAATCAGT | TTCCTTTTTA | 8 |
TTTACAAGGA | AAAATTAA | TTTAGCAAGA | 8 |
GTAGTATAAT | TCAATTTA | TTTTTACAAC | 8 |
CCTTCTGTAA | TAAAGTGT | TTTATGGAGC | 8 |
ATGCCGTATGAATAAATTGA | TAAAAAAAAATTCCAATAAG | 0 | |
TAAGACTGAA | TCAACTGT | TTCTCGATGG | 8 |
DNA sequence
TAGAGGTAGCTATTTAGTTTCATAGTTTTTTGTATCTTGAATGTGAATAAAATAAGAGTTGTATGATTAATTTTGAAGGGCAAAATGCCCAAGAGTTTTA
TGTTCGGTTCAATTCTGTGCTTTCTTGTAAGGAATACCTATCAGAAATAAAATGGGAAAATGGTTTCAAATGTGTAAAATGTAGTCATAGTGCTTGTCAA
ATTCGTTCCAATTATGATCGTACCTGTAATAAATGTAGTCATACAGAATCAGCATCTGCAAACACGCTTTTTCATAAAGTAAAATTTGGATTAGATAAGG
CTTTTATCATCTGTTTTGAAATGGCAACGACTACTCGTAGTTTATCAGCAAGTTATTTGGCAAAACGAGTAGGAGTTACACCTTATACTGCCCGAATGTT
CATGTACAAGGTTCGTGATGCTATGAAGTCTAGTGAGAACTTTCCAATGATGAATCGCGTTGAGGTAGATGAATTTGTGGTAGGTGGAAAAGAAGATGGT
AAGGTTGGGAGAAGCTATAATACCAAGAAAAAAAAAGCTGTAGTAGCCCTTGAACTAACAGAAAATGGAAAAGTGAAAAGAATGTACGTGAATCAAATAA
ATGACTTTTCTGCTAAAGAATTGCGTCCAATATTTGATAAGCATATCTCAAAAACGGCAAGTATCAACACGGATTTGTGGCGCGGATATAGACCTATAGC
TAAAGAATATAATATCGAACAGATACCTAGTAATTCTGGGAAAAACTTCAAAATATTACACACTATGATTCATCAAATCAAATCGTGGATTAGAACTACC
TATTCATATGTAAGTTCTTTCCATATTAGTGGATATTTTGATGAATTTTGTTATCGATTGAATAGGTCTAGAAGTAAGAAAACCATCTTTCATAACCTTG
TTTCTAGAATGATGCAAAAACCGAAATTATATCAATCCAAATTAATATGTACTTAAGTAGCTACCTCTA
TGTTCGGTTCAATTCTGTGCTTTCTTGTAAGGAATACCTATCAGAAATAAAATGGGAAAATGGTTTCAAATGTGTAAAATGTAGTCATAGTGCTTGTCAA
ATTCGTTCCAATTATGATCGTACCTGTAATAAATGTAGTCATACAGAATCAGCATCTGCAAACACGCTTTTTCATAAAGTAAAATTTGGATTAGATAAGG
CTTTTATCATCTGTTTTGAAATGGCAACGACTACTCGTAGTTTATCAGCAAGTTATTTGGCAAAACGAGTAGGAGTTACACCTTATACTGCCCGAATGTT
CATGTACAAGGTTCGTGATGCTATGAAGTCTAGTGAGAACTTTCCAATGATGAATCGCGTTGAGGTAGATGAATTTGTGGTAGGTGGAAAAGAAGATGGT
AAGGTTGGGAGAAGCTATAATACCAAGAAAAAAAAAGCTGTAGTAGCCCTTGAACTAACAGAAAATGGAAAAGTGAAAAGAATGTACGTGAATCAAATAA
ATGACTTTTCTGCTAAAGAATTGCGTCCAATATTTGATAAGCATATCTCAAAAACGGCAAGTATCAACACGGATTTGTGGCGCGGATATAGACCTATAGC
TAAAGAATATAATATCGAACAGATACCTAGTAATTCTGGGAAAAACTTCAAAATATTACACACTATGATTCATCAAATCAAATCGTGGATTAGAACTACC
TATTCATATGTAAGTTCTTTCCATATTAGTGGATATTTTGATGAATTTTGTTATCGATTGAATAGGTCTAGAAGTAAGAAAACCATCTTTCATAACCTTG
TTTCTAGAATGATGCAAAAACCGAAATTATATCAATCCAAATTAATATGTACTTAAGTAGCTACCTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 63 | 956 | + | No |
Chemistry : DDE
ORF sequence :
MINFEGQNAQEFYVRFNSVLSCKEYLSEIKWENGFKCVKCSHSACQIRSNYDRTCNKCSHTESASANTLFHKVKFGLDKAFIICFEMATTTRSLSASYLA
KRVGVTPYTARMFMYKVRDAMKSSENFPMMNRVEVDEFVVGGKEDGKVGRSYNTKKKKAVVALELTENGKVKRMYVNQINDFSAKELRPIFDKHISKTAS
INTDLWRGYRPIAKEYNIEQIPSNSGKNFKILHTMIHQIKSWIRTTYSYVSSFHISGYFDEFCYRLNRSRSKKTIFHNLVSRMMQKPKLYQSKLICT
KRVGVTPYTARMFMYKVRDAMKSSENFPMMNRVEVDEFVVGGKEDGKVGRSYNTKKKKAVVALELTENGKVKRMYVNQINDFSAKELRPIFDKHISKTAS
INTDLWRGYRPIAKEYNIEQIPSNSGKNFKILHTMIHQIKSWIRTTYSYVSSFHISGYFDEFCYRLNRSRSKKTIFHNLVSRMMQKPKLYQSKLICT
Blast result :
Comments
ISPto10 is 81% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Feng,S., Powell,S.M. and Bowman,J.P. (2006) Direct GenBank submission.
2] Feng,S., Powell,S.M. and Bowman,J.P. (2006) Direct GenBank submission.