ISfinder Mirror Site

ISJma1

Family IS1595
Group ISSod11

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
JH651380	ND	Joostella marina	Joostella marina DSM 19592

DNA section

IS Length : 958 bp

Ends

IR Length : 19/24

IRL : TTGAGTTAGTCATTTAAGTTCTGTATATTATTGTCAATAAAATTGGGATT
IRR : TTGAGTTATACACTTAATATCTGTTTTATTTGTGACTGATAAAGCGGTTT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TCAAACCGTGAT	AAGCTTTA	TTTAAAAAAT	8

DNA sequence

TTGAGTTAGTCATTTAAGTTCTGTATATTATTGTCAATAAAATTGGGATTATGGAAGTATTCAAAGGTCAAAACATACTAAACTTTATAAAAGAATTACC
TGATGATGATGCTTGTAAGGCTTATTTGGCCAAGATGAAGTGGCAAGATGGTTTTACTTGTGGGAAGTGTGGCCATACTAAGGGATGTGAAAAAGCAGGT
TACAAGTATCAATGCTATAATTGCCAACATGTGGAAAGCGCAACTGCCAATACTTTGTTCCATAAGGTGAAATTTGGTCTACAAAAGGCCTTTTGTATTG
TTTTCGAAATGTCCACTAGTAGTAAAAGCATATCGAGTATCCAAATGGGAAAACGTTTTGATATCCGCCAGGGAACAGCTTGGTATTTTATGCAGAAGGT
AAGGACCTCTATGGAAAGCAGCCGGCAATACCCACTGTCAGAAATTGTGCACGTTGATGAATTCACCGTTGGAGGAAAGGAAGAAGGGAAACAAGGCCGT
AGCTATGATTCCAAGAAGAAAAAGGCGGTCATAGCAGTGGAGCTCAACAACAAACACCAAATTAAAAGGGCTTATGTCAAGTCTATTGAAGATTATTCCT
CGAAATCATTGACGCCTATTTTTGAAGAGCACATTGGTGCCGGTGCTAAAGTGGTAACCGATAAATGGCGCGGTTACGAGCCCTTGAAAAAAACATATAA
TATCGAACAAAAACTAAGTTCAAAAGGCAAGAACTTCAAAGAATTGCATATTATAATCATGCAAGTAAAATCCTGGCTCCGGGCGATCCCCACGCATGTT
AGCAATTGGCATATCCAAAAGTACTTTGATGAGTTCTGTTTCAGGTTGAACCGGTCACAGGCAAAGCAAACTATATTTCACAAAACAATGGAAAAAATGG
TGACGAAAAAACCGCTTTATCAGTCACAAATAAAACAGATATTAAGTGTATAACTCAA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
903 bp	300 aa	51	953	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVFKGQNILNFIKELPDDDACKAYLAKMKWQDGFTCGKCGHTKGCEKAGYKYQCYNCQHVESATANTLFHKVKFGLQKAFCIVFEMSTSSKSISSIQMG
KRFDIRQGTAWYFMQKVRTSMESSRQYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNNKHQIKRAYVKSIEDYSSKSLTPIFEEHIGAGAK
VVTDKWRGYEPLKKTYNIEQKLSSKGKNFKELHIIIMQVKSWLRAIPTHVSNWHIQKYFDEFCFRLNRSQAKQTIFHKTMEKMVTKKPLYQSQIKQILSV

Blast result :

Comments

ISJma1 is 93% aa similar to ISGal1.

References

1] ISfinder annotation (2016)
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Chertkov,O., Ovchinnikova,G., Kyrpides,N., Mavromatis,K., Detter,J.C., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2012) Direct GenBank submission.