ISFlsp3

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JYGZ01000002 ND Flavobacterium sp.
Flavobacterium sp. 316
DNA section
IS Length : 957 bp

Ends


IR Length : 19/26

IRL : TGAGTTAATCATTTAATTTCTGTATTTTTAAGTCTTTAAAATCAGCTATT
IRR : TGAGTTATACACTTAGCGTCTGTTTTATATTTTTTTGATAAATTGGTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CTAAACCAATAAAAAAATATTTTTTAATTG10

DNA sequence

TGAGTTAATCATTTAATTTCTGTATTTTTAAGTCTTTAAAATCAGCTATTATAGAAGTATTTGAAGGACAAAGCATACTAAACTTTATAAAAGAATTGCC
AAATGATGAATCTTGTAAGGTATATTTAGCACAAATGAAATGGAAAGATGGTTTTATTTGTATGAAGTGTGGTCATACAAAAGGATGTGAAAAATCGGGA
TATAATTACCAATGTTATAATTGTCAACATGTTGAAAGTGCCACTGCAAATACGTTGTTTCACAAGGTTAAATTTGGTTTACATAAAGCTTTTTGTATTG
TGTTTGAAATGACAACTAGTAGTAAAAGTGTATCAAGTATTCAAATGGGCAAACGCTTTGGTATTCGCCAAGGTACTGCTTGGTATTTTATGCAAAAAGT
GCGCAAAGCAATGCAAAGTAGCCAGAAATATCCTTTGTCAGAATTGGTTCATGTAGACGAATTTACTGTGGGTGGAAAAGAAGAAGCAAAACAAGGAAGA
AGTTATAATTCTAAAAAGAAAAAAGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTCTATGTGAAATCTATTGACGACTATTCTT
CAAAATCACTAACTCCAATTTTTGAAGAACATATAAGTCAAACGACAAAGATAGTAACGGATAAATGGAGAGGATATGAACCTCTAAAAAAACTTTACAA
TATTGAACAGCAATTAAGTAATAATGGAAGAAATTTCAACGAATTACATATTATAATAATGCAATTGAAATCTTGGATTAGGACAACACCAACCCATGTT
AGTAAATGGCATATCCAAGCCTATTTTGATGAGTTTTGTTTTAGAATAAATCGTTCTCAATTTAAAACAAGTATTTTTCATAAAACCATAGAAAAAATGC
TAAATACAAAACCAATTTATCAAAAAAATATAAAACAGACGCTAAGTGTATAACTCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
903 bp300 aa51953+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVFEGQSILNFIKELPNDESCKVYLAQMKWKDGFICMKCGHTKGCEKSGYNYQCYNCQHVESATANTLFHKVKFGLHKAFCIVFEMTTSSKSVSSIQMG
KRFGIRQGTAWYFMQKVRKAMQSSQKYPLSELVHVDEFTVGGKEEAKQGRSYNSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTTK
IVTDKWRGYEPLKKLYNIEQQLSNNGRNFNELHIIIMQLKSWIRTTPTHVSKWHIQAYFDEFCFRINRSQFKTSIFHKTIEKMLNTKPIYQKNIKQTLSV

 

Blast result :
Comments
ISFlsp3 is 96% aa similar to ISFlsp2.
References
1] ISfinder annotation (2016)
2] Karczewska-Golec,J., Kochanowska-Lyzen,M., Olszewski,P., Balut,M., Moskot,M., Piotrowski,A., Golec,P. and Szalewska-Palasz,A. (2016) Genome Announc 4 (2).