ISFlsp3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JYGZ01000002 | ND | Flavobacterium sp. | Flavobacterium sp. 316 |
DNA section
IS Length : 957 bp
Ends
IR Length : 19/26
IRL : TGAGTTAATCATTTAATTTCTGTATTTTTAAGTCTTTAAAATCAGCTATT
IRR : TGAGTTATACACTTAGCGTCTGTTTTATATTTTTTTGATAAATTGGTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTAAACCAAT | AAAAAAATAT | TTTTTAATTG | 10 |
DNA sequence
TGAGTTAATCATTTAATTTCTGTATTTTTAAGTCTTTAAAATCAGCTATTATAGAAGTATTTGAAGGACAAAGCATACTAAACTTTATAAAAGAATTGCC
AAATGATGAATCTTGTAAGGTATATTTAGCACAAATGAAATGGAAAGATGGTTTTATTTGTATGAAGTGTGGTCATACAAAAGGATGTGAAAAATCGGGA
TATAATTACCAATGTTATAATTGTCAACATGTTGAAAGTGCCACTGCAAATACGTTGTTTCACAAGGTTAAATTTGGTTTACATAAAGCTTTTTGTATTG
TGTTTGAAATGACAACTAGTAGTAAAAGTGTATCAAGTATTCAAATGGGCAAACGCTTTGGTATTCGCCAAGGTACTGCTTGGTATTTTATGCAAAAAGT
GCGCAAAGCAATGCAAAGTAGCCAGAAATATCCTTTGTCAGAATTGGTTCATGTAGACGAATTTACTGTGGGTGGAAAAGAAGAAGCAAAACAAGGAAGA
AGTTATAATTCTAAAAAGAAAAAAGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTCTATGTGAAATCTATTGACGACTATTCTT
CAAAATCACTAACTCCAATTTTTGAAGAACATATAAGTCAAACGACAAAGATAGTAACGGATAAATGGAGAGGATATGAACCTCTAAAAAAACTTTACAA
TATTGAACAGCAATTAAGTAATAATGGAAGAAATTTCAACGAATTACATATTATAATAATGCAATTGAAATCTTGGATTAGGACAACACCAACCCATGTT
AGTAAATGGCATATCCAAGCCTATTTTGATGAGTTTTGTTTTAGAATAAATCGTTCTCAATTTAAAACAAGTATTTTTCATAAAACCATAGAAAAAATGC
TAAATACAAAACCAATTTATCAAAAAAATATAAAACAGACGCTAAGTGTATAACTCA
AAATGATGAATCTTGTAAGGTATATTTAGCACAAATGAAATGGAAAGATGGTTTTATTTGTATGAAGTGTGGTCATACAAAAGGATGTGAAAAATCGGGA
TATAATTACCAATGTTATAATTGTCAACATGTTGAAAGTGCCACTGCAAATACGTTGTTTCACAAGGTTAAATTTGGTTTACATAAAGCTTTTTGTATTG
TGTTTGAAATGACAACTAGTAGTAAAAGTGTATCAAGTATTCAAATGGGCAAACGCTTTGGTATTCGCCAAGGTACTGCTTGGTATTTTATGCAAAAAGT
GCGCAAAGCAATGCAAAGTAGCCAGAAATATCCTTTGTCAGAATTGGTTCATGTAGACGAATTTACTGTGGGTGGAAAAGAAGAAGCAAAACAAGGAAGA
AGTTATAATTCTAAAAAGAAAAAAGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTCTATGTGAAATCTATTGACGACTATTCTT
CAAAATCACTAACTCCAATTTTTGAAGAACATATAAGTCAAACGACAAAGATAGTAACGGATAAATGGAGAGGATATGAACCTCTAAAAAAACTTTACAA
TATTGAACAGCAATTAAGTAATAATGGAAGAAATTTCAACGAATTACATATTATAATAATGCAATTGAAATCTTGGATTAGGACAACACCAACCCATGTT
AGTAAATGGCATATCCAAGCCTATTTTGATGAGTTTTGTTTTAGAATAAATCGTTCTCAATTTAAAACAAGTATTTTTCATAAAACCATAGAAAAAATGC
TAAATACAAAACCAATTTATCAAAAAAATATAAAACAGACGCTAAGTGTATAACTCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 51 | 953 | + | No |
Chemistry : DDE
ORF sequence :
MEVFEGQSILNFIKELPNDESCKVYLAQMKWKDGFICMKCGHTKGCEKSGYNYQCYNCQHVESATANTLFHKVKFGLHKAFCIVFEMTTSSKSVSSIQMG
KRFGIRQGTAWYFMQKVRKAMQSSQKYPLSELVHVDEFTVGGKEEAKQGRSYNSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTTK
IVTDKWRGYEPLKKLYNIEQQLSNNGRNFNELHIIIMQLKSWIRTTPTHVSKWHIQAYFDEFCFRINRSQFKTSIFHKTIEKMLNTKPIYQKNIKQTLSV
KRFGIRQGTAWYFMQKVRKAMQSSQKYPLSELVHVDEFTVGGKEEAKQGRSYNSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTTK
IVTDKWRGYEPLKKLYNIEQQLSNNGRNFNELHIIIMQLKSWIRTTPTHVSKWHIQAYFDEFCFRINRSQFKTSIFHKTIEKMLNTKPIYQKNIKQTLSV
Blast result :
Comments
ISFlsp3 is 96% aa similar to ISFlsp2.
References
1] ISfinder annotation (2016)
2] Karczewska-Golec,J., Kochanowska-Lyzen,M., Olszewski,P., Balut,M., Moskot,M., Piotrowski,A., Golec,P. and Szalewska-Palasz,A. (2016) Genome Announc 4 (2).
2] Karczewska-Golec,J., Kochanowska-Lyzen,M., Olszewski,P., Balut,M., Moskot,M., Piotrowski,A., Golec,P. and Szalewska-Palasz,A. (2016) Genome Announc 4 (2).