ISCsp4

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KC771559 ND Comamonas sp
Comamonas sp
Comamonas sp plasmid
DNA section
IS Length : 2501 bp

Ends


IR Length : 23/32

IRL : TGTTGAATCACAACGAAAACTGGGCCATTTTTGGGGTGGAtcacactgaa
IRR : tgttgattcaccgtacaaactgagccagtgttcacgccgaatattgagcc

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGGGTCAAGGATTTGTTC0
GATCGTAGGCACCAAGCTCA0

DNA sequence

TGTTGAATCACAACGAAAACTGGGCCATTTTTGGGGTGGATCACACTGAAAATTGAGCCACGTTGACGGCTACGCTGCTGAATTTTTCAGCAAGGTGGTC
AGGAGTGATCAACGTGAGCACATTGAGTAAATTGCGCCGCCTCGTGCTGAGGGATGGCGTATCGGTGCGGGAGGCCAGCCGGCGGCTGGGGATCTCGCGC
AACACGGCCAGCAAGTGGCTGTCTGAGCCCGAAATGCGGGAGCCGAAGTACCCCGTGCGGGTGAAGGCGCAGGGCGTACTGACGCCTTATGAGGACACCT
TGGCCCGCTGGCTCAAGGCCGACCAGCACCGTAACAAGCGCGAGCGCCGAGGCATCAAGGCCATGTTCGAGGCCTTGCGCGCCATGGGCTACGGCGGCAG
CCGTGGGCCGGTCTACAGCTTTGCCAAGCAGTGGCGTCTGGCGCAGGACCACAGCGCCCGAGGGGCAGGCTTTGTGCCCCTGTCCTTTGAATTGGGCGAG
GCGTTCCAGTTTGACTGGAGCACCGAGTACGCGTTCATTGGCGGACTGCGCCGGCGCCTGGAGGTGGCGCACACCAAGCTGGCGGCCAGCCGGGCGTTTA
TGCTGTCGGCGTTCCACAGCCAGGCGCACGAGATGCTGTTTGAGGCCCATGCCCGGGCCTTTGCGGTGCTGGGCGGGGTGGCCAAGCGGGGTATCTACGA
CAACATGAAGACGGCAGTGGACAAGGTGGGCGCGGGCAAGCAGCGCAGCGTCAACGCCCGCTTCGAGGCGATGACCGGTCACTACCTCTTTGATCCCGAG
TTCTGCAACCGCGCAGCGGGCTGGGAGAAGGGCATCGTGGAGAAGAACGTGCAGGACCGCCGGCGTGGCATCTGGCGTGAAGCCAGCGAGCGACGCTGGG
CCAGCCTGAGCGAGCTCAACGCCTGGCTGCAGCAGGCGTGCGTGGACGCCTGGAGCGAGTTGCGCCACCCCGAGTGGCACGAGCTCACGGTGGCCGAGGT
GTGGCAGGACGAGAGGCTGCGCCTGACGCCGAACCCGCGTCCCTTCGATGGCTATGTGGAGGACCCGGTGCGGGTGACCTCGACCTCGCTGATCCACTTC
CAGCGCAACCGCTACAGCGTGCCGTGCGAATGGGTGCATGCGGTGGTCAGCCTGCGGGCGTACCACGACCGGCTGCTGGTGGTGGGCCCCAAGGGCCACA
GTGTGACGCTGCAGCGCTGCTTCGATCGTGACCAGACGATCTACGACTGGACCCACTACATTGCCCTGATCGAGCGCAAGCCCGGGGCGCTGCGTAATGG
CGCACCGTTCAAGACCATGCCCGAGCCGCTGCGACTGCTGCAAGACCAGTTGCTGCGTCATGCGGGCGGTGATCGGGTGATGGCCCAGGTGCTCAGCGCG
GTGACCGCCCACGGGCTGGAGGCGGTGCTGGTGGCGGTGGAGCTGGCCCTGCAGTCCGGGCGGGTCAGCGCCGAGCACGTACTCAATGTGCTGTCGCGCT
TGAAAGAACCCGAGCTGCGGGTGGAGCCGGCGACCACGTCCGTTGACCTGAAGACACCCTCACAGGCCGATCTGAAGCGCTACGACCGGCTGCGCCAGCC
CAAGGAGGTGCGCCATGCTTGAACTGGTCACCGACTTCAAGGCACTCGGTCTGCACGGCATGGCCAGTGCCTGGCCGGAGGTGCTGGGCACGGCACGCAT
CAAGGCGATGGACCACGAGGCGGTGCTGCGCCAGCTCATCAAGGCCGAGATGGCGCAGCGCGAGGTGCGCTCCATGGCCTACCAGATGCGCGTGGCCCGC
TTCCCCTCGCACCGGGACCTGGCGGGGTTTGACTTTGCCCAGGCGCATGTGCAGGAGGCACAGGTGCGAGAGCTGCACACCCTGCGCTTTACCGAATCCG
CGCACAACGTGGTCTTCGTCGGAGGTCCCGGAACGGGCAAGACGCACCTGGCCACCAGCCTGGGCATCGAGGCGATTCGGGTCCATGGCAAGCGGGTGCG
CTTCTTCTCGACGGTGGAGCTGGTCAACGCGCTGGAGTTGGAGAAGGCCCAGAACAAGGCTGGGCAGTTGGCCCACCGGCTGATGTACGTGGATCTGGTG
ATCCTGGACGAGATGGGCTATCTGCCCTTCACGCAGTCGGGTGGCGCCTTGCTGTTCCACCTGCTGTCCAAACTCTACGAGCGAACTAGCGTGGTCATCA
CCACCAACCTGAACTTCTCGGAGTGGAGCACCGTCTTTGGCGACGCCAAGATGACAACGGCGTTGCTGGACCGGCTGACCCACCACTGCCACATCGTGGA
GAGCGGCAACGAGAGCTGGCGCTTCAAGCATTCCAGTGCCGCTGCGGGGATCACCAAAACCGCACGGGCCAAAGCCCAGAAAGGAGCCGATCAAACGACC
CAGCCGTTAGACTTATCCACAACCAACTGACAAAACATCCTTAAAACTAGTGGCTCAATATTCGGCGTGAACACTGGCTCAGTTTGTACGGTGAATCAAC
A
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1509 bp502 aa1141622+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTLSKLRRLVLRDGVSVREASRRLGISRNTASKWLSEPEMREPKYPVRVKAQGVLTPYEDTLARWLKADQHRNKRERRGIKAMFEALRAMGYGGSRGPV
YSFAKQWRLAQDHSARGAGFVPLSFELGEAFQFDWSTEYAFIGGLRRRLEVAHTKLAASRAFMLSAFHSQAHEMLFEAHARAFAVLGGVAKRGIYDNMKT
AVDKVGAGKQRSVNARFEAMTGHYLFDPEFCNRAAGWEKGIVEKNVQDRRRGIWREASERRWASLSELNAWLQQACVDAWSELRHPEWHELTVAEVWQDE
RLRLTPNPRPFDGYVEDPVRVTSTSLIHFQRNRYSVPCEWVHAVVSLRAYHDRLLVVGPKGHSVTLQRCFDRDQTIYDWTHYIALIERKPGALRNGAPFK
TMPEPLRLLQDQLLRHAGGDRVMAQVLSAVTAHGLEAVLVAVELALQSGRVSAEHVLNVLSRLKEPELRVEPATTSVDLKTPSQADLKRYDRLRQPKEVR
HA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
816 bp271 aa16152430+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MLELVTDFKALGLHGMASAWPEVLGTARIKAMDHEAVLRQLIKAEMAQREVRSMAYQMRVARFPSHRDLAGFDFAQAHVQEAQVRELHTLRFTESAHNVV
FVGGPGTGKTHLATSLGIEAIRVHGKRVRFFSTVELVNALELEKAQNKAGQLAHRLMYVDLVILDEMGYLPFTQSGGALLFHLLSKLYERTSVVITTNLN
FSEWSTVFGDAKMTTALLDRLTHHCHIVESGNESWRFKHSSAAAGITKTARAKAQKGADQTTQPLDLSTTN

 

Blast result :
Comments
ISCsp4 is 73% (transposasse) and 79% (helper) similar to ISAav1.
References