ISPa65
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LC075717 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa NCGM 2991 |
DNA section
IS Length : 2520 bp
Ends
IR Length : 27
IRL : tgttgaatcacgagcaaaactgagccactgaagggtctccgtcacgtcca
IRR : tgttgaatcacgagcaaaactgagccaggcgtcacgtccaaaactgagcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gcaggaccat | cgtagttttc | 0 |
DNA sequence
TGTTGAATCACGAGCAAAACTGAGCCACTGAAGGGTCTCCGTCACGTCCAATTTTGAGCCACGTTATCCACCTATCCTGCTGCTTTTTGCAGCAGCGGGG
GACAGGAGTGATCAACGTGAGCACATTGAGCAAATTGCGCCGCATGGTCCACCGTGACCACCTGAGCGTGCGCGAAGCCAGCCGCAGGCTTGGCATCTCC
CGCAACACGGCCACCAAGTGGCTTGAAGCCGATGAGATGGTCGAACCCCGTTATCCCAAGCGGGCGGCCATCCCGAGCGTTCTAGATCCTTACAAGGAAC
AGCTGTCCACCTGGCTGAAGGCCGACAGCCACCGCAACAAGCGCGAGCGCCGTGGCATCAAGGCCATGTTCCGGGCATTGCGGGCCATGGGCTATCCGGG
CAGCCGAGGCCCGGTCTATGAGTTCGCCAAGCGCTGGCAGCAGGCGCAGTCCGATGCGCCCACGCGCATGGCCTTCGTGCCCATGAGTTTCGAGATGGGC
GAGGCCTTCCAGTTCGACTGGAGCTGCGAGTACCTGTTCGTGGGCGGCATGCGCAAACGCCTGGAGGCCGCGCACACCAAGCTGGCGGCCAGCCGCGCCT
TCATGCTCACCGCCTACTTCAGCCAGGCCCACGAGATGCTGTTTGATGCCCACGCGCGGGCCTTTGCTGCCTTCGGTGGCGTGCCCCGCCGGGGCATCTA
CGACAACATGAAGACCGCTGTCGACAAGGTTGGCCAGGGCAAGAGCCGCACGGTCAACGCCCGCTTCGAGGCCATGACGGGCCACTACCTGTTCGAGCCT
GAGTTCTGCAACCGCGCCGCCGGCTGGGAGAAGGGCATTGTCGAGAAGAACGTGCAGGATCGCCGTCGCGGCATCTGGCTGGAGGCGGCCGAACGCCGCT
GGCCTGACCTGGAGAGCCTCAATGCGTGGCTGCACCAGGCCTGCCTGGACGCCTGGCATGAACTGCCGCACCCCGAGTGGCCCGAGCTGACCATTGCCGA
CGTCTGGCAGCAAGAGCAGACGCACCTGATGCCCAACCCTGCGCCATTCGATGGCTATGTCGAGCAGGTGGCACGGGTAACGGCCACCTCGCTGATCCAC
TATCAGCGCAACCGCTACAGCGTGCCTTGCGAGTGGGCGCACGCAACGGTGAGCCTGCGCGCCTATCCTGACCGCTTGGTGGTGGTCGGCCCCAGCACCG
ATGCGCCCGAGCCGCCAGTGAGCCTGCCACGCAGTTTTGAGCGTGGGCAGACCTTGTACGACTGGCGCCATTACATCAGCCTGCTCGAACGCAAGCCCGG
GGCCTTGCGCAACGGCGCGCCCTTCAAGACCATGCCCGAGCCCCTGCAACATCTTCAGGCGCACCTGCTGCGCCACCCTGGCGGCGACCGCGTGATGGCC
CAGGTGCTCATGGCGATTACCTTGCACGGGCTCGATGACGTGCTCGTTGCCGTCGAGTTGGCGCTGCAATCCGGCCGCGTGAGCGCCGACCATGTGCTCA
ACGTACTGGCCAGGCTCAAGGAACCCGAAGCTGTGCACAGCTTGCCCGAAGCCGCCTTGACTTCACTGACGTTGCAGGAGCCGCCTCAGGCCGATGTGTC
GCGCTATGACCGCCTGCGCCAGATCCAGGAGGGTGACCATGTCCAATGACATCGCCGCTGGCCTCAAGGGCTTGAGCCTGCACGGCATGGCCAGTGCCTG
GCCTGAACTGCTGGGTATCGCGCGGCTCAAGTCGCTCGACCATGAAGCCTTGCTGCATCAGCTCATCAAGGCCGAGGGAGCGCACCGGGAAGTGCGCTCC
ATGGCTTACCAGATGCGGGTGGCCCGATTCCCACACCACCGCGACCTGGCAGGCTTTGCATTTGATCAGGCCCAGGTCGACGAGGCACTGGTGCGTCAGT
TGCACGAACTCAGGTTCATCGACTCAGCCCACAACGTGGTCTTCGTGGGCGGCCCTGGCACCGGCAAGACACACCTAGCCACCAGCCTCGGCGTTCATGC
CATCCGTGCACATGGCAAGCGGGTGCGCTTCTTCTCGACCGTAGAACTGGTCAACATGCTGGAAGCAGAGAAGGCGCAGGGCAAGGCCGGGCAACTGGCG
CATCGGCTCATGTACGTCGATCTCGTCATCCTCGACGAGATGGGCTACCTGCCCTTCAGTCAGGCCGGTGGCGCCTTGCTGTTCCACCTGCTGTCCAAGC
TCTATGAGCGCACCAGCGTGGTCGTCACCACCAACCTGTCGTTCTCAGAGTGGGCCAGTGTGTTCGGCGACGCCAAGATGACCACCGCGCTGCTGGACCG
GCTCACCCATCACTGCCACATCGTCGAGACCGGCAATCAGAGCTGGCGATTCAGGCACTCGACGGCACAACCGGCCGCCACCAAGTCCAACCGCATCAAA
ACACCCAAAGGAGCAGACCAGACAGTAGACTTATCCACAACCGAGCAGTCCATTTCTTCGTCAACCTAGTGGCTCAGTTTTGGACGTGACGCCTGGCTCA
GTTTTGCTCGTGATTCAACA
GACAGGAGTGATCAACGTGAGCACATTGAGCAAATTGCGCCGCATGGTCCACCGTGACCACCTGAGCGTGCGCGAAGCCAGCCGCAGGCTTGGCATCTCC
CGCAACACGGCCACCAAGTGGCTTGAAGCCGATGAGATGGTCGAACCCCGTTATCCCAAGCGGGCGGCCATCCCGAGCGTTCTAGATCCTTACAAGGAAC
AGCTGTCCACCTGGCTGAAGGCCGACAGCCACCGCAACAAGCGCGAGCGCCGTGGCATCAAGGCCATGTTCCGGGCATTGCGGGCCATGGGCTATCCGGG
CAGCCGAGGCCCGGTCTATGAGTTCGCCAAGCGCTGGCAGCAGGCGCAGTCCGATGCGCCCACGCGCATGGCCTTCGTGCCCATGAGTTTCGAGATGGGC
GAGGCCTTCCAGTTCGACTGGAGCTGCGAGTACCTGTTCGTGGGCGGCATGCGCAAACGCCTGGAGGCCGCGCACACCAAGCTGGCGGCCAGCCGCGCCT
TCATGCTCACCGCCTACTTCAGCCAGGCCCACGAGATGCTGTTTGATGCCCACGCGCGGGCCTTTGCTGCCTTCGGTGGCGTGCCCCGCCGGGGCATCTA
CGACAACATGAAGACCGCTGTCGACAAGGTTGGCCAGGGCAAGAGCCGCACGGTCAACGCCCGCTTCGAGGCCATGACGGGCCACTACCTGTTCGAGCCT
GAGTTCTGCAACCGCGCCGCCGGCTGGGAGAAGGGCATTGTCGAGAAGAACGTGCAGGATCGCCGTCGCGGCATCTGGCTGGAGGCGGCCGAACGCCGCT
GGCCTGACCTGGAGAGCCTCAATGCGTGGCTGCACCAGGCCTGCCTGGACGCCTGGCATGAACTGCCGCACCCCGAGTGGCCCGAGCTGACCATTGCCGA
CGTCTGGCAGCAAGAGCAGACGCACCTGATGCCCAACCCTGCGCCATTCGATGGCTATGTCGAGCAGGTGGCACGGGTAACGGCCACCTCGCTGATCCAC
TATCAGCGCAACCGCTACAGCGTGCCTTGCGAGTGGGCGCACGCAACGGTGAGCCTGCGCGCCTATCCTGACCGCTTGGTGGTGGTCGGCCCCAGCACCG
ATGCGCCCGAGCCGCCAGTGAGCCTGCCACGCAGTTTTGAGCGTGGGCAGACCTTGTACGACTGGCGCCATTACATCAGCCTGCTCGAACGCAAGCCCGG
GGCCTTGCGCAACGGCGCGCCCTTCAAGACCATGCCCGAGCCCCTGCAACATCTTCAGGCGCACCTGCTGCGCCACCCTGGCGGCGACCGCGTGATGGCC
CAGGTGCTCATGGCGATTACCTTGCACGGGCTCGATGACGTGCTCGTTGCCGTCGAGTTGGCGCTGCAATCCGGCCGCGTGAGCGCCGACCATGTGCTCA
ACGTACTGGCCAGGCTCAAGGAACCCGAAGCTGTGCACAGCTTGCCCGAAGCCGCCTTGACTTCACTGACGTTGCAGGAGCCGCCTCAGGCCGATGTGTC
GCGCTATGACCGCCTGCGCCAGATCCAGGAGGGTGACCATGTCCAATGACATCGCCGCTGGCCTCAAGGGCTTGAGCCTGCACGGCATGGCCAGTGCCTG
GCCTGAACTGCTGGGTATCGCGCGGCTCAAGTCGCTCGACCATGAAGCCTTGCTGCATCAGCTCATCAAGGCCGAGGGAGCGCACCGGGAAGTGCGCTCC
ATGGCTTACCAGATGCGGGTGGCCCGATTCCCACACCACCGCGACCTGGCAGGCTTTGCATTTGATCAGGCCCAGGTCGACGAGGCACTGGTGCGTCAGT
TGCACGAACTCAGGTTCATCGACTCAGCCCACAACGTGGTCTTCGTGGGCGGCCCTGGCACCGGCAAGACACACCTAGCCACCAGCCTCGGCGTTCATGC
CATCCGTGCACATGGCAAGCGGGTGCGCTTCTTCTCGACCGTAGAACTGGTCAACATGCTGGAAGCAGAGAAGGCGCAGGGCAAGGCCGGGCAACTGGCG
CATCGGCTCATGTACGTCGATCTCGTCATCCTCGACGAGATGGGCTACCTGCCCTTCAGTCAGGCCGGTGGCGCCTTGCTGTTCCACCTGCTGTCCAAGC
TCTATGAGCGCACCAGCGTGGTCGTCACCACCAACCTGTCGTTCTCAGAGTGGGCCAGTGTGTTCGGCGACGCCAAGATGACCACCGCGCTGCTGGACCG
GCTCACCCATCACTGCCACATCGTCGAGACCGGCAATCAGAGCTGGCGATTCAGGCACTCGACGGCACAACCGGCCGCCACCAAGTCCAACCGCATCAAA
ACACCCAAAGGAGCAGACCAGACAGTAGACTTATCCACAACCGAGCAGTCCATTTCTTCGTCAACCTAGTGGCTCAGTTTTGGACGTGACGCCTGGCTCA
GTTTTGCTCGTGATTCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 117 | 1649 | + | No |
Chemistry : DDE
ORF sequence :
MSTLSKLRRMVHRDHLSVREASRRLGISRNTATKWLEADEMVEPRYPKRAAIPSVLDPYKEQLSTWLKADSHRNKRERRGIKAMFRALRAMGYPGSRGPV
YEFAKRWQQAQSDAPTRMAFVPMSFEMGEAFQFDWSCEYLFVGGMRKRLEAAHTKLAASRAFMLTAYFSQAHEMLFDAHARAFAAFGGVPRRGIYDNMKT
AVDKVGQGKSRTVNARFEAMTGHYLFEPEFCNRAAGWEKGIVEKNVQDRRRGIWLEAAERRWPDLESLNAWLHQACLDAWHELPHPEWPELTIADVWQQE
QTHLMPNPAPFDGYVEQVARVTATSLIHYQRNRYSVPCEWAHATVSLRAYPDRLVVVGPSTDAPEPPVSLPRSFERGQTLYDWRHYISLLERKPGALRNG
APFKTMPEPLQHLQAHLLRHPGGDRVMAQVLMAITLHGLDDVLVAVELALQSGRVSADHVLNVLARLKEPEAVHSLPEAALTSLTLQEPPQADVSRYDRL
RQIQEGDHVQ
YEFAKRWQQAQSDAPTRMAFVPMSFEMGEAFQFDWSCEYLFVGGMRKRLEAAHTKLAASRAFMLTAYFSQAHEMLFDAHARAFAAFGGVPRRGIYDNMKT
AVDKVGQGKSRTVNARFEAMTGHYLFEPEFCNRAAGWEKGIVEKNVQDRRRGIWLEAAERRWPDLESLNAWLHQACLDAWHELPHPEWPELTIADVWQQE
QTHLMPNPAPFDGYVEQVARVTATSLIHYQRNRYSVPCEWAHATVSLRAYPDRLVVVGPSTDAPEPPVSLPRSFERGQTLYDWRHYISLLERKPGALRNG
APFKTMPEPLQHLQAHLLRHPGGDRVMAQVLMAITLHGLDDVLVAVELALQSGRVSADHVLNVLARLKEPEAVHSLPEAALTSLTLQEPPQADVSRYDRL
RQIQEGDHVQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
831 bp | 276 aa | 1639 | 2469 | + | No |
AG : IS21 helper
ORF sequence :
MSNDIAAGLKGLSLHGMASAWPELLGIARLKSLDHEALLHQLIKAEGAHREVRSMAYQMRVARFPHHRDLAGFAFDQAQVDEALVRQLHELRFIDSAHNV
VFVGGPGTGKTHLATSLGVHAIRAHGKRVRFFSTVELVNMLEAEKAQGKAGQLAHRLMYVDLVILDEMGYLPFSQAGGALLFHLLSKLYERTSVVVTTNL
SFSEWASVFGDAKMTTALLDRLTHHCHIVETGNQSWRFRHSTAQPAATKSNRIKTPKGADQTVDLSTTEQSISSST
VFVGGPGTGKTHLATSLGVHAIRAHGKRVRFFSTVELVNMLEAEKAQGKAGQLAHRLMYVDLVILDEMGYLPFSQAGGALLFHLLSKLYERTSVVVTTNL
SFSEWASVFGDAKMTTALLDRLTHHCHIVETGNQSWRFRHSTAQPAATKSNRIKTPKGADQTVDLSTTEQSISSST
Blast result :
Comments
ISPa65 is 99% (transposase) and 96% (IS21 helper) aa similar to ISAav1.
References