ISCte8
- Family IS21
- Group
Isoform Synonym(s) ISCte9
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001220 | ND | Comamonas testosteroni | Comamonas testosteroni CNB-2 Comamonas testosteroni DF2 |
DNA section
IS Length : 2496 bp
Ends
IR Length : 23/28
IRL : tgttgatttccacccagaagtgacccactagcccccggtttttccatctc
IRR : tgttaatttccacgcataactgacccgccatttccatctcaaactgaccc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
gcaatctaaa | gtcaagggta | 0 | |
aacagccagg | ggcattgagc | 0 | |
cgggcccata | actcgttgtt | 0 | |
tccctgagac | atccgttgcc | 0 | |
tttggcaagg | ttgaggccta | 0 | |
atggcatgga | ggcagtcacc | 0 | |
cggcgtgatt | gacagc | tgccctgaag | 6 |
DNA sequence
TGTTGATTTCCACCCAGAAGTGACCCACTAGCCCCCGGTTTTTCCATCTCAATCTGACCCACGCATTAACCCTAGCCTGCTGCTTTCTTGTGCAGCAGGA
GACCAGGAGTGATTGACGTGGCCACTTTGAGTGTCATCCGGCGCTGGGCTCTGCGTGAGCACCTGTCCATCCGAGAGATCGCCCGCAGAACTGGGCTTTC
TCGCAATACCATCCGCAAGTATTTGCGCTCCGACGTTGTGCAACCTCAACTTGCACAGCGCACCATCGCCACCAAGCTCGACCCCTTCGCCAGCAAGCTG
TCAGGCTGGCTGCGTACAGAAGTCAACCGCTCTCGCAAGCAGCGGCGCACGATCAAGCAGATGTTTCTGGACTTGCAGGCGTTGGGCTACACCGGCTCAT
ACAACCGAGTCGCTGCCTTTGCCAGAGTATGGAAGGCTCAGTGTCATGCGGCGGAGCAGACATCAGGGCGAGGCGTTTTTGTGCCCCTGGTCTTCGGCGC
TGGAGAAGCCTTCCAGTTTGATTGGAGCGAGGATTGGGCTGTCATCGCGGGTGTACGCACCAAGCTGCAAGTGGCTCACTTCAAGCTCAGCCACAGCCGA
GCCTTCTATCTGCGGGCCTATCCCCTGCAAACCCATGAGATGCTGTTCGATGCTCACAACCGTGCCTTTGCGGTGTTTGGAGGCGTCCCTAGGCGGGGGA
TCTACGACAACATGCGCACAGCCGTCGATCGTGTCGGCCGTGGCAAGCTCAGAGAGGTCAACGCCCGCTTCAGTGCTATGGCCAGCCATTTCCTGTTCGA
GGCACAGTTTTGCAATCCGGCCTCGGGATGGGAGAAGGGACAGGTCGAGAAGAATGTTCGGGACGCTCGCCATCGTATCTGGCAATCTGTACCAACGTTT
CCAACACTCAGAGCCCTCAACGATTGGCTAGAGCAACGGTGTCAACAGTTATGGCAAGAGATTGCGCATGGCCAATTGCCTGGCTCACTTGCTGATGTGT
GGGAGCAAGAACGCTCAACCTTGATGCCCATGCCTCGACCGTTTGACGGCTTTGTCGAGCATGCCAAACGAGTCTCTCCCACCTGCCTAGTTCACTTCGA
GCGCAATCGCTACAGCGTGCCGGCCTCTTATGCCAACAGGCCCGTGAGCTTGCAGGTTTATGCCGACCGCCTGGTTGTCGTGGCCGAAGGTCAGTTCGTC
TGTGAACACCCGCGCATCATTGAGCGCAATCACCAAGGTTCTGGGCGTACGGTCTATGACTGGCGCCATTACCTGGCCGTATTGCAGCGCAAGCCTGGCG
CATTGCGCAACGGTGCGCCGTTTGCCGAGTTGCCAGACGCATTCAAACGACTGCAAGCTTTGCTCCTGAAGCAACCTGGCGGCGATCGCGAGATGGTGGA
AGTTCTTGCCTTGGTGTTGCAGCACGATGAGCAAGCCGTCCTGGCCGCTGTCGAGTTGGCACTGGAGGATGGCGTACCTCGCAAGACCCACATCATCAAT
ATCTTGCACCGCCTCATTGATGGAACACCGGAACCTGAGCCCATCCATTCACCCCAAGCCTTGGCCTTGATCGTTGAGCCACAAGCCAACGTCGTGCGCT
ATGACCAACTCCGACAGGTGCGCCATGCGTCATGACCCCGCCATTGCTGCGATCATCATCATGCTGCGCCAACTCAAGATGTTTGGCATGGCCCAGGCCG
TGACAGAACTTGCAGAGCAAGGCTCACCAGCATTTGAAGCAGCACACCCCATACTGTCGCAACTGCTCAAGGCCGAGAGTGCTGAGCGAGAAGTGCGCTC
CATTGCCTATCAACTCAAGGTCGCCAGGTTCCCGGTCTACAGAGATCTGGCAGGCTTTGACTTCGCACACAGTGAAGTCAATGAAGCCTTGGTACGCAGC
CTTCATCGCTGTGAGTTCATCGAGAAGGCTAACAACGTGGTGCTTGTCGGTGGGCCTGGCACGGGCAAGACGCACATTGCTACAGCACTGGGTATTCAGG
CCATTGAGCACCACCGTCAAAGGGTGCGCTTCTTCTCTACTGTTGAGTTGGTTAATGCGCTGGAGCAAGAGAAAGTGCAAGGCAAAGCCGGACAGCTCGC
CCACAGGCTGGTGCATACGGATCTGGTGATTCTCGATGAGCTGGGCTATCTGCCCTTCAGCTCATCTGGCGGTGCGCTACTGTTTCATCTGCTCTCGACG
CTTTACGAACGCACCAGCGTAGTAATCACCACCAACCTGAGCTTCAGCGAATGGGCCAGCGTGTTTGGTGATGCCAAGATGACCACGGCCCTGCTGGACC
GCCTGACCCATCACTGCCATATTCTGGAAACAGGCAACGACAGCTACCGCTTCAAGCACAGCAGTGCAGTCCAACAACCGCCCATGAAGAAGGAGAGAAA
CAAAACCTGATCCACATCTTGAGCCTTGCGGCTCAAGTCAAAGGGTGGGTCAGTTTGAGATGGAAATGGCGGGTCAGTTATGCGTGGAAATTAACA
GACCAGGAGTGATTGACGTGGCCACTTTGAGTGTCATCCGGCGCTGGGCTCTGCGTGAGCACCTGTCCATCCGAGAGATCGCCCGCAGAACTGGGCTTTC
TCGCAATACCATCCGCAAGTATTTGCGCTCCGACGTTGTGCAACCTCAACTTGCACAGCGCACCATCGCCACCAAGCTCGACCCCTTCGCCAGCAAGCTG
TCAGGCTGGCTGCGTACAGAAGTCAACCGCTCTCGCAAGCAGCGGCGCACGATCAAGCAGATGTTTCTGGACTTGCAGGCGTTGGGCTACACCGGCTCAT
ACAACCGAGTCGCTGCCTTTGCCAGAGTATGGAAGGCTCAGTGTCATGCGGCGGAGCAGACATCAGGGCGAGGCGTTTTTGTGCCCCTGGTCTTCGGCGC
TGGAGAAGCCTTCCAGTTTGATTGGAGCGAGGATTGGGCTGTCATCGCGGGTGTACGCACCAAGCTGCAAGTGGCTCACTTCAAGCTCAGCCACAGCCGA
GCCTTCTATCTGCGGGCCTATCCCCTGCAAACCCATGAGATGCTGTTCGATGCTCACAACCGTGCCTTTGCGGTGTTTGGAGGCGTCCCTAGGCGGGGGA
TCTACGACAACATGCGCACAGCCGTCGATCGTGTCGGCCGTGGCAAGCTCAGAGAGGTCAACGCCCGCTTCAGTGCTATGGCCAGCCATTTCCTGTTCGA
GGCACAGTTTTGCAATCCGGCCTCGGGATGGGAGAAGGGACAGGTCGAGAAGAATGTTCGGGACGCTCGCCATCGTATCTGGCAATCTGTACCAACGTTT
CCAACACTCAGAGCCCTCAACGATTGGCTAGAGCAACGGTGTCAACAGTTATGGCAAGAGATTGCGCATGGCCAATTGCCTGGCTCACTTGCTGATGTGT
GGGAGCAAGAACGCTCAACCTTGATGCCCATGCCTCGACCGTTTGACGGCTTTGTCGAGCATGCCAAACGAGTCTCTCCCACCTGCCTAGTTCACTTCGA
GCGCAATCGCTACAGCGTGCCGGCCTCTTATGCCAACAGGCCCGTGAGCTTGCAGGTTTATGCCGACCGCCTGGTTGTCGTGGCCGAAGGTCAGTTCGTC
TGTGAACACCCGCGCATCATTGAGCGCAATCACCAAGGTTCTGGGCGTACGGTCTATGACTGGCGCCATTACCTGGCCGTATTGCAGCGCAAGCCTGGCG
CATTGCGCAACGGTGCGCCGTTTGCCGAGTTGCCAGACGCATTCAAACGACTGCAAGCTTTGCTCCTGAAGCAACCTGGCGGCGATCGCGAGATGGTGGA
AGTTCTTGCCTTGGTGTTGCAGCACGATGAGCAAGCCGTCCTGGCCGCTGTCGAGTTGGCACTGGAGGATGGCGTACCTCGCAAGACCCACATCATCAAT
ATCTTGCACCGCCTCATTGATGGAACACCGGAACCTGAGCCCATCCATTCACCCCAAGCCTTGGCCTTGATCGTTGAGCCACAAGCCAACGTCGTGCGCT
ATGACCAACTCCGACAGGTGCGCCATGCGTCATGACCCCGCCATTGCTGCGATCATCATCATGCTGCGCCAACTCAAGATGTTTGGCATGGCCCAGGCCG
TGACAGAACTTGCAGAGCAAGGCTCACCAGCATTTGAAGCAGCACACCCCATACTGTCGCAACTGCTCAAGGCCGAGAGTGCTGAGCGAGAAGTGCGCTC
CATTGCCTATCAACTCAAGGTCGCCAGGTTCCCGGTCTACAGAGATCTGGCAGGCTTTGACTTCGCACACAGTGAAGTCAATGAAGCCTTGGTACGCAGC
CTTCATCGCTGTGAGTTCATCGAGAAGGCTAACAACGTGGTGCTTGTCGGTGGGCCTGGCACGGGCAAGACGCACATTGCTACAGCACTGGGTATTCAGG
CCATTGAGCACCACCGTCAAAGGGTGCGCTTCTTCTCTACTGTTGAGTTGGTTAATGCGCTGGAGCAAGAGAAAGTGCAAGGCAAAGCCGGACAGCTCGC
CCACAGGCTGGTGCATACGGATCTGGTGATTCTCGATGAGCTGGGCTATCTGCCCTTCAGCTCATCTGGCGGTGCGCTACTGTTTCATCTGCTCTCGACG
CTTTACGAACGCACCAGCGTAGTAATCACCACCAACCTGAGCTTCAGCGAATGGGCCAGCGTGTTTGGTGATGCCAAGATGACCACGGCCCTGCTGGACC
GCCTGACCCATCACTGCCATATTCTGGAAACAGGCAACGACAGCTACCGCTTCAAGCACAGCAGTGCAGTCCAACAACCGCCCATGAAGAAGGAGAGAAA
CAAAACCTGATCCACATCTTGAGCCTTGCGGCTCAAGTCAAAGGGTGGGTCAGTTTGAGATGGAAATGGCGGGTCAGTTATGCGTGGAAATTAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1527 bp | 508 aa | 109 | 1635 | + | No |
Chemistry : DDE
ORF sequence :
MIDVATLSVIRRWALREHLSIREIARRTGLSRNTIRKYLRSDVVQPQLAQRTIATKLDPFASKLSGWLRTEVNRSRKQRRTIKQMFLDLQALGYTGSYNR
VAAFARVWKAQCHAAEQTSGRGVFVPLVFGAGEAFQFDWSEDWAVIAGVRTKLQVAHFKLSHSRAFYLRAYPLQTHEMLFDAHNRAFAVFGGVPRRGIYD
NMRTAVDRVGRGKLREVNARFSAMASHFLFEAQFCNPASGWEKGQVEKNVRDARHRIWQSVPTFPTLRALNDWLEQRCQQLWQEIAHGQLPGSLADVWEQ
ERSTLMPMPRPFDGFVEHAKRVSPTCLVHFERNRYSVPASYANRPVSLQVYADRLVVVAEGQFVCEHPRIIERNHQGSGRTVYDWRHYLAVLQRKPGALR
NGAPFAELPDAFKRLQALLLKQPGGDREMVEVLALVLQHDEQAVLAAVELALEDGVPRKTHIINILHRLIDGTPEPEPIHSPQALALIVEPQANVVRYDQ
LRQVRHAS*
VAAFARVWKAQCHAAEQTSGRGVFVPLVFGAGEAFQFDWSEDWAVIAGVRTKLQVAHFKLSHSRAFYLRAYPLQTHEMLFDAHNRAFAVFGGVPRRGIYD
NMRTAVDRVGRGKLREVNARFSAMASHFLFEAQFCNPASGWEKGQVEKNVRDARHRIWQSVPTFPTLRALNDWLEQRCQQLWQEIAHGQLPGSLADVWEQ
ERSTLMPMPRPFDGFVEHAKRVSPTCLVHFERNRYSVPASYANRPVSLQVYADRLVVVAEGQFVCEHPRIIERNHQGSGRTVYDWRHYLAVLQRKPGALR
NGAPFAELPDAFKRLQALLLKQPGGDREMVEVLALVLQHDEQAVLAAVELALEDGVPRKTHIINILHRLIDGTPEPEPIHSPQALALIVEPQANVVRYDQ
LRQVRHAS*
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 1661 | 2410 | + | No |
AG : IS21 helper
ORF sequence :
MTNSDRCAMRHDPAIAAIIIMLRQLKMFGMAQAVTELAEQGSPAFEAAHPILSQLLKAESAEREVRSIAYQLKVARFPVYRDLAGFDFAHSEVNEALVRS
LHRCEFIEKANNVVLVGGPGTGKTHIATALGIQAIEHHRQRVRFFSTVELVNALEQEKVQGKAGQLAHRLVHTDLVILDELGYLPFSSSGGALLFHLLST
LYERTSVVITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSYRFKHSSAVQQPPMKKERNKT
LHRCEFIEKANNVVLVGGPGTGKTHIATALGIQAIEHHRQRVRFFSTVELVNALEQEKVQGKAGQLAHRLVHTDLVILDELGYLPFSSSGGALLFHLLST
LYERTSVVITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSYRFKHSSAVQQPPMKKERNKT
Blast result :
Comments
ISCte8 is 89% (transposase) and 93% (helper) aa similar to ISAlde1.
References