ISCte8

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISCte9
Accession numberTranspositionOriginHost
CP001220 ND Comamonas testosteroni
Comamonas testosteroni CNB-2
Comamonas testosteroni DF2
DNA section
IS Length : 2496 bp

Ends


IR Length : 23/28

IRL : tgttgatttccacccagaagtgacccactagcccccggtttttccatctc
IRR : tgttaatttccacgcataactgacccgccatttccatctcaaactgaccc

Insertion site


Left flankDirect repeatRight flankDR Length
gcaatctaaagtcaagggta0
aacagccaggggcattgagc0
cgggcccataactcgttgtt0
tccctgagacatccgttgcc0
tttggcaaggttgaggccta0
atggcatggaggcagtcacc0
cggcgtgattgacagctgccctgaag6

DNA sequence

TGTTGATTTCCACCCAGAAGTGACCCACTAGCCCCCGGTTTTTCCATCTCAATCTGACCCACGCATTAACCCTAGCCTGCTGCTTTCTTGTGCAGCAGGA
GACCAGGAGTGATTGACGTGGCCACTTTGAGTGTCATCCGGCGCTGGGCTCTGCGTGAGCACCTGTCCATCCGAGAGATCGCCCGCAGAACTGGGCTTTC
TCGCAATACCATCCGCAAGTATTTGCGCTCCGACGTTGTGCAACCTCAACTTGCACAGCGCACCATCGCCACCAAGCTCGACCCCTTCGCCAGCAAGCTG
TCAGGCTGGCTGCGTACAGAAGTCAACCGCTCTCGCAAGCAGCGGCGCACGATCAAGCAGATGTTTCTGGACTTGCAGGCGTTGGGCTACACCGGCTCAT
ACAACCGAGTCGCTGCCTTTGCCAGAGTATGGAAGGCTCAGTGTCATGCGGCGGAGCAGACATCAGGGCGAGGCGTTTTTGTGCCCCTGGTCTTCGGCGC
TGGAGAAGCCTTCCAGTTTGATTGGAGCGAGGATTGGGCTGTCATCGCGGGTGTACGCACCAAGCTGCAAGTGGCTCACTTCAAGCTCAGCCACAGCCGA
GCCTTCTATCTGCGGGCCTATCCCCTGCAAACCCATGAGATGCTGTTCGATGCTCACAACCGTGCCTTTGCGGTGTTTGGAGGCGTCCCTAGGCGGGGGA
TCTACGACAACATGCGCACAGCCGTCGATCGTGTCGGCCGTGGCAAGCTCAGAGAGGTCAACGCCCGCTTCAGTGCTATGGCCAGCCATTTCCTGTTCGA
GGCACAGTTTTGCAATCCGGCCTCGGGATGGGAGAAGGGACAGGTCGAGAAGAATGTTCGGGACGCTCGCCATCGTATCTGGCAATCTGTACCAACGTTT
CCAACACTCAGAGCCCTCAACGATTGGCTAGAGCAACGGTGTCAACAGTTATGGCAAGAGATTGCGCATGGCCAATTGCCTGGCTCACTTGCTGATGTGT
GGGAGCAAGAACGCTCAACCTTGATGCCCATGCCTCGACCGTTTGACGGCTTTGTCGAGCATGCCAAACGAGTCTCTCCCACCTGCCTAGTTCACTTCGA
GCGCAATCGCTACAGCGTGCCGGCCTCTTATGCCAACAGGCCCGTGAGCTTGCAGGTTTATGCCGACCGCCTGGTTGTCGTGGCCGAAGGTCAGTTCGTC
TGTGAACACCCGCGCATCATTGAGCGCAATCACCAAGGTTCTGGGCGTACGGTCTATGACTGGCGCCATTACCTGGCCGTATTGCAGCGCAAGCCTGGCG
CATTGCGCAACGGTGCGCCGTTTGCCGAGTTGCCAGACGCATTCAAACGACTGCAAGCTTTGCTCCTGAAGCAACCTGGCGGCGATCGCGAGATGGTGGA
AGTTCTTGCCTTGGTGTTGCAGCACGATGAGCAAGCCGTCCTGGCCGCTGTCGAGTTGGCACTGGAGGATGGCGTACCTCGCAAGACCCACATCATCAAT
ATCTTGCACCGCCTCATTGATGGAACACCGGAACCTGAGCCCATCCATTCACCCCAAGCCTTGGCCTTGATCGTTGAGCCACAAGCCAACGTCGTGCGCT
ATGACCAACTCCGACAGGTGCGCCATGCGTCATGACCCCGCCATTGCTGCGATCATCATCATGCTGCGCCAACTCAAGATGTTTGGCATGGCCCAGGCCG
TGACAGAACTTGCAGAGCAAGGCTCACCAGCATTTGAAGCAGCACACCCCATACTGTCGCAACTGCTCAAGGCCGAGAGTGCTGAGCGAGAAGTGCGCTC
CATTGCCTATCAACTCAAGGTCGCCAGGTTCCCGGTCTACAGAGATCTGGCAGGCTTTGACTTCGCACACAGTGAAGTCAATGAAGCCTTGGTACGCAGC
CTTCATCGCTGTGAGTTCATCGAGAAGGCTAACAACGTGGTGCTTGTCGGTGGGCCTGGCACGGGCAAGACGCACATTGCTACAGCACTGGGTATTCAGG
CCATTGAGCACCACCGTCAAAGGGTGCGCTTCTTCTCTACTGTTGAGTTGGTTAATGCGCTGGAGCAAGAGAAAGTGCAAGGCAAAGCCGGACAGCTCGC
CCACAGGCTGGTGCATACGGATCTGGTGATTCTCGATGAGCTGGGCTATCTGCCCTTCAGCTCATCTGGCGGTGCGCTACTGTTTCATCTGCTCTCGACG
CTTTACGAACGCACCAGCGTAGTAATCACCACCAACCTGAGCTTCAGCGAATGGGCCAGCGTGTTTGGTGATGCCAAGATGACCACGGCCCTGCTGGACC
GCCTGACCCATCACTGCCATATTCTGGAAACAGGCAACGACAGCTACCGCTTCAAGCACAGCAGTGCAGTCCAACAACCGCCCATGAAGAAGGAGAGAAA
CAAAACCTGATCCACATCTTGAGCCTTGCGGCTCAAGTCAAAGGGTGGGTCAGTTTGAGATGGAAATGGCGGGTCAGTTATGCGTGGAAATTAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1527 bp508 aa1091635+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIDVATLSVIRRWALREHLSIREIARRTGLSRNTIRKYLRSDVVQPQLAQRTIATKLDPFASKLSGWLRTEVNRSRKQRRTIKQMFLDLQALGYTGSYNR
VAAFARVWKAQCHAAEQTSGRGVFVPLVFGAGEAFQFDWSEDWAVIAGVRTKLQVAHFKLSHSRAFYLRAYPLQTHEMLFDAHNRAFAVFGGVPRRGIYD
NMRTAVDRVGRGKLREVNARFSAMASHFLFEAQFCNPASGWEKGQVEKNVRDARHRIWQSVPTFPTLRALNDWLEQRCQQLWQEIAHGQLPGSLADVWEQ
ERSTLMPMPRPFDGFVEHAKRVSPTCLVHFERNRYSVPASYANRPVSLQVYADRLVVVAEGQFVCEHPRIIERNHQGSGRTVYDWRHYLAVLQRKPGALR
NGAPFAELPDAFKRLQALLLKQPGGDREMVEVLALVLQHDEQAVLAAVELALEDGVPRKTHIINILHRLIDGTPEPEPIHSPQALALIVEPQANVVRYDQ
LRQVRHAS*

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
750 bp249 aa16612410+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MTNSDRCAMRHDPAIAAIIIMLRQLKMFGMAQAVTELAEQGSPAFEAAHPILSQLLKAESAEREVRSIAYQLKVARFPVYRDLAGFDFAHSEVNEALVRS
LHRCEFIEKANNVVLVGGPGTGKTHIATALGIQAIEHHRQRVRFFSTVELVNALEQEKVQGKAGQLAHRLVHTDLVILDELGYLPFSSSGGALLFHLLST
LYERTSVVITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSYRFKHSSAVQQPPMKKERNKT

 

Blast result :
Comments
ISCte8 is 89% (transposase) and 93% (helper) aa similar to ISAlde1.
References