ISCsp3

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BBXH01000014 ND Comamonas sp.
Comamonas sp. E6
DNA section
IS Length : 2495 bp

Ends


IR Length : 15/16

IRL : tgttgatttccacgcagaagtgacccactaacccccaggatttccatcta
IRR : tgttgatttccatgcaatctgaacccaccaattccatctcgatctgaccc

Insertion site


Left flankDirect repeatRight flankDR Length
GCATGATTTGGGCGAAGCGATTCACGGAGA7

DNA sequence

TGTTGATTTCCACGCAGAAGTGACCCACTAACCCCCAGGATTTCCATCTAAATCTGATCCACGTATTAACCCTAGCCTGCTGCTTTCTTAGGCAGCAGGA
GACCAGGAGTGATAGACGTGGCAACACTGAGTGTCATCAGGCGATGGGCCCTGCGCGAGCAACTGTCCATCCGCGAGATCTCCCGCCGCACAGGCCTGTC
TCGCAACACCATTCGCAAGTACCTGCGCGCTGACTCTGCCGAGCCCAGCTATGCCAAGCGGGTCAGTCCCAGCAAGCTCGATCCGTTCGCCACCAAGCTG
GCCGACTGGCTCAAGACCGAGTCCACCCGGGGTCGCAAGCAGCGACGCACCGTCAAACAGATGTACTTTGACCTGAAGGTGCTGGGCTACAGCGGCTCTT
ACAACCGCGTGGCGGCCTTCGCCCGAGTCTGGCAAGCCCAGCAGATGCAGGCACAGCAAACGACCGGCCGCGGCACCTTCGTGCCCCTCCTATTCGATTG
CGGTGAGGCGTTCCAGTTTGACTGGTCCGAGGACTGGGCCGTCATCGCCGGTGTGCGCACCAAGCTGCAAGTGGCCCACTTCAAGCTCAGCCACAGTCGT
GCTTTTTATCTGCGTGCCTACCCCCTGCAGACCCATGAGATGCTGTTTGACGCTCACAACCACGCCTTTGAGGTGCTTGGTGGCGTACCTCGCAGGGGCA
TCTACGACAACATGCGCACCGCCGTGGATCGGGTCCGCAAGGGTAAGGACAGAGACGTCAATGCACGCTTTGCCGCCATGGTCAGCCACTTCCTGTTTGA
AGCCGAGTTCTGCAACCCGGCCTCCGGGTGGGAGAAGGGGCAGGTGGAGAAGAATGTGCGCGACGCTCGTCATCGCCTGTGGCAATCGGTGCCAGCGTTT
GCAACGCTGGACGACCTCAATGCCTGGTTAGAGCAGCGCTGCCAGGCGCTGTGGCACGAGATTGAGCATGGCAAGCTTCCCGGAACCGTTGCGGACGTCT
GGGCCCAGGAGCGCTCTGCACTGATGCCCGTGCCAAGGGCCTTTGATGGCTTCGTGGAGCACACCAAGCGAGTCTCACCCACCTGCCTGATTCACTTTGA
GCGCAACCGCTACAGTGTCCCGGCTCCATACGCCAACAGGCCCGTTAGCCTGCGTGTCTATGCCAGTCGGCTGGTTGTGGCGGCTGAGGGGCAGCTGCTC
TGCGAGCACCAGCGGGTCATTGAGCGCAATCATCACGGTGCGGGCCAGACGATCTACGACTGGCGTCACTACCTGGCCGTCCTCCAGCGCAAACCTGGCG
CTTTGCGCAACGGTGCCCCATTCCAGGAATTACCCCCAGCCTTCAAGAGGCTGCAGGCCTTGCTGCTCAAGCAGCGAGGCGGAGATCGGGAGATGGTGGA
GATCCTGGCCCTGGTGCTTCACCATGATGAGCAGGCGGTGCTCGCAGCAGTTGAGCTGGCGTTGGAGGCCGGGGCTCCCAGCAAGACACACATCCTGAAC
GTTCTGCATAGATTGGTCGATGGCAGACCCGCTCCGGCTCCGGTCACTTCCCCCCAAGCCTTGCGCCTGGTGGTGGAACCCATGGCCAATGTGCTGCGCT
ATGACCAGTTGAGGGAGGTGCGCCATGCGACATGACCCAGCTATTGCGGCCATCGTCATCATGTTGCGAGAGCTCAAGATGCATGGCATGGCTCAGGCGG
TCAATGAACTGGCTGAACAAGGGGCCCCAGCGTTTGACGCTGCGCAGCCCATCCTGTCGCAGTTGCTCAAGGCCGAGACTGCCGAACGGGAGGTACGCTC
GGTGGCCTATCAGCTCAAGGTGGCAAGGTTCCCAGCCTATCGAGACCTGACGGGCTTCAACTTCAGCCACAGCGAGGTCAATGAAGCCTTGGTTCGGCAG
TTGCACCGCTGTGAGTTCCTAGAAGATGCCAACAACGTGGTTCTCGTGGGCGGACCGGGAACGGGTAAGACCCACATTGCCACAGCCCTGGGCGTGCAAG
CGATTGAACATCACCACCGCAGGGTGCGGTTCTTCTCAACGGTGGAGTTGGTCAACGCATTGGAGGAAGAGAAGGCTCAGGGCAAGGCGGGACAGCTCGC
TCACCGGCTGGCGTATGCCGACCTGGTGATTCTGGATGAGCTGGGTTACCTGCCATTCAGTGCCTCTGGCGGGGCACTTCTGTTCCATCTGCTGTCCAAA
CTCTACGAACGCACCAGCGTCGTGATCACCACCAACCTGAGCTTCAGTGAATGGGCCAGCGTGTTCGGGGACGCAAAGATGACCACGGCACTGCTGGACC
GACTCACCCATCACTGCCATATTCTTGAAACCGGCAACGACAGCTACCGATTCAAGAACAGTTCTGCCCAGCAACCCCAATCTAAAAAGGAAAGGAACAC
CAAGAACTTATCCACAACGTGAGCTTCAAGTTCACGCAACAGGGTGGGTCAGATCGAGATGGAATTGGTGGGTTCAGATTGCATGGAAATCAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1527 bp508 aa1091635+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIDVATLSVIRRWALREQLSIREISRRTGLSRNTIRKYLRADSAEPSYAKRVSPSKLDPFATKLADWLKTESTRGRKQRRTVKQMYFDLKVLGYSGSYNR
VAAFARVWQAQQMQAQQTTGRGTFVPLLFDCGEAFQFDWSEDWAVIAGVRTKLQVAHFKLSHSRAFYLRAYPLQTHEMLFDAHNHAFEVLGGVPRRGIYD
NMRTAVDRVRKGKDRDVNARFAAMVSHFLFEAEFCNPASGWEKGQVEKNVRDARHRLWQSVPAFATLDDLNAWLEQRCQALWHEIEHGKLPGTVADVWAQ
ERSALMPVPRAFDGFVEHTKRVSPTCLIHFERNRYSVPAPYANRPVSLRVYASRLVVAAEGQLLCEHQRVIERNHHGAGQTIYDWRHYLAVLQRKPGALR
NGAPFQELPPAFKRLQALLLKQRGGDREMVEILALVLHHDEQAVLAAVELALEAGAPSKTHILNVLHRLVDGRPAPAPVTSPQALRLVVEPMANVLRYDQ
LREVRHAT

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
798 bp265 aa16252422+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRHDPAIAAIVIMLRELKMHGMAQAVNELAEQGAPAFDAAQPILSQLLKAETAEREVRSVAYQLKVARFPAYRDLTGFNFSHSEVNEALVRQLHRCEFLE
DANNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEEEKAQGKAGQLAHRLAYADLVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSYRFKNSSAQQPQSKKERNTKNLSTT

 

Blast result :
Comments
ISCsp3 is 94% (transposase) and 97% (helper) aa similar to ISAlde1.
References