ISFlc1
- Family IS1595
- Group ISSod11
Isoform Synonym(s) ISFlcI
Accession number | Transposition | Origin | Host |
---|---|---|---|
FJ377709 | ND | Flavobacterium columnare | Flavobacterium columnare G4 Flavobacterium columnare ATCC 49512 Flavobacterium columnare strain C#2 |
DNA section
IS Length : 958 bp
Ends
IR Length : 21/26
IRL : TTGAGTTAATCATTTAATTTCTGTATCTTTAAGTCTTTAAAATCATGTAT
IRR : TTGAGTTATACACTTAATATCTGTTTTATATTTTTTTGATAAATTGGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAATTTAA | AAAGGAAATA | 0 | |
AGCAATAGAATT | AAAGGAAA | TATTCCAAGTAG | 8 |
DNA sequence
TTGAGTTAATCATTTAATTTCTGTATCTTTAAGTCTTTAAAATCATGTATTATGGAAGTATTTGAAGGACAAAATATACTAAACTTTATAAAAGAATTGC
CAAATGATGAATCTTGTAAGGCATATTTAGCACAAATAAAATGGAAAGATGGTTTTATTTGTATGAAGTGTGGTCATACAAAAGGATGTGAAAAATCGGG
ATATAATTACCAATGTTATAATTGTCAACATGTTGAAAGTGCCACTGCCAATACGTTGTTTCACAAGGTTAAATTTGGTTTACATAAAGCTTTTTGTATT
GTGTTCGAAATGACAACTAGTAGTAAAAGTGTATCAAGTATTCAAATGGGCAAACGTTTTGGTATTCGCCAAGGTACTGCTTGGTATTTTATGCAAAAAG
TGCGCAAAGCAATGCAAAGTAGCCAGAAATATCCTTTGTCAGAATTGGTTCATGTAGACGAATTTACTGTGGGTGGAAAAGAAGAAGCAAAACAAGGAAG
AAGTTATGATTCTAAAAAGAAAAAAGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTCTATGTGAAATCCATTGACGACTATTCT
TCAAAATCACTAACTCCAATTTTTGAAGAACATATAAGTCAAACGGCAAAGATAGTAACCGATAAATGGAGAGGGTATGAACCTCTAAAAAAACTTTACA
ATATTGAACAGCAATTAAGTAATAAAGGAAGAAATTTCAACGAATTACATATTATAATAATGCAATTGAAATCTTGGATTAGGACAATACCAACCCATGT
TAGTAAATGGCATATTCAAGCTTATTTTGATGAGTTTTGTTTTAGAATAAACCGTTCTCAATTTAAACAAGTATTTTTCATAAAACCATAGAAAGAATGC
TAAATACAAAACCAATTTATCAAAAAAATATAAAACAGATATTAAGTGTATAACTCAA
CAAATGATGAATCTTGTAAGGCATATTTAGCACAAATAAAATGGAAAGATGGTTTTATTTGTATGAAGTGTGGTCATACAAAAGGATGTGAAAAATCGGG
ATATAATTACCAATGTTATAATTGTCAACATGTTGAAAGTGCCACTGCCAATACGTTGTTTCACAAGGTTAAATTTGGTTTACATAAAGCTTTTTGTATT
GTGTTCGAAATGACAACTAGTAGTAAAAGTGTATCAAGTATTCAAATGGGCAAACGTTTTGGTATTCGCCAAGGTACTGCTTGGTATTTTATGCAAAAAG
TGCGCAAAGCAATGCAAAGTAGCCAGAAATATCCTTTGTCAGAATTGGTTCATGTAGACGAATTTACTGTGGGTGGAAAAGAAGAAGCAAAACAAGGAAG
AAGTTATGATTCTAAAAAGAAAAAAGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTCTATGTGAAATCCATTGACGACTATTCT
TCAAAATCACTAACTCCAATTTTTGAAGAACATATAAGTCAAACGGCAAAGATAGTAACCGATAAATGGAGAGGGTATGAACCTCTAAAAAAACTTTACA
ATATTGAACAGCAATTAAGTAATAAAGGAAGAAATTTCAACGAATTACATATTATAATAATGCAATTGAAATCTTGGATTAGGACAATACCAACCCATGT
TAGTAAATGGCATATTCAAGCTTATTTTGATGAGTTTTGTTTTAGAATAAACCGTTCTCAATTTAAACAAGTATTTTTCATAAAACCATAGAAAGAATGC
TAAATACAAAACCAATTTATCAAAAAAATATAAAACAGATATTAAGTGTATAACTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
840 bp | 279 aa | 52 | 891 | + | No |
Chemistry : DDE
ORF sequence :
MEVFEGQNILNFIKELPNDESCKAYLAQIKWKDGFICMKCGHTKGCEKSGYNYQCYNCQHVESATANTLFHKVKFGLHKAFCIVFEMTTSSKSVSSIQMG
KRFGIRQGTAWYFMQKVRKAMQSSQKYPLSELVHVDEFTVGGKEEAKQGRSYDSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTAK
IVTDKWRGYEPLKKLYNIEQQLSNKGRNFNELHIIIMQLKSWIRTIPTHVSKWHIQAYFDEFCFRINRSQFKQVFFIKP
KRFGIRQGTAWYFMQKVRKAMQSSQKYPLSELVHVDEFTVGGKEEAKQGRSYDSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTAK
IVTDKWRGYEPLKKLYNIEQQLSNKGRNFNELHIIIMQLKSWIRTIPTHVSKWHIQAYFDEFCFRINRSQFKQVFFIKP
Blast result :
Comments
ISFlc1 is 96% aa similar to ISFlsp2.
References
1] ISfinder submission (2016)
2] Li,N. and Nie,P. (2008) Direct GenBank submission.
2] Li,N. and Nie,P. (2008) Direct GenBank submission.