ISFlc1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s) ISFlcI
Accession numberTranspositionOriginHost
FJ377709 ND Flavobacterium columnare
Flavobacterium columnare G4
Flavobacterium columnare ATCC 49512
Flavobacterium columnare strain C#2
DNA section
IS Length : 958 bp

Ends


IR Length : 21/26

IRL : TTGAGTTAATCATTTAATTTCTGTATCTTTAAGTCTTTAAAATCATGTAT
IRR : TTGAGTTATACACTTAATATCTGTTTTATATTTTTTTGATAAATTGGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAATTTAAAAAGGAAATA0
AGCAATAGAATTAAAGGAAATATTCCAAGTAG8

DNA sequence

TTGAGTTAATCATTTAATTTCTGTATCTTTAAGTCTTTAAAATCATGTATTATGGAAGTATTTGAAGGACAAAATATACTAAACTTTATAAAAGAATTGC
CAAATGATGAATCTTGTAAGGCATATTTAGCACAAATAAAATGGAAAGATGGTTTTATTTGTATGAAGTGTGGTCATACAAAAGGATGTGAAAAATCGGG
ATATAATTACCAATGTTATAATTGTCAACATGTTGAAAGTGCCACTGCCAATACGTTGTTTCACAAGGTTAAATTTGGTTTACATAAAGCTTTTTGTATT
GTGTTCGAAATGACAACTAGTAGTAAAAGTGTATCAAGTATTCAAATGGGCAAACGTTTTGGTATTCGCCAAGGTACTGCTTGGTATTTTATGCAAAAAG
TGCGCAAAGCAATGCAAAGTAGCCAGAAATATCCTTTGTCAGAATTGGTTCATGTAGACGAATTTACTGTGGGTGGAAAAGAAGAAGCAAAACAAGGAAG
AAGTTATGATTCTAAAAAGAAAAAAGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTCTATGTGAAATCCATTGACGACTATTCT
TCAAAATCACTAACTCCAATTTTTGAAGAACATATAAGTCAAACGGCAAAGATAGTAACCGATAAATGGAGAGGGTATGAACCTCTAAAAAAACTTTACA
ATATTGAACAGCAATTAAGTAATAAAGGAAGAAATTTCAACGAATTACATATTATAATAATGCAATTGAAATCTTGGATTAGGACAATACCAACCCATGT
TAGTAAATGGCATATTCAAGCTTATTTTGATGAGTTTTGTTTTAGAATAAACCGTTCTCAATTTAAACAAGTATTTTTCATAAAACCATAGAAAGAATGC
TAAATACAAAACCAATTTATCAAAAAAATATAAAACAGATATTAAGTGTATAACTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
840 bp279 aa52891+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVFEGQNILNFIKELPNDESCKAYLAQIKWKDGFICMKCGHTKGCEKSGYNYQCYNCQHVESATANTLFHKVKFGLHKAFCIVFEMTTSSKSVSSIQMG
KRFGIRQGTAWYFMQKVRKAMQSSQKYPLSELVHVDEFTVGGKEEAKQGRSYDSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTAK
IVTDKWRGYEPLKKLYNIEQQLSNKGRNFNELHIIIMQLKSWIRTIPTHVSKWHIQAYFDEFCFRINRSQFKQVFFIKP

 

Blast result :
Comments
ISFlc1 is 96% aa similar to ISFlsp2.
References
1] ISfinder submission (2016)
2] Li,N. and Nie,P. (2008) Direct GenBank submission.