ISFlsp2

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LVEP01000038 ND Flavobacterium sp.
Flavobacterium sp. LPB0076
DNA section
IS Length : 958 bp

Ends


IR Length : 18/24

IRL : TTGAGTTAGTCATTCAATTTCTGTATATTTATACCTTTAAAATCAAGGAT
IRR : TTGAGTTATACATTTAGCATCTGTTTAATATCTTTTTGATAAATCGGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
GGACTAGGCAAATA/TAATTTAGTTAATCTAAAC7

DNA sequence

TTGAGTTAGTCATTCAATTTCTGTATATTTATACCTTTAAAATCAAGGATATGGAAGTGTTTGAAGGCCAAAGCATACTAAACTTTATAAAAGAATTGCC
AAATGATGAAACTTGCAAAGCTTATTTGGCGCAAATAAAATGGAAAGACGGTTTTAAATGTATGAAATGTGGTCATACTAAAGGATGTGAAAAATCAGGA
TATAATTATCAATGTTATAGCTGTCAACATGTGGAAAGCGCAACTACAAATACATTGTTTCATAAGGTAAAGTTTGGTTTACACAAAGCCTTTTGTATCG
TATTTGAAATGACAACCAGTAGCAAAAGTGTATCAAGTATTCAAATGGGAAAACGTTTTGATATTCGTCAAGGTACTGCTTGGTATTTTATGCAAAAAGT
ACGTAAAGCAATGCAAAGCAGTCAGAAATATCCATTGTCAGAAATAGTTCATGTAGATGAATTTACTGTGGGAGGAAAAGAAGAAGGTAAACAAGGAAGA
AGTTATGATTCTAAAAAGAAAAAGGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTTTATGTGAAATCTATTGATGACTATTCTT
CAAAATCATTAACTCCAATTTTTGAAGAACACATAAGCCAAACTGCGAATATAGTTACCGATAAATGGAGAGGATATGAACCTCTAAAAAAGCTTTATAA
TATTGAACAGAAATTAAGTGATAATGGGAAAAATTTCAAGGAACTACATATTGTGATCATGCAATTGAAATCTTGGATTAGGACAATACCTACCCATGTT
AGCAAATGGCATATTCAAGCTTATTTTGATGAATTTTGCTTTAGAATAAACCGTTCACGATTTAAAACAAGTATTTTTCATAAATCTATAGAAAGAATGA
TAAATGACAAGCCGATTTATCAAAAAGATATTAAACAGATGCTAAATGTATAACTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
903 bp300 aa51953+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVFEGQSILNFIKELPNDETCKAYLAQIKWKDGFKCMKCGHTKGCEKSGYNYQCYSCQHVESATTNTLFHKVKFGLHKAFCIVFEMTTSSKSVSSIQMG
KRFDIRQGTAWYFMQKVRKAMQSSQKYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTAN
IVTDKWRGYEPLKKLYNIEQKLSDNGKNFKELHIVIMQLKSWIRTIPTHVSKWHIQAYFDEFCFRINRSRFKTSIFHKSIERMINDKPIYQKDIKQMLNV

 

Blast result :
Comments
ISFlsp2 is 66% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Shin,S.-K., Choi,S. and Yi,H. (2016) Direct GenBank submission.