ISFlsp2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LVEP01000038 | ND | Flavobacterium sp. | Flavobacterium sp. LPB0076 |
DNA section
IS Length : 958 bp
Ends
IR Length : 18/24
IRL : TTGAGTTAGTCATTCAATTTCTGTATATTTATACCTTTAAAATCAAGGAT
IRR : TTGAGTTATACATTTAGCATCTGTTTAATATCTTTTTGATAAATCGGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGACTAGGCAAAT | A/TAATTTA | GTTAATCTAAAC | 7 |
DNA sequence
TTGAGTTAGTCATTCAATTTCTGTATATTTATACCTTTAAAATCAAGGATATGGAAGTGTTTGAAGGCCAAAGCATACTAAACTTTATAAAAGAATTGCC
AAATGATGAAACTTGCAAAGCTTATTTGGCGCAAATAAAATGGAAAGACGGTTTTAAATGTATGAAATGTGGTCATACTAAAGGATGTGAAAAATCAGGA
TATAATTATCAATGTTATAGCTGTCAACATGTGGAAAGCGCAACTACAAATACATTGTTTCATAAGGTAAAGTTTGGTTTACACAAAGCCTTTTGTATCG
TATTTGAAATGACAACCAGTAGCAAAAGTGTATCAAGTATTCAAATGGGAAAACGTTTTGATATTCGTCAAGGTACTGCTTGGTATTTTATGCAAAAAGT
ACGTAAAGCAATGCAAAGCAGTCAGAAATATCCATTGTCAGAAATAGTTCATGTAGATGAATTTACTGTGGGAGGAAAAGAAGAAGGTAAACAAGGAAGA
AGTTATGATTCTAAAAAGAAAAAGGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTTTATGTGAAATCTATTGATGACTATTCTT
CAAAATCATTAACTCCAATTTTTGAAGAACACATAAGCCAAACTGCGAATATAGTTACCGATAAATGGAGAGGATATGAACCTCTAAAAAAGCTTTATAA
TATTGAACAGAAATTAAGTGATAATGGGAAAAATTTCAAGGAACTACATATTGTGATCATGCAATTGAAATCTTGGATTAGGACAATACCTACCCATGTT
AGCAAATGGCATATTCAAGCTTATTTTGATGAATTTTGCTTTAGAATAAACCGTTCACGATTTAAAACAAGTATTTTTCATAAATCTATAGAAAGAATGA
TAAATGACAAGCCGATTTATCAAAAAGATATTAAACAGATGCTAAATGTATAACTCAA
AAATGATGAAACTTGCAAAGCTTATTTGGCGCAAATAAAATGGAAAGACGGTTTTAAATGTATGAAATGTGGTCATACTAAAGGATGTGAAAAATCAGGA
TATAATTATCAATGTTATAGCTGTCAACATGTGGAAAGCGCAACTACAAATACATTGTTTCATAAGGTAAAGTTTGGTTTACACAAAGCCTTTTGTATCG
TATTTGAAATGACAACCAGTAGCAAAAGTGTATCAAGTATTCAAATGGGAAAACGTTTTGATATTCGTCAAGGTACTGCTTGGTATTTTATGCAAAAAGT
ACGTAAAGCAATGCAAAGCAGTCAGAAATATCCATTGTCAGAAATAGTTCATGTAGATGAATTTACTGTGGGAGGAAAAGAAGAAGGTAAACAAGGAAGA
AGTTATGATTCTAAAAAGAAAAAGGCAGTAATAGCAGTAGAATTAAACCAAAAACATCAGATAAAAAGAGTTTATGTGAAATCTATTGATGACTATTCTT
CAAAATCATTAACTCCAATTTTTGAAGAACACATAAGCCAAACTGCGAATATAGTTACCGATAAATGGAGAGGATATGAACCTCTAAAAAAGCTTTATAA
TATTGAACAGAAATTAAGTGATAATGGGAAAAATTTCAAGGAACTACATATTGTGATCATGCAATTGAAATCTTGGATTAGGACAATACCTACCCATGTT
AGCAAATGGCATATTCAAGCTTATTTTGATGAATTTTGCTTTAGAATAAACCGTTCACGATTTAAAACAAGTATTTTTCATAAATCTATAGAAAGAATGA
TAAATGACAAGCCGATTTATCAAAAAGATATTAAACAGATGCTAAATGTATAACTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 51 | 953 | + | No |
Chemistry : DDE
ORF sequence :
MEVFEGQSILNFIKELPNDETCKAYLAQIKWKDGFKCMKCGHTKGCEKSGYNYQCYSCQHVESATTNTLFHKVKFGLHKAFCIVFEMTTSSKSVSSIQMG
KRFDIRQGTAWYFMQKVRKAMQSSQKYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTAN
IVTDKWRGYEPLKKLYNIEQKLSDNGKNFKELHIVIMQLKSWIRTIPTHVSKWHIQAYFDEFCFRINRSRFKTSIFHKSIERMINDKPIYQKDIKQMLNV
KRFDIRQGTAWYFMQKVRKAMQSSQKYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNQKHQIKRVYVKSIDDYSSKSLTPIFEEHISQTAN
IVTDKWRGYEPLKKLYNIEQKLSDNGKNFKELHIVIMQLKSWIRTIPTHVSKWHIQAYFDEFCFRINRSRFKTSIFHKSIERMINDKPIYQKDIKQMLNV
Blast result :
Comments
ISFlsp2 is 66% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Shin,S.-K., Choi,S. and Yi,H. (2016) Direct GenBank submission.
2] Shin,S.-K., Choi,S. and Yi,H. (2016) Direct GenBank submission.