ISPgo1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
APLF01000004 ND Psychroflexus gondwanensis
Psychroflexus gondwanensis ACAM 44
DNA section
IS Length : 959 bp

Ends


IR Length : 18/26

IRL : TTGAGTTAGTCATTTAGTTTCCGTATCTTGTTTTCAATAAAAACACTGGT
IRR : TTGAGTTACACACTTAACCTCTGTTTTACATCTTTATGATAAACCGGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGTAGTATAATTC/AAATTTATTTATACGAC8

DNA sequence

TTGAGTTAGTCATTTAGTTTCCGTATCTTGTTTTCAATAAAAACACTGGTTATGGAAGTATTCAAAGGTCAAAATATACTCAGTTTTGTAAAAGAACTAC
CAAATGATGAAGCTTGTAAAGCATATTTAGCCAAAATTAAATGGCAGGATGGTTTTAAATGTATGAAATGTGATCATACAAAAGGCTGTGAAAAAGCGGG
TTATAGATATCATTGCTACGGTTGCAATCATGTCGAAAGTGCCACAGCAAACACCTTATTTCATAAGGTTAAATTTGGTTTACAAAAGGCATTCTGCGTT
GTATTTGAAATGAGTACGAGTACTAAAAGTGTTTCCAGTATTCAAATGGGAAAGCGATTTGATATTCGACAAGGTACAGCTTGGTATTTTATGCAAAAGG
TTAGAAAATCTATGAAAAGTAGTCAAAAGTATCCTCTAACTGAAATAGTTCATGTAGATGAGTTCACTGTAGGAGGCAAAGAAGAGGGAAAGCAAGGTAG
AAGTTATGATTCAAAAAAGAAAAAGGCAGTAATAGCTGTTGAGTTGAACGTAAAACATCAAATAAAAAGAGTGTATGTAAAGTCTATAGATGATTATTCA
GCGAAATCATTAACTCCAATATTTGAAGAACATATAAGTCCTTCGGCAAAAATTGTTACCGATAAATGGAGAGGTTATGCTCCGCTTAAAAAAAGCTACG
ATATAGAGCAAAAACTAAGTAATAACGGGAGAAACTTTAAAGAACTACATGTAGTAATTATGCAGTTGAAATCTTGGTTAAGGGCTATACCAACTCATGT
TAGCAAATGGCATGTGCAAAGCTATTTCGACGAATTCTGTTTTAGAATTAATCGATCTCAATTCAAACAAAGTGTTTTTCACAAGACTATTGAAAGAATG
GTAATAGCTAAACCGGTTTATCATAAAGATGTAAAACAGAGGTTAAGTGTGTAACTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
903 bp300 aa52954+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVFKGQNILSFVKELPNDEACKAYLAKIKWQDGFKCMKCDHTKGCEKAGYRYHCYGCNHVESATANTLFHKVKFGLQKAFCVVFEMSTSTKSVSSIQMG
KRFDIRQGTAWYFMQKVRKSMKSSQKYPLTEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNVKHQIKRVYVKSIDDYSAKSLTPIFEEHISPSAK
IVTDKWRGYAPLKKSYDIEQKLSNNGRNFKELHVVIMQLKSWLRAIPTHVSKWHVQSYFDEFCFRINRSQFKQSVFHKTIERMVIAKPVYHKDVKQRLSV

 

Blast result :
Comments
ISPgo1 is 66% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Feng,S., Powell,S.M., Wilson,R. and Bowman,J.P. (2014) Genome Biol Evol 6 (1), 133-148.