ISPgo1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
APLF01000004 | ND | Psychroflexus gondwanensis | Psychroflexus gondwanensis ACAM 44 |
DNA section
IS Length : 959 bp
Ends
IR Length : 18/26
IRL : TTGAGTTAGTCATTTAGTTTCCGTATCTTGTTTTCAATAAAAACACTGGT
IRR : TTGAGTTACACACTTAACCTCTGTTTTACATCTTTATGATAAACCGGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTAGTATAAT | TC/AAATTTA | TTTATACGAC | 8 |
DNA sequence
TTGAGTTAGTCATTTAGTTTCCGTATCTTGTTTTCAATAAAAACACTGGTTATGGAAGTATTCAAAGGTCAAAATATACTCAGTTTTGTAAAAGAACTAC
CAAATGATGAAGCTTGTAAAGCATATTTAGCCAAAATTAAATGGCAGGATGGTTTTAAATGTATGAAATGTGATCATACAAAAGGCTGTGAAAAAGCGGG
TTATAGATATCATTGCTACGGTTGCAATCATGTCGAAAGTGCCACAGCAAACACCTTATTTCATAAGGTTAAATTTGGTTTACAAAAGGCATTCTGCGTT
GTATTTGAAATGAGTACGAGTACTAAAAGTGTTTCCAGTATTCAAATGGGAAAGCGATTTGATATTCGACAAGGTACAGCTTGGTATTTTATGCAAAAGG
TTAGAAAATCTATGAAAAGTAGTCAAAAGTATCCTCTAACTGAAATAGTTCATGTAGATGAGTTCACTGTAGGAGGCAAAGAAGAGGGAAAGCAAGGTAG
AAGTTATGATTCAAAAAAGAAAAAGGCAGTAATAGCTGTTGAGTTGAACGTAAAACATCAAATAAAAAGAGTGTATGTAAAGTCTATAGATGATTATTCA
GCGAAATCATTAACTCCAATATTTGAAGAACATATAAGTCCTTCGGCAAAAATTGTTACCGATAAATGGAGAGGTTATGCTCCGCTTAAAAAAAGCTACG
ATATAGAGCAAAAACTAAGTAATAACGGGAGAAACTTTAAAGAACTACATGTAGTAATTATGCAGTTGAAATCTTGGTTAAGGGCTATACCAACTCATGT
TAGCAAATGGCATGTGCAAAGCTATTTCGACGAATTCTGTTTTAGAATTAATCGATCTCAATTCAAACAAAGTGTTTTTCACAAGACTATTGAAAGAATG
GTAATAGCTAAACCGGTTTATCATAAAGATGTAAAACAGAGGTTAAGTGTGTAACTCAA
CAAATGATGAAGCTTGTAAAGCATATTTAGCCAAAATTAAATGGCAGGATGGTTTTAAATGTATGAAATGTGATCATACAAAAGGCTGTGAAAAAGCGGG
TTATAGATATCATTGCTACGGTTGCAATCATGTCGAAAGTGCCACAGCAAACACCTTATTTCATAAGGTTAAATTTGGTTTACAAAAGGCATTCTGCGTT
GTATTTGAAATGAGTACGAGTACTAAAAGTGTTTCCAGTATTCAAATGGGAAAGCGATTTGATATTCGACAAGGTACAGCTTGGTATTTTATGCAAAAGG
TTAGAAAATCTATGAAAAGTAGTCAAAAGTATCCTCTAACTGAAATAGTTCATGTAGATGAGTTCACTGTAGGAGGCAAAGAAGAGGGAAAGCAAGGTAG
AAGTTATGATTCAAAAAAGAAAAAGGCAGTAATAGCTGTTGAGTTGAACGTAAAACATCAAATAAAAAGAGTGTATGTAAAGTCTATAGATGATTATTCA
GCGAAATCATTAACTCCAATATTTGAAGAACATATAAGTCCTTCGGCAAAAATTGTTACCGATAAATGGAGAGGTTATGCTCCGCTTAAAAAAAGCTACG
ATATAGAGCAAAAACTAAGTAATAACGGGAGAAACTTTAAAGAACTACATGTAGTAATTATGCAGTTGAAATCTTGGTTAAGGGCTATACCAACTCATGT
TAGCAAATGGCATGTGCAAAGCTATTTCGACGAATTCTGTTTTAGAATTAATCGATCTCAATTCAAACAAAGTGTTTTTCACAAGACTATTGAAAGAATG
GTAATAGCTAAACCGGTTTATCATAAAGATGTAAAACAGAGGTTAAGTGTGTAACTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 52 | 954 | + | No |
Chemistry : DDE
ORF sequence :
MEVFKGQNILSFVKELPNDEACKAYLAKIKWQDGFKCMKCDHTKGCEKAGYRYHCYGCNHVESATANTLFHKVKFGLQKAFCVVFEMSTSTKSVSSIQMG
KRFDIRQGTAWYFMQKVRKSMKSSQKYPLTEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNVKHQIKRVYVKSIDDYSAKSLTPIFEEHISPSAK
IVTDKWRGYAPLKKSYDIEQKLSNNGRNFKELHVVIMQLKSWLRAIPTHVSKWHVQSYFDEFCFRINRSQFKQSVFHKTIERMVIAKPVYHKDVKQRLSV
KRFDIRQGTAWYFMQKVRKSMKSSQKYPLTEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELNVKHQIKRVYVKSIDDYSAKSLTPIFEEHISPSAK
IVTDKWRGYAPLKKSYDIEQKLSNNGRNFKELHVVIMQLKSWLRAIPTHVSKWHVQSYFDEFCFRINRSQFKQSVFHKTIERMVIAKPVYHKDVKQRLSV
Blast result :
Comments
ISPgo1 is 66% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Feng,S., Powell,S.M., Wilson,R. and Bowman,J.P. (2014) Genome Biol Evol 6 (1), 133-148.
2] Feng,S., Powell,S.M., Wilson,R. and Bowman,J.P. (2014) Genome Biol Evol 6 (1), 133-148.