ISGal1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LZRN01000032 | ND | Gelidibacter algens | Gelidibacter algens ACAM 536 |
DNA section
IS Length : 959 bp
Ends
IR Length : 20/26
IRL : TTGAGTTAATCATTTAAGTTCTGTATCTTGCGCCCAATAAATATAATGAT
IRR : TTGAGTTACACACTTACGTGCTGTTTTATTACTTGTTGATATATCGGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTAATTTGC | TTAA | AATAAAACAC | 4 |
DNA sequence
TTGAGTTAATCATTTAAGTTCTGTATCTTGCGCCCAATAAATATAATGATTATGGATGTGTTTAAGGGTCAAAATATACTGAACTTTGTAAAAGAATTGC
CGGATGATGATTCCTGCAAGGCTTATTTGGCTAAAATAAAATGGCAGGATGGTTTTAAATGTATGAAATGTGGACACACCAAAGGATGTGCAAAAGCGGG
ATACACCTATCAATGTTATAACTGTCAGCATGTGGAGAGCTCCACGGCAAATACATTGTTCCACAAAGTTAAGTTCGGGCTCCATAAGGCATTCTGCATC
GTGTTCGAGATGGCCACCAGCACGAAGAGCGTGTCAAGTGTCCAGATGGGGAAGCGCTTCGATGTCCGACAGGGAACTGCCTGGTATTTTATGCAGAAGG
TGAGGATAGCCATGCAGAGCAGCCAGCAATATCCATTGTCGGAAATTGTCCATGTGGATGAATTCACGGTTGGTGGAAAAGAAGAGGGCAAACAGGGCCG
GAGCTATGACTCCAAGAAGAAAAAGGCAGTGATAGCGGTGGAGCTAGACAAAAAGCACAAAATCAAAAGGGTCTACGTAAGATCGATCGAGGATTATTCA
GCGAGATCCCTGACGCCAATCTTCGAAGAGCATATCAGTACGACCGCCAAAGTGGTAACAGATAAATGGCGAGGGTATGCACCGTTGATGAAAGACTATA
ATATTGAACAGAAATACAGTGCAGGCGGCAAGAACTTCAAGGAAATGCATATTGTTATAATGCAGCTGAAATCTTGGTTGAGGGCAATTCCAACACATGT
AAGCAAATGGCATGTACAGAGATATTTCGATGAGTTCTGTTTTAGGATAAACAGGTCACAGTTCAAAGAAACCATTTTTCACAAAACCATTGAAAGAATG
GTCGCCAAAAAACCGATATATCAACAAGTAATAAAACAGCACGTAAGTGTGTAACTCAA
CGGATGATGATTCCTGCAAGGCTTATTTGGCTAAAATAAAATGGCAGGATGGTTTTAAATGTATGAAATGTGGACACACCAAAGGATGTGCAAAAGCGGG
ATACACCTATCAATGTTATAACTGTCAGCATGTGGAGAGCTCCACGGCAAATACATTGTTCCACAAAGTTAAGTTCGGGCTCCATAAGGCATTCTGCATC
GTGTTCGAGATGGCCACCAGCACGAAGAGCGTGTCAAGTGTCCAGATGGGGAAGCGCTTCGATGTCCGACAGGGAACTGCCTGGTATTTTATGCAGAAGG
TGAGGATAGCCATGCAGAGCAGCCAGCAATATCCATTGTCGGAAATTGTCCATGTGGATGAATTCACGGTTGGTGGAAAAGAAGAGGGCAAACAGGGCCG
GAGCTATGACTCCAAGAAGAAAAAGGCAGTGATAGCGGTGGAGCTAGACAAAAAGCACAAAATCAAAAGGGTCTACGTAAGATCGATCGAGGATTATTCA
GCGAGATCCCTGACGCCAATCTTCGAAGAGCATATCAGTACGACCGCCAAAGTGGTAACAGATAAATGGCGAGGGTATGCACCGTTGATGAAAGACTATA
ATATTGAACAGAAATACAGTGCAGGCGGCAAGAACTTCAAGGAAATGCATATTGTTATAATGCAGCTGAAATCTTGGTTGAGGGCAATTCCAACACATGT
AAGCAAATGGCATGTACAGAGATATTTCGATGAGTTCTGTTTTAGGATAAACAGGTCACAGTTCAAAGAAACCATTTTTCACAAAACCATTGAAAGAATG
GTCGCCAAAAAACCGATATATCAACAAGTAATAAAACAGCACGTAAGTGTGTAACTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
903 bp | 300 aa | 52 | 954 | + | No |
Chemistry : DDE
ORF sequence :
MDVFKGQNILNFVKELPDDDSCKAYLAKIKWQDGFKCMKCGHTKGCAKAGYTYQCYNCQHVESSTANTLFHKVKFGLHKAFCIVFEMATSTKSVSSVQMG
KRFDVRQGTAWYFMQKVRIAMQSSQQYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELDKKHKIKRVYVRSIEDYSARSLTPIFEEHISTTAK
VVTDKWRGYAPLMKDYNIEQKYSAGGKNFKEMHIVIMQLKSWLRAIPTHVSKWHVQRYFDEFCFRINRSQFKETIFHKTIERMVAKKPIYQQVIKQHVSV
KRFDVRQGTAWYFMQKVRIAMQSSQQYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELDKKHKIKRVYVRSIEDYSARSLTPIFEEHISTTAK
VVTDKWRGYAPLMKDYNIEQKYSAGGKNFKEMHIVIMQLKSWLRAIPTHVSKWHVQRYFDEFCFRINRSQFKETIFHKTIERMVAKKPIYQQVIKQHVSV
Blast result :
Comments
ISGal1 is 68% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Bowman,J.P. (2016) Direct GenBank submission.
2] Bowman,J.P. (2016) Direct GenBank submission.