ISGal1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LZRN01000032 ND Gelidibacter algens
Gelidibacter algens ACAM 536
DNA section
IS Length : 959 bp

Ends


IR Length : 20/26

IRL : TTGAGTTAATCATTTAAGTTCTGTATCTTGCGCCCAATAAATATAATGAT
IRR : TTGAGTTACACACTTACGTGCTGTTTTATTACTTGTTGATATATCGGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTAATTTGCTTAAAATAAAACAC4

DNA sequence

TTGAGTTAATCATTTAAGTTCTGTATCTTGCGCCCAATAAATATAATGATTATGGATGTGTTTAAGGGTCAAAATATACTGAACTTTGTAAAAGAATTGC
CGGATGATGATTCCTGCAAGGCTTATTTGGCTAAAATAAAATGGCAGGATGGTTTTAAATGTATGAAATGTGGACACACCAAAGGATGTGCAAAAGCGGG
ATACACCTATCAATGTTATAACTGTCAGCATGTGGAGAGCTCCACGGCAAATACATTGTTCCACAAAGTTAAGTTCGGGCTCCATAAGGCATTCTGCATC
GTGTTCGAGATGGCCACCAGCACGAAGAGCGTGTCAAGTGTCCAGATGGGGAAGCGCTTCGATGTCCGACAGGGAACTGCCTGGTATTTTATGCAGAAGG
TGAGGATAGCCATGCAGAGCAGCCAGCAATATCCATTGTCGGAAATTGTCCATGTGGATGAATTCACGGTTGGTGGAAAAGAAGAGGGCAAACAGGGCCG
GAGCTATGACTCCAAGAAGAAAAAGGCAGTGATAGCGGTGGAGCTAGACAAAAAGCACAAAATCAAAAGGGTCTACGTAAGATCGATCGAGGATTATTCA
GCGAGATCCCTGACGCCAATCTTCGAAGAGCATATCAGTACGACCGCCAAAGTGGTAACAGATAAATGGCGAGGGTATGCACCGTTGATGAAAGACTATA
ATATTGAACAGAAATACAGTGCAGGCGGCAAGAACTTCAAGGAAATGCATATTGTTATAATGCAGCTGAAATCTTGGTTGAGGGCAATTCCAACACATGT
AAGCAAATGGCATGTACAGAGATATTTCGATGAGTTCTGTTTTAGGATAAACAGGTCACAGTTCAAAGAAACCATTTTTCACAAAACCATTGAAAGAATG
GTCGCCAAAAAACCGATATATCAACAAGTAATAAAACAGCACGTAAGTGTGTAACTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
903 bp300 aa52954+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVFKGQNILNFVKELPDDDSCKAYLAKIKWQDGFKCMKCGHTKGCAKAGYTYQCYNCQHVESSTANTLFHKVKFGLHKAFCIVFEMATSTKSVSSVQMG
KRFDVRQGTAWYFMQKVRIAMQSSQQYPLSEIVHVDEFTVGGKEEGKQGRSYDSKKKKAVIAVELDKKHKIKRVYVRSIEDYSARSLTPIFEEHISTTAK
VVTDKWRGYAPLMKDYNIEQKYSAGGKNFKEMHIVIMQLKSWLRAIPTHVSKWHVQRYFDEFCFRINRSQFKETIFHKTIERMVAKKPIYQQVIKQHVSV

 

Blast result :
Comments
ISGal1 is 68% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Bowman,J.P. (2016) Direct GenBank submission.