ISSko1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LDJH01000034 | ND | Stenotrophomonas koreensis | Stenotrophomonas koreensis DSM 17805 |
DNA section
IS Length : 1521 bp
Ends
IR Length : 11
IRL : gaatCGAATGGACTCCCCGCGTCACCACGCCGCGTCAATGCGCAAGCTGA
IRR : ----tgtATGGACTCCCCcgtcaaatcctgacggcacgatgttgtgaagc
Comments : Not located at the termini of the IS.
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGGATGATC | NNNN | 0 |
DNA sequence
GAATCGAATGGACTCCCCGCGTCACCACGCCGCGTCAATGCGCAAGCTGAAACTGTTGCCCATCAGTACGCGGAATTTACGCCAGGAGCCGGACATGCAC
GCTACCACCAAATTCGCAGGTAATGAATCGTCGGTTGCCGTTACCTTGGCGGTAGACCTGGCCAAGGACGTTTTTGAACTGGCATTTGCCGATGCGGCAG
GACGTATCGTCGAGCGCAGGCGGCTCAAGCGTGGTCCGTTTGCGCAATGCCTGGTCAATCGCGCACCGCTGAGCATTGTCATGGAGGCCTGCGGCTCGGC
GCATGCGTGGGCGCGGCGCTTCATGCGGCTGGGACACACGGTGAAGCTGCTGCCGGCGCAGCATGTACGCCCCTACGTCCGGCGCAACAAGACCGACCGC
GCCGATGCCGCCGGCCTGCTGGAAGCTGCGCGCTGTGGCGATATCCGCCCAGTGCCGGTAAAGACCACGGGGCAGCAGGGTACGCAGGGCCTGCATCGCA
TCCGCGAACACCACAAGGCCGAACGCACGGCCGCGATCAATCTGGTGCGCGGTCTGTTGCGCGAGTTTGGTACTGCCATTCCTGCCGGGGCCGACAAAAT
ACGTCCAGCCGTGCTGGCTGCCCTGGAGGATGGCGACAATGATCTTCCGATGCCGCTGCGCCATGCCCTGGCTGGCCTGCTGCAGCGGATCGCCTCCTGC
GAGGAGGCGATGGCCGCCATCGAGAAGCAGCTGGCCGACATCGCCAGGGACGATACCCGCTGCCAACGTTTGATGGCTGCCAACGGTGTCGGTTTGATTA
CCGCCACCGCGATGAGTGCGGGCATCGGCGACTTCGCCCGGTTTCCCAGTGGCAGGCACTTTGCCAGCGCACTGGGGCTGACACCACGCGAATACTCCAG
CGGCGGCAGCCGCAAGCTCGGGCGCATCAGCAAGCGTGGCGATGTCTACCTGCGCACGCTGCTGATCCATGGCGCACGCTCGGCATTGATCACCGCATGC
ATGGCGCGCAAGCGCGGCCAGACGCTGGATCGCACCCAGCAATGGGCGCTGGCACTGGCTGAGCGCAAAGGCCACAACAAAGCCGTGGTGGCCCTGGCCA
ACAAGACCGCACGGCGGTTATGGGCCGCCGAACACCATGGCGTGGGCTTTGATCCAGACCACCTCAGCCAGCGCGAACAACGCGCCGGCTGATCCCGATT
CCCCTCGACCGTTTTACTGCAACTACCGTTGAACCGTTCTGCTGTTGCATCGCCTCAACTCATGCAAGCGTGTCGGCCCCCGAAGCAGCCAAGCCGATAA
CAATTCTGATCCTTCGTGATCGCTTGAACGTCTGGCCCTGCTCCGCGGATTCCATGATGGCTCGGGAAAGCCCACCACAAAGCCGAATACACGAATGCAA
CCGCTCCCGTTTGCCGGGTTGAAGAAAAAGTTTCAGCAGGATGGAAAATGAAGAATCACATGCCGTGAAGCTGAAGCTTCACAACATCGTGCCGTCAGGA
TTTGACGGGGGAGTCCATACA
GCTACCACCAAATTCGCAGGTAATGAATCGTCGGTTGCCGTTACCTTGGCGGTAGACCTGGCCAAGGACGTTTTTGAACTGGCATTTGCCGATGCGGCAG
GACGTATCGTCGAGCGCAGGCGGCTCAAGCGTGGTCCGTTTGCGCAATGCCTGGTCAATCGCGCACCGCTGAGCATTGTCATGGAGGCCTGCGGCTCGGC
GCATGCGTGGGCGCGGCGCTTCATGCGGCTGGGACACACGGTGAAGCTGCTGCCGGCGCAGCATGTACGCCCCTACGTCCGGCGCAACAAGACCGACCGC
GCCGATGCCGCCGGCCTGCTGGAAGCTGCGCGCTGTGGCGATATCCGCCCAGTGCCGGTAAAGACCACGGGGCAGCAGGGTACGCAGGGCCTGCATCGCA
TCCGCGAACACCACAAGGCCGAACGCACGGCCGCGATCAATCTGGTGCGCGGTCTGTTGCGCGAGTTTGGTACTGCCATTCCTGCCGGGGCCGACAAAAT
ACGTCCAGCCGTGCTGGCTGCCCTGGAGGATGGCGACAATGATCTTCCGATGCCGCTGCGCCATGCCCTGGCTGGCCTGCTGCAGCGGATCGCCTCCTGC
GAGGAGGCGATGGCCGCCATCGAGAAGCAGCTGGCCGACATCGCCAGGGACGATACCCGCTGCCAACGTTTGATGGCTGCCAACGGTGTCGGTTTGATTA
CCGCCACCGCGATGAGTGCGGGCATCGGCGACTTCGCCCGGTTTCCCAGTGGCAGGCACTTTGCCAGCGCACTGGGGCTGACACCACGCGAATACTCCAG
CGGCGGCAGCCGCAAGCTCGGGCGCATCAGCAAGCGTGGCGATGTCTACCTGCGCACGCTGCTGATCCATGGCGCACGCTCGGCATTGATCACCGCATGC
ATGGCGCGCAAGCGCGGCCAGACGCTGGATCGCACCCAGCAATGGGCGCTGGCACTGGCTGAGCGCAAAGGCCACAACAAAGCCGTGGTGGCCCTGGCCA
ACAAGACCGCACGGCGGTTATGGGCCGCCGAACACCATGGCGTGGGCTTTGATCCAGACCACCTCAGCCAGCGCGAACAACGCGCCGGCTGATCCCGATT
CCCCTCGACCGTTTTACTGCAACTACCGTTGAACCGTTCTGCTGTTGCATCGCCTCAACTCATGCAAGCGTGTCGGCCCCCGAAGCAGCCAAGCCGATAA
CAATTCTGATCCTTCGTGATCGCTTGAACGTCTGGCCCTGCTCCGCGGATTCCATGATGGCTCGGGAAAGCCCACCACAAAGCCGAATACACGAATGCAA
CCGCTCCCGTTTGCCGGGTTGAAGAAAAAGTTTCAGCAGGATGGAAAATGAAGAATCACATGCCGTGAAGCTGAAGCTTCACAACATCGTGCCGTCAGGA
TTTGACGGGGGAGTCCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1098 bp | 365 aa | 95 | 1192 | + | No |
Chemistry : DEDD
ORF sequence :
MHATTKFAGNESSVAVTLAVDLAKDVFELAFADAAGRIVERRRLKRGPFAQCLVNRAPLSIVMEACGSAHAWARRFMRLGHTVKLLPAQHVRPYVRRNKT
DRADAAGLLEAARCGDIRPVPVKTTGQQGTQGLHRIREHHKAERTAAINLVRGLLREFGTAIPAGADKIRPAVLAALEDGDNDLPMPLRHALAGLLQRIA
SCEEAMAAIEKQLADIARDDTRCQRLMAANGVGLITATAMSAGIGDFARFPSGRHFASALGLTPREYSSGGSRKLGRISKRGDVYLRTLLIHGARSALIT
ACMARKRGQTLDRTQQWALALAERKGHNKAVVALANKTARRLWAAEHHGVGFDPDHLSQREQRAG
DRADAAGLLEAARCGDIRPVPVKTTGQQGTQGLHRIREHHKAERTAAINLVRGLLREFGTAIPAGADKIRPAVLAALEDGDNDLPMPLRHALAGLLQRIA
SCEEAMAAIEKQLADIARDDTRCQRLMAANGVGLITATAMSAGIGDFARFPSGRHFASALGLTPREYSSGGSRKLGRISKRGDVYLRTLLIHGARSALIT
ACMARKRGQTLDRTQQWALALAERKGHNKAVVALANKTARRLWAAEHHGVGFDPDHLSQREQRAG
Blast result :
Comments
ISSko1 is 75% aa similar to ISPa71.
References