ISSko1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LDJH01000034 ND Stenotrophomonas koreensis
Stenotrophomonas koreensis DSM 17805
DNA section
IS Length : 1521 bp

Ends


IR Length : 11

IRL : gaatCGAATGGACTCCCCGCGTCACCACGCCGCGTCAATGCGCAAGCTGA
IRR : ----tgtATGGACTCCCCcgtcaaatcctgacggcacgatgttgtgaagc

Comments : Not located at the termini of the IS.

Insertion site


Left flankDirect repeatRight flankDR Length
TTGGATGATCNNNN0

DNA sequence

GAATCGAATGGACTCCCCGCGTCACCACGCCGCGTCAATGCGCAAGCTGAAACTGTTGCCCATCAGTACGCGGAATTTACGCCAGGAGCCGGACATGCAC
GCTACCACCAAATTCGCAGGTAATGAATCGTCGGTTGCCGTTACCTTGGCGGTAGACCTGGCCAAGGACGTTTTTGAACTGGCATTTGCCGATGCGGCAG
GACGTATCGTCGAGCGCAGGCGGCTCAAGCGTGGTCCGTTTGCGCAATGCCTGGTCAATCGCGCACCGCTGAGCATTGTCATGGAGGCCTGCGGCTCGGC
GCATGCGTGGGCGCGGCGCTTCATGCGGCTGGGACACACGGTGAAGCTGCTGCCGGCGCAGCATGTACGCCCCTACGTCCGGCGCAACAAGACCGACCGC
GCCGATGCCGCCGGCCTGCTGGAAGCTGCGCGCTGTGGCGATATCCGCCCAGTGCCGGTAAAGACCACGGGGCAGCAGGGTACGCAGGGCCTGCATCGCA
TCCGCGAACACCACAAGGCCGAACGCACGGCCGCGATCAATCTGGTGCGCGGTCTGTTGCGCGAGTTTGGTACTGCCATTCCTGCCGGGGCCGACAAAAT
ACGTCCAGCCGTGCTGGCTGCCCTGGAGGATGGCGACAATGATCTTCCGATGCCGCTGCGCCATGCCCTGGCTGGCCTGCTGCAGCGGATCGCCTCCTGC
GAGGAGGCGATGGCCGCCATCGAGAAGCAGCTGGCCGACATCGCCAGGGACGATACCCGCTGCCAACGTTTGATGGCTGCCAACGGTGTCGGTTTGATTA
CCGCCACCGCGATGAGTGCGGGCATCGGCGACTTCGCCCGGTTTCCCAGTGGCAGGCACTTTGCCAGCGCACTGGGGCTGACACCACGCGAATACTCCAG
CGGCGGCAGCCGCAAGCTCGGGCGCATCAGCAAGCGTGGCGATGTCTACCTGCGCACGCTGCTGATCCATGGCGCACGCTCGGCATTGATCACCGCATGC
ATGGCGCGCAAGCGCGGCCAGACGCTGGATCGCACCCAGCAATGGGCGCTGGCACTGGCTGAGCGCAAAGGCCACAACAAAGCCGTGGTGGCCCTGGCCA
ACAAGACCGCACGGCGGTTATGGGCCGCCGAACACCATGGCGTGGGCTTTGATCCAGACCACCTCAGCCAGCGCGAACAACGCGCCGGCTGATCCCGATT
CCCCTCGACCGTTTTACTGCAACTACCGTTGAACCGTTCTGCTGTTGCATCGCCTCAACTCATGCAAGCGTGTCGGCCCCCGAAGCAGCCAAGCCGATAA
CAATTCTGATCCTTCGTGATCGCTTGAACGTCTGGCCCTGCTCCGCGGATTCCATGATGGCTCGGGAAAGCCCACCACAAAGCCGAATACACGAATGCAA
CCGCTCCCGTTTGCCGGGTTGAAGAAAAAGTTTCAGCAGGATGGAAAATGAAGAATCACATGCCGTGAAGCTGAAGCTTCACAACATCGTGCCGTCAGGA
TTTGACGGGGGAGTCCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1098 bp365 aa951192+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MHATTKFAGNESSVAVTLAVDLAKDVFELAFADAAGRIVERRRLKRGPFAQCLVNRAPLSIVMEACGSAHAWARRFMRLGHTVKLLPAQHVRPYVRRNKT
DRADAAGLLEAARCGDIRPVPVKTTGQQGTQGLHRIREHHKAERTAAINLVRGLLREFGTAIPAGADKIRPAVLAALEDGDNDLPMPLRHALAGLLQRIA
SCEEAMAAIEKQLADIARDDTRCQRLMAANGVGLITATAMSAGIGDFARFPSGRHFASALGLTPREYSSGGSRKLGRISKRGDVYLRTLLIHGARSALIT
ACMARKRGQTLDRTQQWALALAERKGHNKAVVALANKTARRLWAAEHHGVGFDPDHLSQREQRAG

 

Blast result :
Comments
ISSko1 is 75% aa similar to ISPa71.
References