ISBaba1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MEOB01000033 ND Bacteroidetes bacterium
Bacteroidetes bacterium GWE2_42_39
DNA section
IS Length : 968 bp

Ends


IR Length : 20/23

IRL : TTGAATTAGGCATTTTGTAAATACAATAGAAATGTCTATTTTAGGGGAAA
IRR : TTGAATTAGGCATTTAGATAATAATTGGTTTTTTATACGGGAAAGGATCT

Insertion site


Left flankDirect repeatRight flankDR Length
TGGAGAGAATAAAGAAAAAATAAGAAACT8

DNA sequence

TTGAATTAGGCATTTTGTAAATACAATAGAAATGTCTATTTTAGGGGAAAAGATTATTGAAATGGAGAACAAATTTAGAAGTCTTATTATTTTTGAATTT
CAGGAACGTTTCCCTGACGAAGATTCTTGCTATCAATATTTGACAGAGCTAAAATGGTCAACCGGTTTTGTTTGCCCCAACTGTGGACACACCCACTATT
GCAATGGGAAACGCAAATTCGACAGGCAGTGTACCAGTTGCCACCGAATCGCTTCCCCGACCAGCGGGACATTGTTTCACCAGTTGAAATTTTCGGTATT
AAAAGCCTTTTACATTGTCTATTATGTAAGCACAAGTAAAAAGGGGATCAGCAGTACCGAACTGAGCAGAAAGCTTGGGTTAAGACAAAAAACCTGCTGG
AAGTTCAAAGTCAAGGTAATGAAAGCCATGGAAAGCAGCGGCAACCACAAAATTAATGGCAATGCAGAAGTAGACGAAACTGTTATTGGCGGTCAGGAAG
AGGGGGTTGTGGGGAGAAAGAACAGAAAAAAGAAGCTGGTTGTATTTGCCATTGAGCGCAATGGCAAAGGTGTTAGCCGTATGTATGGTAAGGTTATTAA
ACAGAGCAGTTCAAAAGAACTTGGAGGATTTATGAAAACAACTATCGACCTAAATGCACAAATAAAAACGGATAAATGGCGTGGGTATTCCCCTCTGGCA
AAAGATTTCAAGAACCTGTCACAGGTTAATTCCGGGGAAAAAGGTGGAAACTTCCCTGATTTACACAGGTGTATTATGGGATTCAAAGGCTGGCTTCGCG
GGATGCACCATCATGTTGAAAATCTGCAAGCCTATATTGATGAATACTGCTACCGGTTTAACCGAAGCAATATGAAGGAAGGAATTTTTGACAACCTCTT
GACAAGAATGGTTAAAGCAGATCCTTTCCCGTATAAAAAACCAATTATTATCTAAATGCCTAATTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
924 bp307 aa32955+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSILGEKIIEMENKFRSLIIFEFQERFPDEDSCYQYLTELKWSTGFVCPNCGHTHYCNGKRKFDRQCTSCHRIASPTSGTLFHQLKFSVLKAFYIVYYVS
TSKKGISSTELSRKLGLRQKTCWKFKVKVMKAMESSGNHKINGNAEVDETVIGGQEEGVVGRKNRKKKLVVFAIERNGKGVSRMYGKVIKQSSSKELGGF
MKTTIDLNAQIKTDKWRGYSPLAKDFKNLSQVNSGEKGGNFPDLHRCIMGFKGWLRGMHHHVENLQAYIDEYCYRFNRSNMKEGIFDNLLTRMVKADPFP
YKKPIII

 

Blast result :
Comments
ISBaba1 is 65% aa similar to ISPrsp1.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.