ISBaba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MEOB01000033 | ND | Bacteroidetes bacterium | Bacteroidetes bacterium GWE2_42_39 |
DNA section
IS Length : 968 bp
Ends
IR Length : 20/23
IRL : TTGAATTAGGCATTTTGTAAATACAATAGAAATGTCTATTTTAGGGGAAA
IRR : TTGAATTAGGCATTTAGATAATAATTGGTTTTTTATACGGGAAAGGATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGAGAGAATA | AAGAAAAA | ATAAGAAACT | 8 |
DNA sequence
TTGAATTAGGCATTTTGTAAATACAATAGAAATGTCTATTTTAGGGGAAAAGATTATTGAAATGGAGAACAAATTTAGAAGTCTTATTATTTTTGAATTT
CAGGAACGTTTCCCTGACGAAGATTCTTGCTATCAATATTTGACAGAGCTAAAATGGTCAACCGGTTTTGTTTGCCCCAACTGTGGACACACCCACTATT
GCAATGGGAAACGCAAATTCGACAGGCAGTGTACCAGTTGCCACCGAATCGCTTCCCCGACCAGCGGGACATTGTTTCACCAGTTGAAATTTTCGGTATT
AAAAGCCTTTTACATTGTCTATTATGTAAGCACAAGTAAAAAGGGGATCAGCAGTACCGAACTGAGCAGAAAGCTTGGGTTAAGACAAAAAACCTGCTGG
AAGTTCAAAGTCAAGGTAATGAAAGCCATGGAAAGCAGCGGCAACCACAAAATTAATGGCAATGCAGAAGTAGACGAAACTGTTATTGGCGGTCAGGAAG
AGGGGGTTGTGGGGAGAAAGAACAGAAAAAAGAAGCTGGTTGTATTTGCCATTGAGCGCAATGGCAAAGGTGTTAGCCGTATGTATGGTAAGGTTATTAA
ACAGAGCAGTTCAAAAGAACTTGGAGGATTTATGAAAACAACTATCGACCTAAATGCACAAATAAAAACGGATAAATGGCGTGGGTATTCCCCTCTGGCA
AAAGATTTCAAGAACCTGTCACAGGTTAATTCCGGGGAAAAAGGTGGAAACTTCCCTGATTTACACAGGTGTATTATGGGATTCAAAGGCTGGCTTCGCG
GGATGCACCATCATGTTGAAAATCTGCAAGCCTATATTGATGAATACTGCTACCGGTTTAACCGAAGCAATATGAAGGAAGGAATTTTTGACAACCTCTT
GACAAGAATGGTTAAAGCAGATCCTTTCCCGTATAAAAAACCAATTATTATCTAAATGCCTAATTCAA
CAGGAACGTTTCCCTGACGAAGATTCTTGCTATCAATATTTGACAGAGCTAAAATGGTCAACCGGTTTTGTTTGCCCCAACTGTGGACACACCCACTATT
GCAATGGGAAACGCAAATTCGACAGGCAGTGTACCAGTTGCCACCGAATCGCTTCCCCGACCAGCGGGACATTGTTTCACCAGTTGAAATTTTCGGTATT
AAAAGCCTTTTACATTGTCTATTATGTAAGCACAAGTAAAAAGGGGATCAGCAGTACCGAACTGAGCAGAAAGCTTGGGTTAAGACAAAAAACCTGCTGG
AAGTTCAAAGTCAAGGTAATGAAAGCCATGGAAAGCAGCGGCAACCACAAAATTAATGGCAATGCAGAAGTAGACGAAACTGTTATTGGCGGTCAGGAAG
AGGGGGTTGTGGGGAGAAAGAACAGAAAAAAGAAGCTGGTTGTATTTGCCATTGAGCGCAATGGCAAAGGTGTTAGCCGTATGTATGGTAAGGTTATTAA
ACAGAGCAGTTCAAAAGAACTTGGAGGATTTATGAAAACAACTATCGACCTAAATGCACAAATAAAAACGGATAAATGGCGTGGGTATTCCCCTCTGGCA
AAAGATTTCAAGAACCTGTCACAGGTTAATTCCGGGGAAAAAGGTGGAAACTTCCCTGATTTACACAGGTGTATTATGGGATTCAAAGGCTGGCTTCGCG
GGATGCACCATCATGTTGAAAATCTGCAAGCCTATATTGATGAATACTGCTACCGGTTTAACCGAAGCAATATGAAGGAAGGAATTTTTGACAACCTCTT
GACAAGAATGGTTAAAGCAGATCCTTTCCCGTATAAAAAACCAATTATTATCTAAATGCCTAATTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 32 | 955 | + | No |
Chemistry : DDE
ORF sequence :
MSILGEKIIEMENKFRSLIIFEFQERFPDEDSCYQYLTELKWSTGFVCPNCGHTHYCNGKRKFDRQCTSCHRIASPTSGTLFHQLKFSVLKAFYIVYYVS
TSKKGISSTELSRKLGLRQKTCWKFKVKVMKAMESSGNHKINGNAEVDETVIGGQEEGVVGRKNRKKKLVVFAIERNGKGVSRMYGKVIKQSSSKELGGF
MKTTIDLNAQIKTDKWRGYSPLAKDFKNLSQVNSGEKGGNFPDLHRCIMGFKGWLRGMHHHVENLQAYIDEYCYRFNRSNMKEGIFDNLLTRMVKADPFP
YKKPIII
TSKKGISSTELSRKLGLRQKTCWKFKVKVMKAMESSGNHKINGNAEVDETVIGGQEEGVVGRKNRKKKLVVFAIERNGKGVSRMYGKVIKQSSSKELGGF
MKTTIDLNAQIKTDKWRGYSPLAKDFKNLSQVNSGEKGGNFPDLHRCIMGFKGWLRGMHHHVENLQAYIDEYCYRFNRSNMKEGIFDNLLTRMVKADPFP
YKKPIII
Blast result :
Comments
ISBaba1 is 65% aa similar to ISPrsp1.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.