ISPemu1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LT608328 ND Petrimonas mucosa
Petrimonas mucosa ING2-E5A
DNA section
IS Length : 995 bp

Ends


IR Length : 21/25

IRL : TCGGTATAGGCGCTTAAGTCGCTGTTAATTTAGAAATAACTGCTACCTTT
IRR : TCGGTATAGGCGGTTAGACCGCTGTAGTTATATTACTTCTATTTAACCTT

Insertion site


Left flankDirect repeatRight flankDR Length
GCATTCTATTTTTAAGAATATATCCCAG8
CGGAACACTCTTTTATTTACAAATTTATTTTCAACAAGA0

DNA sequence

TCGGTATAGGCGCTTAAGTCGCTGTTAATTTAGAAATAACTGCTACCTTTGTAGCATGGGATTTAGAGAAAAGTATACGGGGGTGAATTCAATAGAATTT
AATAGGTATTTTCAGAGCGACGAAGATTGTTTTCGTTATTTGTCTGCAATAAAATGGTCATCTGAAAGTCCGTACAAATGCAAGAAATGCGGTCATCTGA
AGTATGGAAAAGGCAAAAAGTCATATTCACGCCGTTGCGCCAATTGTAATTACGATGAAAGTCCAACGGCAGGAACGATGTTTGACAAGATAAAATTTCC
ATTACTAATAGCGTTTCACATATGCTTTAAGATCAGTACAAAAAAGAAAGGAATGTCTTCCATGGAATTGTCAGAAGAGTTTGGATTGCGGCAGAAAACA
GTTTGGGAATTTAAGTGGAAAATCCAACAAGCAATGACGAGCAGCCGTAAAAACCAATTATGCGGCAAAGTTCAAGTGGATGAATTTCTGATTGGCGAAT
ACGAGGAAGGGAAAGTGGGGCGTAGTGGCGAGAGCAAAAAGAAGTTAGTTATAGTTGCACTTGAAATTCTGGAAGATAAAGGTAGTGTTGGGCGTGCTTA
TGCACAAGTAATTGATCGTGCTTCAAGCAAAGAATTCAGACCGTTTTTTGAGACATATATTAGCAAAGAAGCGCACGTTATTACTGACGTTTGGAAAGGA
TATTTGCCATTGAAAAAGGACTATCCAAACTTAGAACAAATACCTTCAGACAAGGGAAAGGGAATGCAGCAACTGCATATTCACATAATGAACATCCAGG
GATGGTTGCGAGGGATACACCACCATTGCTCAAAGCAGCGGCTGCAAGGTTATCTCGATGAGTACCATTTCAGGTATAACAGGAGGTCAATGATGGGGTC
AATCTTCGATTTACTCCTTAGGAAGATGGTCTTCAGTGAACCTATAAGGTTAAATAGAAGTAATATAACTACAGCGGTCTAACCGCCTATACCGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa56982+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGFREKYTGVNSIEFNRYFQSDEDCFRYLSAIKWSSESPYKCKKCGHLKYGKGKKSYSRRCANCNYDESPTAGTMFDKIKFPLLIAFHICFKISTKKKGM
SSMELSEEFGLRQKTVWEFKWKIQQAMTSSRKNQLCGKVQVDEFLIGEYEEGKVGRSGESKKKLVIVALEILEDKGSVGRAYAQVIDRASSKEFRPFFET
YISKEAHVITDVWKGYLPLKKDYPNLEQIPSDKGKGMQQLHIHIMNIQGWLRGIHHHCSKQRLQGYLDEYHFRYNRRSMMGSIFDLLLRKMVFSEPIRLN
RSNITTAV

 

Blast result :
Comments
ISPemu1 is 78% aa similar to ISPrsp1.
References
1] ISfinder annotation (2016)
2] Wibberg,D. (2016) Direct GenBank submission.