ISBasa1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002530 ND Bacteroides salanitronis
Bacteroides salanitronis DSM 18170
DNA section
IS Length : 982 bp

Ends


IR Length : 22/24

IRL : TAGGTATAGGCGTTTAAGCCGCACCAATTGAGATAGAATCGCTACCTTTG
IRR : TAGGCATAGGCGTTTAAGTCGCACTACGCAATTTATTGGTTTGCAGTCTA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTTGAAATATATTTATTTAATACGT8
CATTGGTAAATAGCTTTATTTCCGTATC8
ATAAAGCATAAAATCTTTTTTATCTTTC8

DNA sequence

TAGGTATAGGCGTTTAAGCCGCACCAATTGAGATAGAATCGCTACCTTTGTAGCATGGGAACCAGAAATCAATTCAAAGGCGTGAACTCAATTAAATTCT
ACCAGCGTTTTGTGTCAGATGACGAATGTTACAAGTATCTGGCGGATATTAAATGGGAGAATGGCTACATTTGTAAAAGATGTGGTCACACCCACTACTG
TAAAGGGACAAAACCATATTCGAGACGTTGCACCAAGTGCAAGCATGATGAGAGTCCGACAGCAGGCACAATGTTTGACAAATTGAAATTTCCTTTGCTT
ATCGCGTTCCATATAGCATTCAAAATCAGCACTAAAAAGAAAGGGATGTCTTCTTTGGAATTGTCGGAAGAGTACGAATTACGGCAGAAGACTTGTTGGG
AATTCAAGCGAAAGATACAGTATGCAATGAAAAGCTCATGCAAGTATCCGCTTAATGGTCAAGTCCATGTCGATGAATTCTATATTGGCGGAGAGGAAGA
ACAGAAACGTGGTCGTTCCAAAGGGAAAAAGCGCCTAGTTCAAGTCGCACTTGAGATATTGCCCGGCAAGGGCGTCGGCAGAGCGTATGCGCGAGCCATA
GAAAATGCCTCGGCAGAATCCCTGAAACCATTGTTCATCGATCACATATCCAAAGAGGCTGAAATCGTCACTGACGAGTGGAACGGCTATTTGCCAATAA
AATCCGACTATCCAAAGCTAACACAAAGGAAATCCGAAGATGGATCGTCATTTCCCGATATACATATACACATTATGAATATCAAGGGATGGTTGAGGGG
AATACATCATCACTGTTCAAAAGCGCAGCTCCAAGGCTATCTTGACGAGTATCATTTTCGATACAATAGACGCAATAACATGGACACAATATTCGATGTG
CTTATCAGACGGATGGCTAATTCAGAACCTTTTAGACTGCAAACCAATAAATTGCGTAGTGCGACTTAAACGCCTATGCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
915 bp304 aa55969+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGTRNQFKGVNSIKFYQRFVSDDECYKYLADIKWENGYICKRCGHTHYCKGTKPYSRRCTKCKHDESPTAGTMFDKLKFPLLIAFHIAFKISTKKKGMSS
LELSEEYELRQKTCWEFKRKIQYAMKSSCKYPLNGQVHVDEFYIGGEEEQKRGRSKGKKRLVQVALEILPGKGVGRAYARAIENASAESLKPLFIDHISK
EAEIVTDEWNGYLPIKSDYPKLTQRKSEDGSSFPDIHIHIMNIKGWLRGIHHHCSKAQLQGYLDEYHFRYNRRNNMDTIFDVLIRRMANSEPFRLQTNKL
RSAT

 

Blast result :
Comments
ISBasa1 is 83% aa similar to ISPrsp1.
References
1] ISfinder annotation (2016)
2] Gronow,S., Held,B., Lucas,S., Lapidus,A., Del Rio,T.G., Nolan,M., Tice,H., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brambilla,E.M., Rohde,M., Goker,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Eisen,J.A. (2011) Stand Genomic Sci 4 (2), 191-199