ISBasa1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002530 | ND | Bacteroides salanitronis | Bacteroides salanitronis DSM 18170 |
DNA section
IS Length : 982 bp
Ends
IR Length : 22/24
IRL : TAGGTATAGGCGTTTAAGCCGCACCAATTGAGATAGAATCGCTACCTTTG
IRR : TAGGCATAGGCGTTTAAGTCGCACTACGCAATTTATTGGTTTGCAGTCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTTGAAA | TATATTTA | TTTAATACGT | 8 |
CATTGGTAAA | TAGCTTTA | TTTCCGTATC | 8 |
ATAAAGCATA | AAATCTTT | TTTATCTTTC | 8 |
DNA sequence
TAGGTATAGGCGTTTAAGCCGCACCAATTGAGATAGAATCGCTACCTTTGTAGCATGGGAACCAGAAATCAATTCAAAGGCGTGAACTCAATTAAATTCT
ACCAGCGTTTTGTGTCAGATGACGAATGTTACAAGTATCTGGCGGATATTAAATGGGAGAATGGCTACATTTGTAAAAGATGTGGTCACACCCACTACTG
TAAAGGGACAAAACCATATTCGAGACGTTGCACCAAGTGCAAGCATGATGAGAGTCCGACAGCAGGCACAATGTTTGACAAATTGAAATTTCCTTTGCTT
ATCGCGTTCCATATAGCATTCAAAATCAGCACTAAAAAGAAAGGGATGTCTTCTTTGGAATTGTCGGAAGAGTACGAATTACGGCAGAAGACTTGTTGGG
AATTCAAGCGAAAGATACAGTATGCAATGAAAAGCTCATGCAAGTATCCGCTTAATGGTCAAGTCCATGTCGATGAATTCTATATTGGCGGAGAGGAAGA
ACAGAAACGTGGTCGTTCCAAAGGGAAAAAGCGCCTAGTTCAAGTCGCACTTGAGATATTGCCCGGCAAGGGCGTCGGCAGAGCGTATGCGCGAGCCATA
GAAAATGCCTCGGCAGAATCCCTGAAACCATTGTTCATCGATCACATATCCAAAGAGGCTGAAATCGTCACTGACGAGTGGAACGGCTATTTGCCAATAA
AATCCGACTATCCAAAGCTAACACAAAGGAAATCCGAAGATGGATCGTCATTTCCCGATATACATATACACATTATGAATATCAAGGGATGGTTGAGGGG
AATACATCATCACTGTTCAAAAGCGCAGCTCCAAGGCTATCTTGACGAGTATCATTTTCGATACAATAGACGCAATAACATGGACACAATATTCGATGTG
CTTATCAGACGGATGGCTAATTCAGAACCTTTTAGACTGCAAACCAATAAATTGCGTAGTGCGACTTAAACGCCTATGCCTA
ACCAGCGTTTTGTGTCAGATGACGAATGTTACAAGTATCTGGCGGATATTAAATGGGAGAATGGCTACATTTGTAAAAGATGTGGTCACACCCACTACTG
TAAAGGGACAAAACCATATTCGAGACGTTGCACCAAGTGCAAGCATGATGAGAGTCCGACAGCAGGCACAATGTTTGACAAATTGAAATTTCCTTTGCTT
ATCGCGTTCCATATAGCATTCAAAATCAGCACTAAAAAGAAAGGGATGTCTTCTTTGGAATTGTCGGAAGAGTACGAATTACGGCAGAAGACTTGTTGGG
AATTCAAGCGAAAGATACAGTATGCAATGAAAAGCTCATGCAAGTATCCGCTTAATGGTCAAGTCCATGTCGATGAATTCTATATTGGCGGAGAGGAAGA
ACAGAAACGTGGTCGTTCCAAAGGGAAAAAGCGCCTAGTTCAAGTCGCACTTGAGATATTGCCCGGCAAGGGCGTCGGCAGAGCGTATGCGCGAGCCATA
GAAAATGCCTCGGCAGAATCCCTGAAACCATTGTTCATCGATCACATATCCAAAGAGGCTGAAATCGTCACTGACGAGTGGAACGGCTATTTGCCAATAA
AATCCGACTATCCAAAGCTAACACAAAGGAAATCCGAAGATGGATCGTCATTTCCCGATATACATATACACATTATGAATATCAAGGGATGGTTGAGGGG
AATACATCATCACTGTTCAAAAGCGCAGCTCCAAGGCTATCTTGACGAGTATCATTTTCGATACAATAGACGCAATAACATGGACACAATATTCGATGTG
CTTATCAGACGGATGGCTAATTCAGAACCTTTTAGACTGCAAACCAATAAATTGCGTAGTGCGACTTAAACGCCTATGCCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
915 bp | 304 aa | 55 | 969 | + | No |
Chemistry : DDE
ORF sequence :
MGTRNQFKGVNSIKFYQRFVSDDECYKYLADIKWENGYICKRCGHTHYCKGTKPYSRRCTKCKHDESPTAGTMFDKLKFPLLIAFHIAFKISTKKKGMSS
LELSEEYELRQKTCWEFKRKIQYAMKSSCKYPLNGQVHVDEFYIGGEEEQKRGRSKGKKRLVQVALEILPGKGVGRAYARAIENASAESLKPLFIDHISK
EAEIVTDEWNGYLPIKSDYPKLTQRKSEDGSSFPDIHIHIMNIKGWLRGIHHHCSKAQLQGYLDEYHFRYNRRNNMDTIFDVLIRRMANSEPFRLQTNKL
RSAT
LELSEEYELRQKTCWEFKRKIQYAMKSSCKYPLNGQVHVDEFYIGGEEEQKRGRSKGKKRLVQVALEILPGKGVGRAYARAIENASAESLKPLFIDHISK
EAEIVTDEWNGYLPIKSDYPKLTQRKSEDGSSFPDIHIHIMNIKGWLRGIHHHCSKAQLQGYLDEYHFRYNRRNNMDTIFDVLIRRMANSEPFRLQTNKL
RSAT
Blast result :
Comments
ISBasa1 is 83% aa similar to ISPrsp1.
References
1] ISfinder annotation (2016)
2] Gronow,S., Held,B., Lucas,S., Lapidus,A., Del Rio,T.G., Nolan,M., Tice,H., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brambilla,E.M., Rohde,M., Goker,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Eisen,J.A. (2011) Stand Genomic Sci 4 (2), 191-199
2] Gronow,S., Held,B., Lucas,S., Lapidus,A., Del Rio,T.G., Nolan,M., Tice,H., Deshpande,S., Cheng,J.F., Pitluck,S., Liolios,K., Pagani,I., Ivanova,N., Mavromatis,K., Pati,A., Tapia,R., Han,C., Goodwin,L., Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brambilla,E.M., Rohde,M., Goker,M., Detter,J.C., Woyke,T., Bristow,J., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Eisen,J.A. (2011) Stand Genomic Sci 4 (2), 191-199