ISPa64
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JIEU01000003 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa BWH056 |
DNA section
IS Length : 2540 bp
Ends
IR Length : 20/26
IRL : tgttgatttccatccagaagtgacccactaagcccggcgatttccatcca
IRR : tgttgagttccatgcaatcctgacccggcatttccatccaatattgaccc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCCATTATTC | aatctggaG | AAATTCCATGA | 9 |
DNA sequence
TGTTGATTTCCATCCAGAAGTGACCCACTAAGCCCGGCGATTTCCATCCAAATCTGACCCACGTAAGAACCCTAACCTGCTGTTTTTAGCGGCAGGAGCA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATCCGGGAGATAGCCCGACGCACGGGCCTGTCTCG
CAATACCATCCGCAAGTACCTTCGCGAGGGCGAGGCGGCGCCCAGCTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGACGCGTATGCCGAGAAGCTCGGC
GCCTGGCTCAAGAGCGAGGCATCGAGGTCACGCAAGCAGCGGCGCACCCTCAAGCAGATGCATGCCGACCTGGTCGCGCTCGGCTACCAGGGCTCCTACA
ACCGCGTGGCGGCCTTCGCCCGAGCGTGGCACGCACATCGCCACGAGGTCGAGCAGACCACCGGCCGAGGCACCTTCGTGCCGCTGGCCTTCGGTCCAGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCGGTCATCGGCGGGGAGCGCACCAAGCTCCAGGTCGCCCACTTCAAGCTCAGCCACAGCCGGGCC
TTCCTGGTTCGGGCGTATCCGCTGCAGACCCACGAGATGCTGTTCGACGCGCACAACCGCGCCTTCGAGGTGTTGGGCGGCGTGCCGCGACGAGGCATCT
ACGACAACATGAAGACGGCCGTGGATCGGGTGCGCCGAGGCAAGGAGCGCGACGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCTTCGGGCTGGGAGAAGGGTCAGGTGGAGAAGAACGTGCGCGATGCGCGTCACCGGCTGTGGCAGCCCGTCCCGGCGTTCACG
ACGTTGCCGCTGCTCAACGACTGGCTCGAGCACCGCTGCAAGGCGCTGTGGAGCGAAATCGCCCACGGCAAGCTGCCCGGCACCCTGGCCGACGTGTGGG
CCCAGGAGCGGCCGCTGCTGATGCCAATGCCTCGTCCCTTCGACGGCTTCGTCGAGCACACCAAGCGCGTCTCGCCTACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTGCCCGCGTCCTATGCGAACCGCCCGGTGAGCCTGCGGGTCTACGCAGACCGCCTGGTCGTGGCGGCCGAGGGGCAGCTCCTGTGC
GAGCACACGCGGATCATCGACCGCCGTCACGACACGGCCGGCCAGACCGTCTACGACTGGCGTCACTACTTGGCGGTGCTGCAACGCAAGCCCGGGGCGC
TCAGGAACGGCGCGCCCTTCAGTGAACTGCCGCAGGGCTTCCGACGGTTGCAGACCGTCCTGCTCCAGCAGCCCGGCGGGGACCGGGAGATGGTAGAGAT
CCTCGCGCTCGTCTTGCATCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGGCCCTGGAAGCTGGGGTGGCGAGCAAGACGCATGTGCTCAACGTC
CTGCACCGCCTGCTCGATGGCAAGCCAGTAGCGCCTGCGCCTGTGACGGCACCTCAGGCGCTGCGACTGGCGAACGAGCCCCAGGCCAACGTGTTGCGCT
ATGACTCCCTCAGAGGACGCGTGACTGCAGTCGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTCATCATGC
TGCGTGAACTCAAGATGCACGGCATGGCGCACGCCGTGGCCGAACTCGCCGAGCAGGGCTCGCCGGCCTTCGAGGCTGCACAGCCGATGCTCTCGCAGTT
GCTCAAGGCCGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCCTACCAGTTGAAGCTGGCACGCTTCCCGGCCTACCGCGACCTCACAGGCTTCGACTTC
CAGCACAGCGAGGTCAATGAAGCCTTGGTGCGGCAGTTGCATCGATGCGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGCCCGGGCACGG
GCAAGACCCACATCGCCACGGCGCTGGGTGTGCAGGCCATCGAGCATCACCACCGGCGTGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCCCTAGA
GCAGGAGAAGGCCAGCGGCAACCCGGGGCACATCGCGCATCGGCTGATGTATGCGGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGGGCGCTGTTGTTCCATCTGCTCTCGAAGCTCTACGAGCGCACGAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTGT
TCGGCGATGCGAAGATGACGACGGCGCTGCTGGACCGGCTCACGCATCATTGCCACATCCTGGAGACCGGCAACGACAGCTTCCGGTTCAAGCACAGCTC
GGCTCAACCCGTTCAGGCAGACCAACCCAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCGCCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATCCGGGAGATAGCCCGACGCACGGGCCTGTCTCG
CAATACCATCCGCAAGTACCTTCGCGAGGGCGAGGCGGCGCCCAGCTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGACGCGTATGCCGAGAAGCTCGGC
GCCTGGCTCAAGAGCGAGGCATCGAGGTCACGCAAGCAGCGGCGCACCCTCAAGCAGATGCATGCCGACCTGGTCGCGCTCGGCTACCAGGGCTCCTACA
ACCGCGTGGCGGCCTTCGCCCGAGCGTGGCACGCACATCGCCACGAGGTCGAGCAGACCACCGGCCGAGGCACCTTCGTGCCGCTGGCCTTCGGTCCAGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCGGTCATCGGCGGGGAGCGCACCAAGCTCCAGGTCGCCCACTTCAAGCTCAGCCACAGCCGGGCC
TTCCTGGTTCGGGCGTATCCGCTGCAGACCCACGAGATGCTGTTCGACGCGCACAACCGCGCCTTCGAGGTGTTGGGCGGCGTGCCGCGACGAGGCATCT
ACGACAACATGAAGACGGCCGTGGATCGGGTGCGCCGAGGCAAGGAGCGCGACGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCTTCGGGCTGGGAGAAGGGTCAGGTGGAGAAGAACGTGCGCGATGCGCGTCACCGGCTGTGGCAGCCCGTCCCGGCGTTCACG
ACGTTGCCGCTGCTCAACGACTGGCTCGAGCACCGCTGCAAGGCGCTGTGGAGCGAAATCGCCCACGGCAAGCTGCCCGGCACCCTGGCCGACGTGTGGG
CCCAGGAGCGGCCGCTGCTGATGCCAATGCCTCGTCCCTTCGACGGCTTCGTCGAGCACACCAAGCGCGTCTCGCCTACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTGCCCGCGTCCTATGCGAACCGCCCGGTGAGCCTGCGGGTCTACGCAGACCGCCTGGTCGTGGCGGCCGAGGGGCAGCTCCTGTGC
GAGCACACGCGGATCATCGACCGCCGTCACGACACGGCCGGCCAGACCGTCTACGACTGGCGTCACTACTTGGCGGTGCTGCAACGCAAGCCCGGGGCGC
TCAGGAACGGCGCGCCCTTCAGTGAACTGCCGCAGGGCTTCCGACGGTTGCAGACCGTCCTGCTCCAGCAGCCCGGCGGGGACCGGGAGATGGTAGAGAT
CCTCGCGCTCGTCTTGCATCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGGCCCTGGAAGCTGGGGTGGCGAGCAAGACGCATGTGCTCAACGTC
CTGCACCGCCTGCTCGATGGCAAGCCAGTAGCGCCTGCGCCTGTGACGGCACCTCAGGCGCTGCGACTGGCGAACGAGCCCCAGGCCAACGTGTTGCGCT
ATGACTCCCTCAGAGGACGCGTGACTGCAGTCGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTCATCATGC
TGCGTGAACTCAAGATGCACGGCATGGCGCACGCCGTGGCCGAACTCGCCGAGCAGGGCTCGCCGGCCTTCGAGGCTGCACAGCCGATGCTCTCGCAGTT
GCTCAAGGCCGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCCTACCAGTTGAAGCTGGCACGCTTCCCGGCCTACCGCGACCTCACAGGCTTCGACTTC
CAGCACAGCGAGGTCAATGAAGCCTTGGTGCGGCAGTTGCATCGATGCGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGCCCGGGCACGG
GCAAGACCCACATCGCCACGGCGCTGGGTGTGCAGGCCATCGAGCATCACCACCGGCGTGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCCCTAGA
GCAGGAGAAGGCCAGCGGCAACCCGGGGCACATCGCGCATCGGCTGATGTATGCGGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGGGCGCTGTTGTTCCATCTGCTCTCGAAGCTCTACGAGCGCACGAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTGT
TCGGCGATGCGAAGATGACGACGGCGCTGCTGGACCGGCTCACGCATCATTGCCACATCCTGGAGACCGGCAACGACAGCTTCCGGTTCAAGCACAGCTC
GGCTCAACCCGTTCAGGCAGACCAACCCAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCGCCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1566 bp | 518 aa | 106 | 1671 | + | No |
Chemistry : DDE
ORF sequence :
MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLREGEAAPSYAKRVSPSKLDAYAEKLGAWLKSEASRSRKQRRTLKQMHADLVALGYQGSYNR
VAAFARAWHAHRHEVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFTTLPLLNDWLEHRCKALWSEIAHGKLPGTLADVWAQ
ERPLLMPMPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQTVLLQQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANVLRYD
SLRGRVTAVDPIIIQEVRHAP
VAAFARAWHAHRHEVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFTTLPLLNDWLEHRCKALWSEIAHGKLPGTLADVWAQ
ERPLLMPMPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQTVLLQQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANVLRYD
SLRGRVTAVDPIIIQEVRHAP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
837 bp | 268 aa | 1661 | 2497 | + | No |
AG : IS21 helper
ORF sequence :
MRHDPASAAIVIMLRELKMHGMAHAVAELAEQGSPAFEAAQPMLSQLLKAETAEREVRSVAYQLKLARFPAYRDLTGFDFQHSEVNEALVRQLHRCEFME
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQPRKKEKTKNLSTP
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQPRKKEKTKNLSTP
Blast result :
Comments
ISPa64 is 90% (transposase and 92% (IS21 helper) aa similar to IS1600.
References