ISPpn1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP015372 | ND | Pandoraea pnomenusa | Pandoraea pnomenusa MCB032 plasmid 1 |
DNA section
IS Length : 2540 bp
Ends
IR Length : 19/26
IRL : TGTTGATTTCCATCTAGAAGTGACCCACTAAGCCCGGTGATTTCCATCTA
IRR : TGTTGAGTTCCATGCAATCCTGACCCGGCATTTCCATCCAATATTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGACAAGAGC | GTCATCGT | CTTCAACAGC | 8 |
DNA sequence
TGTTGATTTCCATCTAGAAGTGACCCACTAAGCCCGGTGATTTCCATCTAAATCTGACCCACGTAAGAACCCTAACCTGCTGCTTTTAGCGGCAGGAGCA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATCCGGGAGATAGCCCGACGCACGGGCCTGTCTCG
CAACACCATCCGCAAGTACCTTCGCGAGGGTGAGGCGGCGCCCAGCTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGATGCGTATGCAGAGAAGCTTGGC
GCCTGGCTCAAGAGCGAGGCATCGAGATCGCGCAAGCAGCGGCGCACCCTCAAACAGATGCATGCAGACTTGGCCGCGCTCGGCTACCAGGGCTCCTACA
ACCGCGTGGCCGCCTTCGCGCGGGCATGGCACGCGCATCGCCACGAGGTGGAGCAGACCACCGGTCGAGGCACATTCGTGCCGCTGGCCTTCGGCCCGGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGGCGGGGAGCGCACCAAGCTGCAGGTCGCGCACTTCAAGCTCAGCCACAGCCGGGCC
TTCCTGGTGCGGGCATACCCACTGCAGACCCACGAGATGCTGTTCGACGCGCACAACCGCGCCTTCGAAGTGTTGGGCGGCGTGCCGCGACGAGGCATCT
ACGACAACATGAAGACGGCCGTGGATCGCGTGCGCCGCGGCAAGGAGCGCGACGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCTTCGGGCTGGGAGAAGGGTCAGGTGGAGAAGAATGTGCGCGATGCGCGTCACCGGCTGTGGCAGCCCGTCCCGGCGTTCGCG
ACGCTGCCGATGCTCAACGACTGGCTCGAGCAACGCTGCAAGGCGCTGTGGGGCGAGATCACTCACGGCAAGCTGCCCGGCACTCTGGCCGACGTGTGGG
CCCAGGAGCGGCCGCTGCTGATGCCCGTGCCTCGTCCCTTCGACGGCTTCGTCGAGCACACCAAGCGCGTCTCACCCACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTGCCCGCGTCCTATGCGAACCGCCCGGTGAGCCTGCGGGTCTACGCAGACCGCCTGGTCGTGGCGGCCGAGGGGCAGCTCCTGTGC
GAGCACACGCGGATCATCGACCGTCGCCACGATACGGCCGGCCAGACCGTCTACGACTGGCGTCACTACCTGGCGGTGCTGCAACGCAAGCCGGGGGCGT
TGAGGAACGGCGCGCCCTTCAGTGAGCTGCCGCAGGGCTTCAGACGGTTGCAGACCGTCCTGCTCAAGCAGCCCGGTGGCGACCGGGAGATGGTGGAGAT
CCTCGCGCTCGTCTTGCACCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGTCACTGGAAGCGGGCGTCGCGAGCAAGACGCATGTGCTGAACGTC
CTGCATCGGCTGCTCGACGGCAAGCCGGTGGCGCCAGCGCCGGTGACGGCGCCTCAGGCGTTGCGCCTTGCAAACGAACCCCAGGCCAATGTGCTGCGCT
ATGACTCCCTCAGAGGACGCGTGACTGCAGCCGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTCATCATGC
TGCGTGAACTCAAGATGCACGGCATGGCGCACGCCGTGGCCGAACTCGCCGAGCAGGGCTCGCCGGCGTTCGAGGCCGCGCAGCCGATGCTCTCGCAGTT
GCTCAAGGCCGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCCTACCAGTTGAAGCTGGCACGCTTCCCGGCCTACCGCGACCTCACAGGCTTCGACTTC
CAGCACAGCGAGGTCAATGAAGCCTTGGTGCGGCAGTTGCATCGATGCGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGCCCGGGCACGG
GCAAGACCCACATCGCCACGGCGCTGGGTGTGCAGGCCATCGAGCATCACCACCGGCGTGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCGCTCGA
GCAGGAGAAGGCCAGCGGCAACCCGGGCCACATCGCGCATCGGCTGATGTACGCGGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGGGCGTTGTTGTTCCATCTGCTCTCGAAGCTCTACGAGCGCACGAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTGT
TCGGCGATGCGAAGATGACGACGGCGCTGCTGGACCGGCTCACGCATCACTGCCATATCCTGGAGACCGGCAACGACAGCTTCCGCTTCAAGCACAGCTC
GGCTCAACCCGTTCAGGCAGACCAACCCAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCACCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCATTGCGTGAGCAACTGTCCATCCGGGAGATAGCCCGACGCACGGGCCTGTCTCG
CAACACCATCCGCAAGTACCTTCGCGAGGGTGAGGCGGCGCCCAGCTACGCGAAGCGGGTCAGCCCGAGCAAGCTCGATGCGTATGCAGAGAAGCTTGGC
GCCTGGCTCAAGAGCGAGGCATCGAGATCGCGCAAGCAGCGGCGCACCCTCAAACAGATGCATGCAGACTTGGCCGCGCTCGGCTACCAGGGCTCCTACA
ACCGCGTGGCCGCCTTCGCGCGGGCATGGCACGCGCATCGCCACGAGGTGGAGCAGACCACCGGTCGAGGCACATTCGTGCCGCTGGCCTTCGGCCCGGG
CGAGGCGTTCCAGTTCGACTGGAGCGAGGACTGGGCCGTCATCGGCGGGGAGCGCACCAAGCTGCAGGTCGCGCACTTCAAGCTCAGCCACAGCCGGGCC
TTCCTGGTGCGGGCATACCCACTGCAGACCCACGAGATGCTGTTCGACGCGCACAACCGCGCCTTCGAAGTGTTGGGCGGCGTGCCGCGACGAGGCATCT
ACGACAACATGAAGACGGCCGTGGATCGCGTGCGCCGCGGCAAGGAGCGCGACGTCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGCAACCCGGCTTCGGGCTGGGAGAAGGGTCAGGTGGAGAAGAATGTGCGCGATGCGCGTCACCGGCTGTGGCAGCCCGTCCCGGCGTTCGCG
ACGCTGCCGATGCTCAACGACTGGCTCGAGCAACGCTGCAAGGCGCTGTGGGGCGAGATCACTCACGGCAAGCTGCCCGGCACTCTGGCCGACGTGTGGG
CCCAGGAGCGGCCGCTGCTGATGCCCGTGCCTCGTCCCTTCGACGGCTTCGTCGAGCACACCAAGCGCGTCTCACCCACCTGCCTGGTGCACTTCGAGCG
CAACCGCTACAGCGTGCCCGCGTCCTATGCGAACCGCCCGGTGAGCCTGCGGGTCTACGCAGACCGCCTGGTCGTGGCGGCCGAGGGGCAGCTCCTGTGC
GAGCACACGCGGATCATCGACCGTCGCCACGATACGGCCGGCCAGACCGTCTACGACTGGCGTCACTACCTGGCGGTGCTGCAACGCAAGCCGGGGGCGT
TGAGGAACGGCGCGCCCTTCAGTGAGCTGCCGCAGGGCTTCAGACGGTTGCAGACCGTCCTGCTCAAGCAGCCCGGTGGCGACCGGGAGATGGTGGAGAT
CCTCGCGCTCGTCTTGCACCACGACGAGCAGGCCGTGCTGACCGCGGTCGAGCTGTCACTGGAAGCGGGCGTCGCGAGCAAGACGCATGTGCTGAACGTC
CTGCATCGGCTGCTCGACGGCAAGCCGGTGGCGCCAGCGCCGGTGACGGCGCCTCAGGCGTTGCGCCTTGCAAACGAACCCCAGGCCAATGTGCTGCGCT
ATGACTCCCTCAGAGGACGCGTGACTGCAGCCGATCCGATCATCATCCAGGAGGTGCGCCATGCGCCATGACCCCGCCAGTGCAGCCATCGTCATCATGC
TGCGTGAACTCAAGATGCACGGCATGGCGCACGCCGTGGCCGAACTCGCCGAGCAGGGCTCGCCGGCGTTCGAGGCCGCGCAGCCGATGCTCTCGCAGTT
GCTCAAGGCCGAGACGGCCGAACGCGAGGTGCGCTCGGTGGCCTACCAGTTGAAGCTGGCACGCTTCCCGGCCTACCGCGACCTCACAGGCTTCGACTTC
CAGCACAGCGAGGTCAATGAAGCCTTGGTGCGGCAGTTGCATCGATGCGAGTTCATGGAGGACGCCCAGAACGTGGTGCTCGTCGGTGGCCCGGGCACGG
GCAAGACCCACATCGCCACGGCGCTGGGTGTGCAGGCCATCGAGCATCACCACCGGCGTGTGAGGTTCTTCTCCACGGTCGAACTGGTCAACGCGCTCGA
GCAGGAGAAGGCCAGCGGCAACCCGGGCCACATCGCGCATCGGCTGATGTACGCGGACATGGTGATCCTCGACGAGCTCGGCTACCTGCCGTTCAGCGCC
TCGGGCGGGGCGTTGTTGTTCCATCTGCTCTCGAAGCTCTACGAGCGCACGAGCGTGGTGATCACGACGAACCTGAGCTTCAGCGAGTGGGCCAGCGTGT
TCGGCGATGCGAAGATGACGACGGCGCTGCTGGACCGGCTCACGCATCACTGCCATATCCTGGAGACCGGCAACGACAGCTTCCGCTTCAAGCACAGCTC
GGCTCAACCCGTTCAGGCAGACCAACCCAGAAAGAAGGAGAAGACCAAGAACTTATCCACACCGTGAGCCACCAGGCTCGCAAAGAGGGTGGGTCAATAT
TGGATGGAAATGCCGGGTCAGGATTGCATGGAACTCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1566 bp | 521 aa | 106 | 1671 | + | No |
Chemistry : DDE
ORF sequence :
MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLREGEAAPSYAKRVSPSKLDAYAEKLGAWLKSEASRSRKQRRTLKQMHADLAALGYQGSYNR
VAAFARAWHAHRHEVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLPMLNDWLEQRCKALWGEITHGKLPGTLADVWAQ
ERPLLMPVPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQTVLLKQPGGDREMVEILALVLHHDEQAVLTAVELSLEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANVLRYD
SLRGRVTAADPIIIQEVRHAP
VAAFARAWHAHRHEVEQTTGRGTFVPLAFGPGEAFQFDWSEDWAVIGGERTKLQVAHFKLSHSRAFLVRAYPLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDRVRRGKERDVNARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLPMLNDWLEQRCKALWGEITHGKLPGTLADVWAQ
ERPLLMPVPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYADRLVVAAEGQLLCEHTRIIDRRHDTAGQTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGFRRLQTVLLKQPGGDREMVEILALVLHHDEQAVLTAVELSLEAGVASKTHVLNVLHRLLDGKPVAPAPVTAPQALRLANEPQANVLRYD
SLRGRVTAADPIIIQEVRHAP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
807 bp | 268 aa | 1661 | 2467 | + | No |
AG : IS21 helper
ORF sequence :
MRHDPASAAIVIMLRELKMHGMAHAVAELAEQGSPAFEAAQPMLSQLLKAETAEREVRSVAYQLKLARFPAYRDLTGFDFQHSEVNEALVRQLHRCEFME
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQPRKKEKTKNLSTP
DAQNVVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVILDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQADQPRKKEKTKNLSTP
Blast result :
Comments
ISPpn1 is 90% (transposase) and 92% (IS21 helper) aa similar to IS1600.
References
1] ISfinder annotation (2016)
2] Chao,H.-J. and Zhou,N.-Y. (2016) Direct GenBank submission.
2] Chao,H.-J. and Zhou,N.-Y. (2016) Direct GenBank submission.