ISVapa3

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LKTW01000168 ND Variovorax paradoxus
Variovorax paradoxus H112
Variovorax paradoxus H108
Variovorax paradoxus H090
DNA section
IS Length : 2561 bp

Ends


IR Length : 20/28

IRL : tgttgatttccatccagaagtgacccactcggcccggtgatttccatcta
IRR : tgttgagttccatggaatcctgacccgcgatttccatcgaatattgaccc

Insertion site


Left flankDirect repeatRight flankDR Length
GGGCCCGAAGCTATACCCAT0

DNA sequence

TGTTGATTTCCATCCAGAAGTGACCCACTCGGCCCGGTGATTTCCATCTAAATCTGACCCACGTGATAACCCTAACCTGCTGCTTTTAGCAGCAGGAGCA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCACTGCGAGAGCAACTGTCCATCCGAGAGATAGCCCGGCGCACTGGCTTGTCTCG
CAACACCATCCGCAAGTACCTTCGCGAGGGCGAGGCGGCGCCCAGTTACGCGAAGCGCATCAGCCCGAGCAAGCTCGACGCGTTCGCCGAGAAGCTCGGC
GGCTGGCTCAAGAGCGAGGCGTCCAAGTCACGCAAGCAGCGGCGCACGCTGACGCAGATGCACGCCGACCTGGTGGCGCTGGGCTATCAGGGCTCCTATA
ACCGCGTGGCGGCCTTTGCACGAGCGTGGCATGCGCATCGCCACGAGGTCCAGCAGACCACCGGGCGAGGCACATTCGTGCCCCTGGCCTTTGGCCCCGG
CGAGGCATTCCAGTTCGATTGGAGCGAGGACTGGGCCCTCATCGCTGGCGAGCGTACCAAGCTGCAGGTGGCGCACTTCAAGCTCAGCCACAGCCGCGCG
TTCATCGTGCGCGCCTACCTGCTGCAGACCCACGAGATGCTGTTCGATGCGCACAACCGAGCCTTCGAGGTGCTCGGGGGCGTGCCTCGGCGCGGCATCT
ACGACAACATGAAGACCGCCGTGGACAAGGTACGCCGCGGCAAGGAGCGCGACATCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGTAACCCGGCCTCCGGCTGGGAGAAGGGCCAGGTCGAGAAGAACGTGCGTGATGCGCGCCATCGGTTGTGGCAACCCGTGCCGGCGTTCGCC
ACGCTGGCGCTGCTCAACGACTGGCTGGAGGACCGCTGCAAGGCGCTGTGGAGCGAGATCGTCCACGGCAAGCTGCCAGGGACCGTGGCCGATGTCTGGG
CGCAGGAGCGGCCGCTACTGATGCAGATCCCCAGACCCTTCGATGGTTTCGTGGAACACACCAAGCGCGTCTCGCCCACCTGCCTGGTGCACTTCGAGCG
CAACCGTTACAGCGTTCCGGCCTCCTACGCGAACCGGCCAGTGAGCCTGCGCGTGTACGCCGAACGTCTTGTTGTGGCGGCCGAGGGCCAGATCGTGTGC
GAGCACACGCGCATCATTGACCGTCGCCACGACACCGCAGGCCGGACTGTCTACGACTGGAGGCACTACCTGGCGGTGCTGCAACGCAAGCCAGGAGCAC
TCAGGAACGGAGCGCCCTTCAGCGAGCTGCCCCAGGGCTTGCGGCGGCTGCAGGCCGCGTTGCTGAAGCAGCCAGGTGGCGACCGCGAGATGGTGGAGAT
CCTGGCGCTGGTGCTGCATCACGACGAGCAGGCAGTGCTGACCGCGGTCGAACTGGCGCTGGAAGCCGGCGTAGCCAGCAAGACCCATGTGCTAAATGTG
TTGCACCGACTGCTCGATGCCAAGCCCGTTGCGCCAGCGCCTGTCACGGCACCGCAGGCGCTGCGCCTGGTGAACGAGCCGAAGGCCGATGTGCTGCGCT
ACGACACGCTCAGGGGGCGTGCCAGCGCTGCTGGCGGCTTGTGCGGGCCGCTGATCTCCAAGTCGAGCAGCCAGGAGGTGCGCCATGCGACATGACCCTG
CCAGCGGCGCCCTCGTGATCATGCTGCGCGAACTCAAGATGCACGGCATGGCCCAGGCCGTCGCGGAGCTGGCCGAACAGGGATCGCCGGCCTTCGAGGC
GGCCCAACCGATGCTCTCGCAGTTGCTCAAGGCAGAGACGGCCGAGCGGGAGGTACGCTCGGTGGCCTACCAGTTGAAGCTCGCTCGCTTCCCAGCCTAC
CGTGACCTCGCCGGCTTCGACTTCGCCAACAGCGAGGTCAACGAGGCCCTGGTGCGTCAGCTACACCGATGCGAGTTCATGGACGATGCGCAGAACCTGG
TACTTGTCGGCGGGCCGGGCACGGGTAAGACTCATATCGCCACAGCCCTGGGCGTGCAGGCCATCGAGCACCATCACCGCCGGGTGCGCTTCTTCTCGAC
GGTAGAACTGGTCAACGCACTCGAACAAGAGAAGGCCAGTGGCAATCCCGGCCACATCGCGCACCGACTGATGTACGCGGACATGGTGGTGCTCGATGAA
CTGGGCTACCTGCCGTTCAGCGCATCAGGTGGCGCGCTGTTGTTCCATCTGCTGTCCAAACTCTACGAACGCACGAGCGTGGTGATCACAACCAACTTGA
GCTTCAGCGAGTGGGCCAGCGTCTTCGGCGACGCGAAGATGACGACGGCGTTGCTGGACCGGCTCACGCATCACTGCCATATTCTGGAGACTGGAAACGA
CAGCTTCCGCTTCAAGCACAGCTCGGCTCAACCCGTTCAAGCAGTCCAACCTAAAAAGGAGAAAGCCAAGAACTTATCCACACCGTGAGCCGGCTGGCTC
GCAAAGAGGGTGGGTCAATATTCGATGGAAATCGCGGGTCAGGATTCCATGGAACTCAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1590 bp529 aa1061695+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLREGEAAPSYAKRISPSKLDAFAEKLGGWLKSEASKSRKQRRTLTQMHADLVALGYQGSYNR
VAAFARAWHAHRHEVQQTTGRGTFVPLAFGPGEAFQFDWSEDWALIAGERTKLQVAHFKLSHSRAFIVRAYLLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDKVRRGKERDINARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLALLNDWLEDRCKALWSEIVHGKLPGTVADVWAQ
ERPLLMQIPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYAERLVVAAEGQIVCEHTRIIDRRHDTAGRTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGLRRLQAALLKQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDAKPVAPAPVTAPQALRLVNEPKADVLRYD
TLRGRASAAGGLCGPLISKSSSQEVRHAT

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
804 bp267 aa16852488+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRHDPASGALVIMLRELKMHGMAQAVAELAEQGSPAFEAAQPMLSQLLKAETAEREVRSVAYQLKLARFPAYRDLAGFDFANSEVNEALVRQLHRCEFMD
DAQNLVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVVLDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQAVQPKKEKAKNLSTP

 

Blast result :
Comments
ISVapa3 is 89% (transposase) and 94% (IS21 helper) aa similar to IS1600.
References