ISVapa3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LKTW01000168 | ND | Variovorax paradoxus | Variovorax paradoxus H112 Variovorax paradoxus H108 Variovorax paradoxus H090 |
DNA section
IS Length : 2561 bp
Ends
IR Length : 20/28
IRL : tgttgatttccatccagaagtgacccactcggcccggtgatttccatcta
IRR : tgttgagttccatggaatcctgacccgcgatttccatcgaatattgaccc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGCCCGAAG | CTATACCCAT | 0 |
DNA sequence
TGTTGATTTCCATCCAGAAGTGACCCACTCGGCCCGGTGATTTCCATCTAAATCTGACCCACGTGATAACCCTAACCTGCTGCTTTTAGCAGCAGGAGCA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCACTGCGAGAGCAACTGTCCATCCGAGAGATAGCCCGGCGCACTGGCTTGTCTCG
CAACACCATCCGCAAGTACCTTCGCGAGGGCGAGGCGGCGCCCAGTTACGCGAAGCGCATCAGCCCGAGCAAGCTCGACGCGTTCGCCGAGAAGCTCGGC
GGCTGGCTCAAGAGCGAGGCGTCCAAGTCACGCAAGCAGCGGCGCACGCTGACGCAGATGCACGCCGACCTGGTGGCGCTGGGCTATCAGGGCTCCTATA
ACCGCGTGGCGGCCTTTGCACGAGCGTGGCATGCGCATCGCCACGAGGTCCAGCAGACCACCGGGCGAGGCACATTCGTGCCCCTGGCCTTTGGCCCCGG
CGAGGCATTCCAGTTCGATTGGAGCGAGGACTGGGCCCTCATCGCTGGCGAGCGTACCAAGCTGCAGGTGGCGCACTTCAAGCTCAGCCACAGCCGCGCG
TTCATCGTGCGCGCCTACCTGCTGCAGACCCACGAGATGCTGTTCGATGCGCACAACCGAGCCTTCGAGGTGCTCGGGGGCGTGCCTCGGCGCGGCATCT
ACGACAACATGAAGACCGCCGTGGACAAGGTACGCCGCGGCAAGGAGCGCGACATCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGTAACCCGGCCTCCGGCTGGGAGAAGGGCCAGGTCGAGAAGAACGTGCGTGATGCGCGCCATCGGTTGTGGCAACCCGTGCCGGCGTTCGCC
ACGCTGGCGCTGCTCAACGACTGGCTGGAGGACCGCTGCAAGGCGCTGTGGAGCGAGATCGTCCACGGCAAGCTGCCAGGGACCGTGGCCGATGTCTGGG
CGCAGGAGCGGCCGCTACTGATGCAGATCCCCAGACCCTTCGATGGTTTCGTGGAACACACCAAGCGCGTCTCGCCCACCTGCCTGGTGCACTTCGAGCG
CAACCGTTACAGCGTTCCGGCCTCCTACGCGAACCGGCCAGTGAGCCTGCGCGTGTACGCCGAACGTCTTGTTGTGGCGGCCGAGGGCCAGATCGTGTGC
GAGCACACGCGCATCATTGACCGTCGCCACGACACCGCAGGCCGGACTGTCTACGACTGGAGGCACTACCTGGCGGTGCTGCAACGCAAGCCAGGAGCAC
TCAGGAACGGAGCGCCCTTCAGCGAGCTGCCCCAGGGCTTGCGGCGGCTGCAGGCCGCGTTGCTGAAGCAGCCAGGTGGCGACCGCGAGATGGTGGAGAT
CCTGGCGCTGGTGCTGCATCACGACGAGCAGGCAGTGCTGACCGCGGTCGAACTGGCGCTGGAAGCCGGCGTAGCCAGCAAGACCCATGTGCTAAATGTG
TTGCACCGACTGCTCGATGCCAAGCCCGTTGCGCCAGCGCCTGTCACGGCACCGCAGGCGCTGCGCCTGGTGAACGAGCCGAAGGCCGATGTGCTGCGCT
ACGACACGCTCAGGGGGCGTGCCAGCGCTGCTGGCGGCTTGTGCGGGCCGCTGATCTCCAAGTCGAGCAGCCAGGAGGTGCGCCATGCGACATGACCCTG
CCAGCGGCGCCCTCGTGATCATGCTGCGCGAACTCAAGATGCACGGCATGGCCCAGGCCGTCGCGGAGCTGGCCGAACAGGGATCGCCGGCCTTCGAGGC
GGCCCAACCGATGCTCTCGCAGTTGCTCAAGGCAGAGACGGCCGAGCGGGAGGTACGCTCGGTGGCCTACCAGTTGAAGCTCGCTCGCTTCCCAGCCTAC
CGTGACCTCGCCGGCTTCGACTTCGCCAACAGCGAGGTCAACGAGGCCCTGGTGCGTCAGCTACACCGATGCGAGTTCATGGACGATGCGCAGAACCTGG
TACTTGTCGGCGGGCCGGGCACGGGTAAGACTCATATCGCCACAGCCCTGGGCGTGCAGGCCATCGAGCACCATCACCGCCGGGTGCGCTTCTTCTCGAC
GGTAGAACTGGTCAACGCACTCGAACAAGAGAAGGCCAGTGGCAATCCCGGCCACATCGCGCACCGACTGATGTACGCGGACATGGTGGTGCTCGATGAA
CTGGGCTACCTGCCGTTCAGCGCATCAGGTGGCGCGCTGTTGTTCCATCTGCTGTCCAAACTCTACGAACGCACGAGCGTGGTGATCACAACCAACTTGA
GCTTCAGCGAGTGGGCCAGCGTCTTCGGCGACGCGAAGATGACGACGGCGTTGCTGGACCGGCTCACGCATCACTGCCATATTCTGGAGACTGGAAACGA
CAGCTTCCGCTTCAAGCACAGCTCGGCTCAACCCGTTCAAGCAGTCCAACCTAAAAAGGAGAAAGCCAAGAACTTATCCACACCGTGAGCCGGCTGGCTC
GCAAAGAGGGTGGGTCAATATTCGATGGAAATCGCGGGTCAGGATTCCATGGAACTCAACA
CAGGAGTGATTGACGTGGCGACACTGAGTGTCATCAGACGTTGGGCACTGCGAGAGCAACTGTCCATCCGAGAGATAGCCCGGCGCACTGGCTTGTCTCG
CAACACCATCCGCAAGTACCTTCGCGAGGGCGAGGCGGCGCCCAGTTACGCGAAGCGCATCAGCCCGAGCAAGCTCGACGCGTTCGCCGAGAAGCTCGGC
GGCTGGCTCAAGAGCGAGGCGTCCAAGTCACGCAAGCAGCGGCGCACGCTGACGCAGATGCACGCCGACCTGGTGGCGCTGGGCTATCAGGGCTCCTATA
ACCGCGTGGCGGCCTTTGCACGAGCGTGGCATGCGCATCGCCACGAGGTCCAGCAGACCACCGGGCGAGGCACATTCGTGCCCCTGGCCTTTGGCCCCGG
CGAGGCATTCCAGTTCGATTGGAGCGAGGACTGGGCCCTCATCGCTGGCGAGCGTACCAAGCTGCAGGTGGCGCACTTCAAGCTCAGCCACAGCCGCGCG
TTCATCGTGCGCGCCTACCTGCTGCAGACCCACGAGATGCTGTTCGATGCGCACAACCGAGCCTTCGAGGTGCTCGGGGGCGTGCCTCGGCGCGGCATCT
ACGACAACATGAAGACCGCCGTGGACAAGGTACGCCGCGGCAAGGAGCGCGACATCAACGCGCGCTTCAGCGCCATGGTCAGCCACTACCTGTTCGAGGC
CGAGTTCTGTAACCCGGCCTCCGGCTGGGAGAAGGGCCAGGTCGAGAAGAACGTGCGTGATGCGCGCCATCGGTTGTGGCAACCCGTGCCGGCGTTCGCC
ACGCTGGCGCTGCTCAACGACTGGCTGGAGGACCGCTGCAAGGCGCTGTGGAGCGAGATCGTCCACGGCAAGCTGCCAGGGACCGTGGCCGATGTCTGGG
CGCAGGAGCGGCCGCTACTGATGCAGATCCCCAGACCCTTCGATGGTTTCGTGGAACACACCAAGCGCGTCTCGCCCACCTGCCTGGTGCACTTCGAGCG
CAACCGTTACAGCGTTCCGGCCTCCTACGCGAACCGGCCAGTGAGCCTGCGCGTGTACGCCGAACGTCTTGTTGTGGCGGCCGAGGGCCAGATCGTGTGC
GAGCACACGCGCATCATTGACCGTCGCCACGACACCGCAGGCCGGACTGTCTACGACTGGAGGCACTACCTGGCGGTGCTGCAACGCAAGCCAGGAGCAC
TCAGGAACGGAGCGCCCTTCAGCGAGCTGCCCCAGGGCTTGCGGCGGCTGCAGGCCGCGTTGCTGAAGCAGCCAGGTGGCGACCGCGAGATGGTGGAGAT
CCTGGCGCTGGTGCTGCATCACGACGAGCAGGCAGTGCTGACCGCGGTCGAACTGGCGCTGGAAGCCGGCGTAGCCAGCAAGACCCATGTGCTAAATGTG
TTGCACCGACTGCTCGATGCCAAGCCCGTTGCGCCAGCGCCTGTCACGGCACCGCAGGCGCTGCGCCTGGTGAACGAGCCGAAGGCCGATGTGCTGCGCT
ACGACACGCTCAGGGGGCGTGCCAGCGCTGCTGGCGGCTTGTGCGGGCCGCTGATCTCCAAGTCGAGCAGCCAGGAGGTGCGCCATGCGACATGACCCTG
CCAGCGGCGCCCTCGTGATCATGCTGCGCGAACTCAAGATGCACGGCATGGCCCAGGCCGTCGCGGAGCTGGCCGAACAGGGATCGCCGGCCTTCGAGGC
GGCCCAACCGATGCTCTCGCAGTTGCTCAAGGCAGAGACGGCCGAGCGGGAGGTACGCTCGGTGGCCTACCAGTTGAAGCTCGCTCGCTTCCCAGCCTAC
CGTGACCTCGCCGGCTTCGACTTCGCCAACAGCGAGGTCAACGAGGCCCTGGTGCGTCAGCTACACCGATGCGAGTTCATGGACGATGCGCAGAACCTGG
TACTTGTCGGCGGGCCGGGCACGGGTAAGACTCATATCGCCACAGCCCTGGGCGTGCAGGCCATCGAGCACCATCACCGCCGGGTGCGCTTCTTCTCGAC
GGTAGAACTGGTCAACGCACTCGAACAAGAGAAGGCCAGTGGCAATCCCGGCCACATCGCGCACCGACTGATGTACGCGGACATGGTGGTGCTCGATGAA
CTGGGCTACCTGCCGTTCAGCGCATCAGGTGGCGCGCTGTTGTTCCATCTGCTGTCCAAACTCTACGAACGCACGAGCGTGGTGATCACAACCAACTTGA
GCTTCAGCGAGTGGGCCAGCGTCTTCGGCGACGCGAAGATGACGACGGCGTTGCTGGACCGGCTCACGCATCACTGCCATATTCTGGAGACTGGAAACGA
CAGCTTCCGCTTCAAGCACAGCTCGGCTCAACCCGTTCAAGCAGTCCAACCTAAAAAGGAGAAAGCCAAGAACTTATCCACACCGTGAGCCGGCTGGCTC
GCAAAGAGGGTGGGTCAATATTCGATGGAAATCGCGGGTCAGGATTCCATGGAACTCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1590 bp | 529 aa | 106 | 1695 | + | No |
Chemistry : DDE
ORF sequence :
MIDVATLSVIRRWALREQLSIREIARRTGLSRNTIRKYLREGEAAPSYAKRISPSKLDAFAEKLGGWLKSEASKSRKQRRTLTQMHADLVALGYQGSYNR
VAAFARAWHAHRHEVQQTTGRGTFVPLAFGPGEAFQFDWSEDWALIAGERTKLQVAHFKLSHSRAFIVRAYLLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDKVRRGKERDINARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLALLNDWLEDRCKALWSEIVHGKLPGTVADVWAQ
ERPLLMQIPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYAERLVVAAEGQIVCEHTRIIDRRHDTAGRTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGLRRLQAALLKQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDAKPVAPAPVTAPQALRLVNEPKADVLRYD
TLRGRASAAGGLCGPLISKSSSQEVRHAT
VAAFARAWHAHRHEVQQTTGRGTFVPLAFGPGEAFQFDWSEDWALIAGERTKLQVAHFKLSHSRAFIVRAYLLQTHEMLFDAHNRAFEVLGGVPRRGIYD
NMKTAVDKVRRGKERDINARFSAMVSHYLFEAEFCNPASGWEKGQVEKNVRDARHRLWQPVPAFATLALLNDWLEDRCKALWSEIVHGKLPGTVADVWAQ
ERPLLMQIPRPFDGFVEHTKRVSPTCLVHFERNRYSVPASYANRPVSLRVYAERLVVAAEGQIVCEHTRIIDRRHDTAGRTVYDWRHYLAVLQRKPGALR
NGAPFSELPQGLRRLQAALLKQPGGDREMVEILALVLHHDEQAVLTAVELALEAGVASKTHVLNVLHRLLDAKPVAPAPVTAPQALRLVNEPKADVLRYD
TLRGRASAAGGLCGPLISKSSSQEVRHAT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
804 bp | 267 aa | 1685 | 2488 | + | No |
AG : IS21 helper
ORF sequence :
MRHDPASGALVIMLRELKMHGMAQAVAELAEQGSPAFEAAQPMLSQLLKAETAEREVRSVAYQLKLARFPAYRDLAGFDFANSEVNEALVRQLHRCEFMD
DAQNLVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVVLDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQAVQPKKEKAKNLSTP
DAQNLVLVGGPGTGKTHIATALGVQAIEHHHRRVRFFSTVELVNALEQEKASGNPGHIAHRLMYADMVVLDELGYLPFSASGGALLFHLLSKLYERTSVV
ITTNLSFSEWASVFGDAKMTTALLDRLTHHCHILETGNDSFRFKHSSAQPVQAVQPKKEKAKNLSTP
Blast result :
Comments
ISVapa3 is 89% (transposase) and 94% (IS21 helper) aa similar to IS1600.
References