ISPa63
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LJNU01000008 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa ATCC 33348 |
DNA section
IS Length : 2654 bp
Ends
IR Length : 20/26
IRL : TGTTGGCgccgaccgaaatttgagccccttttgaagggtctgccgaccca
IRR : TGTCGGCgccgatgcaaaagtgagccaccgggccgaccgaatactgagcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
aaggagcgtt | gcgggacgtg | 0 |
DNA sequence
TGTTGGCGCCGACCGAAATTTGAGCCCCTTTTGAAGGGTCTGCCGACCCAAAACTGAGCCAGGTGAACAACCTACTCTGCTGCTTTTTTGTGCAGCAGAG
GAAGAGGAGTGATCACCATGGACATGATTGGCAGAATCCGGCGGCTGCACAGCCGGGGCAACAAGTCGGAGCGCGAGATCGCGCGCATCACGGGGCTGTC
GCGCAACACGGTCTCCAAGTGGCTGCACGGGCAGGTCGACGGTCCGCCGAAATACCAGCGCGGCGAGCAACCGACCAAGCTCACGGCGTTCCACGAGGCG
TTGCGCCAGGCCTTGACGGCCGATGCCCGGCGACCGAGGCAGCAGCGGCGCACCGCCCGCGCCCTGTACACCGAGATCAAGGCCGCCGGCTACGAAGGCG
GCTACAGCCGCGTGACCGACTTCATCCGCGCATGGCGCCAGGGCGAAGGCCAAGGCGCTGCGACCAACGCCTTCATCCCGCTGACCTTCGCGCTCGGCGA
GGCCTACCAGTTCGACTGGAGCGAAGAGGGCCTGGTGGTGGGCGGCATCTACTACCGCGTGCAGGTTGCGCACATGAAGCTGTGCGCCTCTCGGGCGTTC
TGGCTGGTGGCCTACCCCAGCCAGGGCCACGAGATGCTGTTCGACGCCCACACGCGTTCGTTCGCCGCGCTCGGCGGCGTGGCCCGGCGCGGCATCTACG
ACAACATGAAGACGGCAGTGGACAAGGTCCGCAAGGGCAAGGGCCGTGTCGTCAACGAGCGCTTCGCCACCATGTGCGCGCACTACCTGGTCGATCCGGA
CTTCTGCAACGTGGCCTCGGGCTGGGAGAAGGGCGTGGTGGAGAAGAACGTGCAGGACAGCCGCCGGCGCATCTGGATCGAGGCGGCCAAGCGCAAGTTC
TCCAGCTTCGCCGAGCTGAACGCCTGGCTCGCCGAGCGCTGCCGAGCCCTGTGGGCCGAAGTGCGCCACCCCGAGCACGCGCAGTTCAGCGTGGCCGAGA
TGCTGGAGCATGAACGTGCGCACCTGATGCCCATGCCGGCACCGTTCGACGGCTACGTGGAGAAGCCCGCTCGCGTGTCCAGCACCTGCCTGGTATCGGT
GGCGCGCAACCGGTACTCGATGCCGTGCGAACTGCACGGGCAGATGGTCAGCACGCGGCTGTACCCCGCCAGCGTGGTCATCGTGTCGGGCGACAGCATC
GTCGCGCGCCACGACCGGCTGAGCAACGCCGGAGAGACCCGCTACGACTGGCAGCACTACATCCCGCTGCTGCAGCGCAAGCCTGGCGCGTTGCGCAACG
GCGCGCCGTTCGCCGACATGCCCGAGCCGCTGCAGCGCCTGCGCCGCGGGCTGCTGCGCAACCCCGGCGGCGACCGCGTGATGGCGCAGGTGCTGGCCAT
CGTGCCGGCGGCCGGGTTGGATGCGGTGCTGGTCGCGGTGGAGCTGGCGCTGGACACCGGGCCACCGGGCAAGGTCAGCGTGGAGCACGTGGTCAACGTA
CTGGGCCGGCTGAACGCGGCACCGACCCCACCGACCGCGTCCACGCACCTGAAGGCCATCACCGCGCCGCTGGCCGACACCGCGCGCTATGACCGCCTGC
GTGCGGGCACCGAGGCCGCTGCCGAGGAGTCCAGCCATGAAGCCTGACGTGCTGATCGAACTGAAGGCGCTGCGTCTGCACGGCATGGCCGGCGCATGGG
CCGATCTGGTCGAGCAAGGTGGCGGTGCGGGCGCAGGCGCCGGCATCGAGTCCTCGCGCTGGCTCATCGAACACCTGCTGCAGGCCGAGGCCACGGACCG
TGCGATGCGCTCGGTCAGCCACCAGATGCACGCGGCCCGCTTCCCGGTGCACCGCGACCTGGCAGGCTTCGACTTCGAGGTCTCGCCGGTGGACCGCGCG
CTCGTGACCACGCTTGCCACGACTGCCTTCACGGACAACGCGCACAACGTCGTGCTGGTCGGTGGGCCAGGCACCGGCAAGACCCATCTGGCCACCGCCA
TCGGCGTGTCTGGCATCACCCGGCACGGCAAGCGGGTGCGGTTCTATTCCACGGTCGACCTGGTCAACGCGCTGGAGCAGGAGAAAGCGCAGGGCAAGGC
CGGACGCATCGCCGCGAGTCTCTTGCGCATGGACCTGGTGATCCTCGATGAGCTGGGCTACCTGCCGTTCAGCCAGGCCGGCGGGGCACTGCTGTTCCAC
CTGCTCAGCAAGCTGTACGAGCACACCAGCGTGGCGATCACGACCAACCTGGACTTCGCCGAATGGTCCAGCGTGTTCGGCGACGCCAAGATGACCACGG
CGCTGCTGGACCGGCTCACGCACCACTGCCACATCGTGGAGACCGGCAACGAGTCCATCCGCTTCAGCCGCAGCACGGCGGACGCCAAAAAGCGCATCAA
GGCCCGTGAGCAGGCCCGCAAGGGCGCCAAGGCCGACGCCGGGATCGAACCGTTCTGAGCCAGCGCCGTGCGTGGCAAGCCGCTACGGGCTACGCCCTGC
GCGGCTTGCCACGCACGATCAACACGGCATCGAGGAGGTCCACGAAACAGGCTGACAACTACACTTATCCACAGCCGACCATCTCAACGTCGGCTTCCAC
CCCTGGCTCAGTATTCGGTCGGCCCGGTGGCTCACTTTTGCATCGGCGCCGACA
GAAGAGGAGTGATCACCATGGACATGATTGGCAGAATCCGGCGGCTGCACAGCCGGGGCAACAAGTCGGAGCGCGAGATCGCGCGCATCACGGGGCTGTC
GCGCAACACGGTCTCCAAGTGGCTGCACGGGCAGGTCGACGGTCCGCCGAAATACCAGCGCGGCGAGCAACCGACCAAGCTCACGGCGTTCCACGAGGCG
TTGCGCCAGGCCTTGACGGCCGATGCCCGGCGACCGAGGCAGCAGCGGCGCACCGCCCGCGCCCTGTACACCGAGATCAAGGCCGCCGGCTACGAAGGCG
GCTACAGCCGCGTGACCGACTTCATCCGCGCATGGCGCCAGGGCGAAGGCCAAGGCGCTGCGACCAACGCCTTCATCCCGCTGACCTTCGCGCTCGGCGA
GGCCTACCAGTTCGACTGGAGCGAAGAGGGCCTGGTGGTGGGCGGCATCTACTACCGCGTGCAGGTTGCGCACATGAAGCTGTGCGCCTCTCGGGCGTTC
TGGCTGGTGGCCTACCCCAGCCAGGGCCACGAGATGCTGTTCGACGCCCACACGCGTTCGTTCGCCGCGCTCGGCGGCGTGGCCCGGCGCGGCATCTACG
ACAACATGAAGACGGCAGTGGACAAGGTCCGCAAGGGCAAGGGCCGTGTCGTCAACGAGCGCTTCGCCACCATGTGCGCGCACTACCTGGTCGATCCGGA
CTTCTGCAACGTGGCCTCGGGCTGGGAGAAGGGCGTGGTGGAGAAGAACGTGCAGGACAGCCGCCGGCGCATCTGGATCGAGGCGGCCAAGCGCAAGTTC
TCCAGCTTCGCCGAGCTGAACGCCTGGCTCGCCGAGCGCTGCCGAGCCCTGTGGGCCGAAGTGCGCCACCCCGAGCACGCGCAGTTCAGCGTGGCCGAGA
TGCTGGAGCATGAACGTGCGCACCTGATGCCCATGCCGGCACCGTTCGACGGCTACGTGGAGAAGCCCGCTCGCGTGTCCAGCACCTGCCTGGTATCGGT
GGCGCGCAACCGGTACTCGATGCCGTGCGAACTGCACGGGCAGATGGTCAGCACGCGGCTGTACCCCGCCAGCGTGGTCATCGTGTCGGGCGACAGCATC
GTCGCGCGCCACGACCGGCTGAGCAACGCCGGAGAGACCCGCTACGACTGGCAGCACTACATCCCGCTGCTGCAGCGCAAGCCTGGCGCGTTGCGCAACG
GCGCGCCGTTCGCCGACATGCCCGAGCCGCTGCAGCGCCTGCGCCGCGGGCTGCTGCGCAACCCCGGCGGCGACCGCGTGATGGCGCAGGTGCTGGCCAT
CGTGCCGGCGGCCGGGTTGGATGCGGTGCTGGTCGCGGTGGAGCTGGCGCTGGACACCGGGCCACCGGGCAAGGTCAGCGTGGAGCACGTGGTCAACGTA
CTGGGCCGGCTGAACGCGGCACCGACCCCACCGACCGCGTCCACGCACCTGAAGGCCATCACCGCGCCGCTGGCCGACACCGCGCGCTATGACCGCCTGC
GTGCGGGCACCGAGGCCGCTGCCGAGGAGTCCAGCCATGAAGCCTGACGTGCTGATCGAACTGAAGGCGCTGCGTCTGCACGGCATGGCCGGCGCATGGG
CCGATCTGGTCGAGCAAGGTGGCGGTGCGGGCGCAGGCGCCGGCATCGAGTCCTCGCGCTGGCTCATCGAACACCTGCTGCAGGCCGAGGCCACGGACCG
TGCGATGCGCTCGGTCAGCCACCAGATGCACGCGGCCCGCTTCCCGGTGCACCGCGACCTGGCAGGCTTCGACTTCGAGGTCTCGCCGGTGGACCGCGCG
CTCGTGACCACGCTTGCCACGACTGCCTTCACGGACAACGCGCACAACGTCGTGCTGGTCGGTGGGCCAGGCACCGGCAAGACCCATCTGGCCACCGCCA
TCGGCGTGTCTGGCATCACCCGGCACGGCAAGCGGGTGCGGTTCTATTCCACGGTCGACCTGGTCAACGCGCTGGAGCAGGAGAAAGCGCAGGGCAAGGC
CGGACGCATCGCCGCGAGTCTCTTGCGCATGGACCTGGTGATCCTCGATGAGCTGGGCTACCTGCCGTTCAGCCAGGCCGGCGGGGCACTGCTGTTCCAC
CTGCTCAGCAAGCTGTACGAGCACACCAGCGTGGCGATCACGACCAACCTGGACTTCGCCGAATGGTCCAGCGTGTTCGGCGACGCCAAGATGACCACGG
CGCTGCTGGACCGGCTCACGCACCACTGCCACATCGTGGAGACCGGCAACGAGTCCATCCGCTTCAGCCGCAGCACGGCGGACGCCAAAAAGCGCATCAA
GGCCCGTGAGCAGGCCCGCAAGGGCGCCAAGGCCGACGCCGGGATCGAACCGTTCTGAGCCAGCGCCGTGCGTGGCAAGCCGCTACGGGCTACGCCCTGC
GCGGCTTGCCACGCACGATCAACACGGCATCGAGGAGGTCCACGAAACAGGCTGACAACTACACTTATCCACAGCCGACCATCTCAACGTCGGCTTCCAC
CCCTGGCTCAGTATTCGGTCGGCCCGGTGGCTCACTTTTGCATCGGCGCCGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1530 bp | 509 aa | 118 | 1647 | + | No |
Chemistry : DDE
ORF sequence :
MDMIGRIRRLHSRGNKSEREIARITGLSRNTVSKWLHGQVDGPPKYQRGEQPTKLTAFHEALRQALTADARRPRQQRRTARALYTEIKAAGYEGGYSRVT
DFIRAWRQGEGQGAATNAFIPLTFALGEAYQFDWSEEGLVVGGIYYRVQVAHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDKVRKGKGRVVNERFATMCAHYLVDPDFCNVASGWEKGVVEKNVQDSRRRIWIEAAKRKFSSFAELNAWLAERCRALWAEVRHPEHAQFSVAEMLEHER
AHLMPMPAPFDGYVEKPARVSSTCLVSVARNRYSMPCELHGQMVSTRLYPASVVIVSGDSIVARHDRLSNAGETRYDWQHYIPLLQRKPGALRNGAPFAD
MPEPLQRLRRGLLRNPGGDRVMAQVLAIVPAAGLDAVLVAVELALDTGPPGKVSVEHVVNVLGRLNAAPTPPTASTHLKAITAPLADTARYDRLRAGTEA
AAEESSHEA
DFIRAWRQGEGQGAATNAFIPLTFALGEAYQFDWSEEGLVVGGIYYRVQVAHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDKVRKGKGRVVNERFATMCAHYLVDPDFCNVASGWEKGVVEKNVQDSRRRIWIEAAKRKFSSFAELNAWLAERCRALWAEVRHPEHAQFSVAEMLEHER
AHLMPMPAPFDGYVEKPARVSSTCLVSVARNRYSMPCELHGQMVSTRLYPASVVIVSGDSIVARHDRLSNAGETRYDWQHYIPLLQRKPGALRNGAPFAD
MPEPLQRLRRGLLRNPGGDRVMAQVLAIVPAAGLDAVLVAVELALDTGPPGKVSVEHVVNVLGRLNAAPTPPTASTHLKAITAPLADTARYDRLRAGTEA
AAEESSHEA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 257 aa | 1637 | 2458 | + | No |
AG : IS21 helper
ORF sequence :
MKPDVLIELKALRLHGMAGAWADLVEQGGGAGAGAGIESSRWLIEHLLQAEATDRAMRSVSHQMHAARFPVHRDLAGFDFEVSPVDRALVTTLATTAFTD
NAHNVVLVGGPGTGKTHLATAIGVSGITRHGKRVRFYSTVDLVNALEQEKAQGKAGRIAASLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVA
ITTNLDFAEWSSVFGDAKMTTALLDRLTHHCHIVETGNESIRFSRSTADAKKRIKAREQARKGAKADAGIEPF
NAHNVVLVGGPGTGKTHLATAIGVSGITRHGKRVRFYSTVDLVNALEQEKAQGKAGRIAASLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVA
ITTNLDFAEWSSVFGDAKMTTALLDRLTHHCHIVETGNESIRFSRSTADAKKRIKAREQARKGAKADAGIEPF
Blast result :
Comments
ISPa63 is 93% (transposase) and 95% (IS21 helper) aa similar to ISAisp6.
References