ISPa63

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LJNU01000008 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa ATCC 33348
DNA section
IS Length : 2654 bp

Ends


IR Length : 20/26

IRL : TGTTGGCgccgaccgaaatttgagccccttttgaagggtctgccgaccca
IRR : TGTCGGCgccgatgcaaaagtgagccaccgggccgaccgaatactgagcc

Insertion site


Left flankDirect repeatRight flankDR Length
aaggagcgttgcgggacgtg0

DNA sequence

TGTTGGCGCCGACCGAAATTTGAGCCCCTTTTGAAGGGTCTGCCGACCCAAAACTGAGCCAGGTGAACAACCTACTCTGCTGCTTTTTTGTGCAGCAGAG
GAAGAGGAGTGATCACCATGGACATGATTGGCAGAATCCGGCGGCTGCACAGCCGGGGCAACAAGTCGGAGCGCGAGATCGCGCGCATCACGGGGCTGTC
GCGCAACACGGTCTCCAAGTGGCTGCACGGGCAGGTCGACGGTCCGCCGAAATACCAGCGCGGCGAGCAACCGACCAAGCTCACGGCGTTCCACGAGGCG
TTGCGCCAGGCCTTGACGGCCGATGCCCGGCGACCGAGGCAGCAGCGGCGCACCGCCCGCGCCCTGTACACCGAGATCAAGGCCGCCGGCTACGAAGGCG
GCTACAGCCGCGTGACCGACTTCATCCGCGCATGGCGCCAGGGCGAAGGCCAAGGCGCTGCGACCAACGCCTTCATCCCGCTGACCTTCGCGCTCGGCGA
GGCCTACCAGTTCGACTGGAGCGAAGAGGGCCTGGTGGTGGGCGGCATCTACTACCGCGTGCAGGTTGCGCACATGAAGCTGTGCGCCTCTCGGGCGTTC
TGGCTGGTGGCCTACCCCAGCCAGGGCCACGAGATGCTGTTCGACGCCCACACGCGTTCGTTCGCCGCGCTCGGCGGCGTGGCCCGGCGCGGCATCTACG
ACAACATGAAGACGGCAGTGGACAAGGTCCGCAAGGGCAAGGGCCGTGTCGTCAACGAGCGCTTCGCCACCATGTGCGCGCACTACCTGGTCGATCCGGA
CTTCTGCAACGTGGCCTCGGGCTGGGAGAAGGGCGTGGTGGAGAAGAACGTGCAGGACAGCCGCCGGCGCATCTGGATCGAGGCGGCCAAGCGCAAGTTC
TCCAGCTTCGCCGAGCTGAACGCCTGGCTCGCCGAGCGCTGCCGAGCCCTGTGGGCCGAAGTGCGCCACCCCGAGCACGCGCAGTTCAGCGTGGCCGAGA
TGCTGGAGCATGAACGTGCGCACCTGATGCCCATGCCGGCACCGTTCGACGGCTACGTGGAGAAGCCCGCTCGCGTGTCCAGCACCTGCCTGGTATCGGT
GGCGCGCAACCGGTACTCGATGCCGTGCGAACTGCACGGGCAGATGGTCAGCACGCGGCTGTACCCCGCCAGCGTGGTCATCGTGTCGGGCGACAGCATC
GTCGCGCGCCACGACCGGCTGAGCAACGCCGGAGAGACCCGCTACGACTGGCAGCACTACATCCCGCTGCTGCAGCGCAAGCCTGGCGCGTTGCGCAACG
GCGCGCCGTTCGCCGACATGCCCGAGCCGCTGCAGCGCCTGCGCCGCGGGCTGCTGCGCAACCCCGGCGGCGACCGCGTGATGGCGCAGGTGCTGGCCAT
CGTGCCGGCGGCCGGGTTGGATGCGGTGCTGGTCGCGGTGGAGCTGGCGCTGGACACCGGGCCACCGGGCAAGGTCAGCGTGGAGCACGTGGTCAACGTA
CTGGGCCGGCTGAACGCGGCACCGACCCCACCGACCGCGTCCACGCACCTGAAGGCCATCACCGCGCCGCTGGCCGACACCGCGCGCTATGACCGCCTGC
GTGCGGGCACCGAGGCCGCTGCCGAGGAGTCCAGCCATGAAGCCTGACGTGCTGATCGAACTGAAGGCGCTGCGTCTGCACGGCATGGCCGGCGCATGGG
CCGATCTGGTCGAGCAAGGTGGCGGTGCGGGCGCAGGCGCCGGCATCGAGTCCTCGCGCTGGCTCATCGAACACCTGCTGCAGGCCGAGGCCACGGACCG
TGCGATGCGCTCGGTCAGCCACCAGATGCACGCGGCCCGCTTCCCGGTGCACCGCGACCTGGCAGGCTTCGACTTCGAGGTCTCGCCGGTGGACCGCGCG
CTCGTGACCACGCTTGCCACGACTGCCTTCACGGACAACGCGCACAACGTCGTGCTGGTCGGTGGGCCAGGCACCGGCAAGACCCATCTGGCCACCGCCA
TCGGCGTGTCTGGCATCACCCGGCACGGCAAGCGGGTGCGGTTCTATTCCACGGTCGACCTGGTCAACGCGCTGGAGCAGGAGAAAGCGCAGGGCAAGGC
CGGACGCATCGCCGCGAGTCTCTTGCGCATGGACCTGGTGATCCTCGATGAGCTGGGCTACCTGCCGTTCAGCCAGGCCGGCGGGGCACTGCTGTTCCAC
CTGCTCAGCAAGCTGTACGAGCACACCAGCGTGGCGATCACGACCAACCTGGACTTCGCCGAATGGTCCAGCGTGTTCGGCGACGCCAAGATGACCACGG
CGCTGCTGGACCGGCTCACGCACCACTGCCACATCGTGGAGACCGGCAACGAGTCCATCCGCTTCAGCCGCAGCACGGCGGACGCCAAAAAGCGCATCAA
GGCCCGTGAGCAGGCCCGCAAGGGCGCCAAGGCCGACGCCGGGATCGAACCGTTCTGAGCCAGCGCCGTGCGTGGCAAGCCGCTACGGGCTACGCCCTGC
GCGGCTTGCCACGCACGATCAACACGGCATCGAGGAGGTCCACGAAACAGGCTGACAACTACACTTATCCACAGCCGACCATCTCAACGTCGGCTTCCAC
CCCTGGCTCAGTATTCGGTCGGCCCGGTGGCTCACTTTTGCATCGGCGCCGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1530 bp509 aa1181647+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDMIGRIRRLHSRGNKSEREIARITGLSRNTVSKWLHGQVDGPPKYQRGEQPTKLTAFHEALRQALTADARRPRQQRRTARALYTEIKAAGYEGGYSRVT
DFIRAWRQGEGQGAATNAFIPLTFALGEAYQFDWSEEGLVVGGIYYRVQVAHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDKVRKGKGRVVNERFATMCAHYLVDPDFCNVASGWEKGVVEKNVQDSRRRIWIEAAKRKFSSFAELNAWLAERCRALWAEVRHPEHAQFSVAEMLEHER
AHLMPMPAPFDGYVEKPARVSSTCLVSVARNRYSMPCELHGQMVSTRLYPASVVIVSGDSIVARHDRLSNAGETRYDWQHYIPLLQRKPGALRNGAPFAD
MPEPLQRLRRGLLRNPGGDRVMAQVLAIVPAAGLDAVLVAVELALDTGPPGKVSVEHVVNVLGRLNAAPTPPTASTHLKAITAPLADTARYDRLRAGTEA
AAEESSHEA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
822 bp257 aa16372458+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MKPDVLIELKALRLHGMAGAWADLVEQGGGAGAGAGIESSRWLIEHLLQAEATDRAMRSVSHQMHAARFPVHRDLAGFDFEVSPVDRALVTTLATTAFTD
NAHNVVLVGGPGTGKTHLATAIGVSGITRHGKRVRFYSTVDLVNALEQEKAQGKAGRIAASLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVA
ITTNLDFAEWSSVFGDAKMTTALLDRLTHHCHIVETGNESIRFSRSTADAKKRIKAREQARKGAKADAGIEPF

 

Blast result :
Comments
ISPa63 is 93% (transposase) and 95% (IS21 helper) aa similar to ISAisp6.
References